BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 129373.2.1
         (1297 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AI163944.1|AI163944  A051P70U Hybrid aspen plasmid librar...    42   0.052
gb|BU835401.1|BU835401  T073E05 Populus apical shoot cDNA li...    42   0.052
gb|CX178548.1|CX178548  D12_45-115_08.ab1 leaf inoculated wi...    42   0.052
gb|CX180630.1|CX180630  C05_45-49_05.ab1 leaf inoculated wit...    42   0.052
gb|CX186797.1|CX186797  C03_45-72_05.ab1 leaf inoculated wit...    42   0.052
gb|DT478676.1|DT478676  WS02523.BR_H18 PT-MB-N-A-15 Populus ...    42   0.052
gb|DT497907.1|DT497907  WS0113.BR_M22 PT-P-FL-A-2 Populus tr...    42   0.052

>gb|AI163944.1|AI163944 A051P70U Hybrid aspen plasmid library Populus tremula x Populus
            tremuloides cDNA 5', mRNA sequence
          Length = 417

 Score = 42.1 bits (21), Expect = 0.052
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 1157 tttgacctcgagaccccagaactccatcg 1185
            ||||||||| | |||||||||||||||||
Sbjct: 79   tttgacctcaacaccccagaactccatcg 51



>gb|BU835401.1|BU835401 T073E05 Populus apical shoot cDNA library Populus tremula x Populus
            tremuloides cDNA 5 prime, mRNA sequence
          Length = 411

 Score = 42.1 bits (21), Expect = 0.052
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 1157 tttgacctcgagaccccagaactccatcg 1185
            ||||||||| | |||||||||||||||||
Sbjct: 147  tttgacctcaacaccccagaactccatcg 119



>gb|CX178548.1|CX178548 D12_45-115_08.ab1 leaf inoculated with Marssonia pathogen of Populus
            euramericana Populus x canadensis cDNA, mRNA sequence
          Length = 741

 Score = 42.1 bits (21), Expect = 0.052
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 1157 tttgacctcgagaccccagaactccatcg 1185
            ||||||||| | |||||||||||||||||
Sbjct: 142  tttgacctcaacaccccagaactccatcg 114



>gb|CX180630.1|CX180630 C05_45-49_05.ab1 leaf inoculated with Marssonia pathogen of Populus
            euramericana Populus x canadensis cDNA, mRNA sequence
          Length = 632

 Score = 42.1 bits (21), Expect = 0.052
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 1157 tttgacctcgagaccccagaactccatcg 1185
            ||||||||| | |||||||||||||||||
Sbjct: 142  tttgacctcaacaccccagaactccatcg 114



>gb|CX186797.1|CX186797 C03_45-72_05.ab1 leaf inoculated with Marssonia pathogen of Populus
            euramericana Populus x canadensis cDNA, mRNA sequence
          Length = 589

 Score = 42.1 bits (21), Expect = 0.052
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 1157 tttgacctcgagaccccagaactccatcg 1185
            ||||||||| | |||||||||||||||||
Sbjct: 101  tttgacctcaacaccccagaactccatcg 73



>gb|DT478676.1|DT478676 WS02523.BR_H18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
            WS02523_H18 5', mRNA sequence
          Length = 780

 Score = 42.1 bits (21), Expect = 0.052
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 1157 tttgacctcgagaccccagaactccatcg 1185
            ||||||||| | |||||||||||||||||
Sbjct: 73   tttgacctcaacaccccagaactccatcg 45



>gb|DT497907.1|DT497907 WS0113.BR_M22 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0113_M22
            5', mRNA sequence
          Length = 681

 Score = 42.1 bits (21), Expect = 0.052
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 1157 tttgacctcgagaccccagaactccatcg 1185
            ||||||||| | |||||||||||||||||
Sbjct: 152  tttgacctcaacaccccagaactccatcg 124



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 192,003
Number of Sequences: 369679
Number of extensions: 192003
Number of successful extensions: 57709
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57699
Number of HSP's gapped (non-prelim): 10
length of query: 1297
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1278
effective length of database: 196,384,763
effective search space: 250979727114
effective search space used: 250979727114
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)