BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.160
(878 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX659729.1|CX659729 PO01013C10 Poplar SC cDNA library Po... 44 0.009
gb|CX659745.1|CX659745 PO01013E07 Poplar SC cDNA library Po... 44 0.009
gb|AJ776026.1|AJ776026 AJ776026 Populus euphratica root 3-6... 40 0.14
>gb|CX659729.1|CX659729 PO01013C10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01013C10 5', mRNA sequence
Length = 665
Score = 44.1 bits (22), Expect = 0.009
Identities = 79/98 (80%)
Strand = Plus / Minus
Query: 581 tcacatagtatcggaacatgtgtaatcacatcaataggagaaatatttccagcgatcaca 640
|||||||| || |||||||| ||||| ||||| || || ||||| |||||||| || |
Sbjct: 294 tcacataggatgggaacatgagtaatgacatcgattggtgaaatgtttccagctattatg 235
Query: 641 cacaatcctttgttcccgcggcgaatgctcttgactac 678
|| |||||||| | || || ||||||||||| |||||
Sbjct: 234 cataatcctttatggccacgacgaatgctcttcactac 197
>gb|CX659745.1|CX659745 PO01013E07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01013E07 5', mRNA sequence
Length = 372
Score = 44.1 bits (22), Expect = 0.009
Identities = 79/98 (80%)
Strand = Plus / Minus
Query: 581 tcacatagtatcggaacatgtgtaatcacatcaataggagaaatatttccagcgatcaca 640
|||||||| || |||||||| ||||| ||||| || || ||||| |||||||| || |
Sbjct: 294 tcacataggatgggaacatgagtaatgacatcgattggtgaaatgtttccagctattatg 235
Query: 641 cacaatcctttgttcccgcggcgaatgctcttgactac 678
|| |||||||| | || || ||||||||||| |||||
Sbjct: 234 cataatcctttatggccacgacgaatgctcttcactac 197
>gb|AJ776026.1|AJ776026 AJ776026 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400008C09F1, mRNA sequence
Length = 500
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 825 ccatcgccgccgccgccttc 844
||||||||||||||||||||
Sbjct: 113 ccatcgccgccgccgccttc 132
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 82,386
Number of Sequences: 369679
Number of extensions: 82386
Number of successful extensions: 22221
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 22217
Number of HSP's gapped (non-prelim): 8
length of query: 878
length of database: 203,408,664
effective HSP length: 19
effective length of query: 859
effective length of database: 196,384,763
effective search space: 168694511417
effective search space used: 168694511417
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)