BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11001390.3.1
(588 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA926532.1|CA926532 MTU6CR.P16.B04 Aspen root cDNA Libra... 50 1e-004
gb|DT512757.1|DT512757 WS02420.B21_C18 PTxD-ICC-N-A-14 Popu... 50 1e-004
gb|CX178017.1|CX178017 A02_45-39_02.ab1 leaf inoculated wit... 40 0.092
gb|CX180811.1|CX180811 A05_45-68_01.ab1 leaf inoculated wit... 40 0.092
gb|CX182477.1|CX182477 C09_45-56_05.ab1 leaf inoculated wit... 40 0.092
gb|CA931640.1|CA931640 MTU4TA.P21.A10 Aspen apex cDNA Libra... 38 0.36
gb|CA931811.1|CA931811 MTU4TA.P23.C02 Aspen apex cDNA Libra... 38 0.36
gb|DV466288.1|DV466288 MTUNUL1.P49.F09 NUL Populus fremonti... 38 0.36
gb|BI070210.1|BI070210 C016P09U Populus strain T89 leaves P... 36 1.4
gb|BI070265.1|BI070265 C017P01U Populus strain T89 leaves P... 36 1.4
gb|BU826222.1|BU826222 UK118TA11 Populus apical shoot cDNA ... 36 1.4
gb|BU826395.1|BU826395 UK120TB06 Populus apical shoot cDNA ... 36 1.4
gb|BU827290.1|BU827290 UK130TH03 Populus apical shoot cDNA ... 36 1.4
gb|BU827633.1|BU827633 K006P19P Populus apical shoot cDNA l... 36 1.4
gb|BU828829.1|BU828829 K029P49P Populus apical shoot cDNA l... 36 1.4
gb|BU829033.1|BU829033 K033P40P Populus apical shoot cDNA l... 36 1.4
gb|BU829288.1|BU829288 K037P87P Populus apical shoot cDNA l... 36 1.4
gb|CA932215.1|CA932215 MTU5CS.P10.B02 Aspen stem cDNA Libra... 36 1.4
gb|CV234862.1|CV234862 WS01216.B21_K11 PT-GT-FL-A-3 Populus... 36 1.4
gb|CV235511.1|CV235511 WS0122.B21_G21 PT-GT-FL-A-3 Populus ... 36 1.4
gb|CV253946.1|CV253946 WS0223.B21_I09 PTxD-ICC-A-12 Populus... 36 1.4
gb|CV255753.1|CV255753 WS02414.B21_P09 PTxD-ICC-N-A-14 Popu... 36 1.4
gb|CV256453.1|CV256453 WS0243.B21_O07 PTxD-ICC-N-A-14 Popul... 36 1.4
gb|CV259749.1|CV259749 WS02012.B21_C20 PTxN-IB-N-A-11 Popul... 36 1.4
gb|CX184723.1|CX184723 B10_45-26_04.ab1 leaf inoculated wit... 36 1.4
gb|BP923523.1|BP923523 BP923523 full-length enriched poplar... 36 1.4
gb|DN484919.1|DN484919 K036P65.3pR Populus apical shoot cDN... 36 1.4
gb|DN503025.1|DN503025 X052A07.5pR Populus wood cDNA librar... 36 1.4
gb|DT471894.1|DT471894 WS0122.BR_G21 PT-GT-FL-A-3 Populus t... 36 1.4
gb|DT474115.1|DT474115 WS01230.BR_N18 PT-GT-FL-A-3 Populus ... 36 1.4
gb|DT476793.1|DT476793 WS01230.B21_N18 PT-GT-FL-A-3 Populus... 36 1.4
gb|DT488494.1|DT488494 WS02536.B21_J13 PT-MB-N-A-15 Populus... 36 1.4
gb|DV463202.1|DV463202 MTUNUL1.P13.A04 NUL Populus fremonti... 36 1.4
gb|DV463360.1|DV463360 MTUNUL1.P14.H11 NUL Populus fremonti... 36 1.4
gb|BI127335.1|BI127335 G058P78Y Populus cambium cDNA librar... 34 5.7
gb|BI127343.1|BI127343 G058P86Y Populus cambium cDNA librar... 34 5.7
gb|BI128418.1|BI128418 G075P56Y Populus cambium cDNA librar... 34 5.7
gb|BI128862.1|BI128862 G082P55Y Populus cambium cDNA librar... 34 5.7
gb|BI130837.1|BI130837 G111P47Y Populus cambium cDNA librar... 34 5.7
gb|BI131594.1|BI131594 G123P05Y Populus cambium cDNA librar... 34 5.7
gb|BU812657.1|BU812657 UL99TA01 Populus leaf cDNA library P... 34 5.7
gb|BU821516.1|BU821516 UB24CPB10 Populus tremula cambium cD... 34 5.7
gb|BU826352.1|BU826352 UK119TF02 Populus apical shoot cDNA ... 34 5.7
gb|BU866185.1|BU866185 S063F09 Populus imbibed seed cDNA li... 34 5.7
gb|BU871424.1|BU871424 Q030D09 Populus flower cDNA library ... 34 5.7
gb|BU896715.1|BU896715 X044F08 Populus wood cDNA library Po... 34 5.7
gb|CA924135.1|CA924135 MTU7CL.P2.B02 Aspen leaf cDNA Librar... 34 5.7
gb|CA924173.1|CA924173 MTU7CL.P2.F02 Aspen leaf cDNA Librar... 34 5.7
gb|CA927064.1|CA927064 MTU6CR.P4.E04 Aspen root cDNA Librar... 34 5.7
gb|CA933005.1|CA933005 MTU5CS.P2.C06 Aspen stem cDNA Librar... 34 5.7
gb|CF236393.1|CF236393 PtaJXT2C3C0305 Poplar cDNA library f... 34 5.7
gb|CK107886.1|CK107886 G058P78 Populus tension wood cDNA li... 34 5.7
gb|CK107894.1|CK107894 G058P86 Populus tension wood cDNA li... 34 5.7
gb|CK115022.1|CK115022 Y002F04 Populus infected leaf substr... 34 5.7
gb|AJ780557.1|AJ780557 AJ780557 Populus euphratica leaf 3-6... 34 5.7
gb|CV130556.1|CV130556 B9SP04b08 Populus stem seasonal libr... 34 5.7
gb|CV243188.1|CV243188 WS02518.B21_C12 PT-MB-N-A-15 Populus... 34 5.7
gb|CX170887.1|CX170887 E02_69-64_10.ab1 leaf inoculated wit... 34 5.7
gb|CX175703.1|CX175703 C06_69-40_06.ab1 leaf inoculated wit... 34 5.7
gb|CX178468.1|CX178468 F12_45-43_12.ab1 leaf inoculated wit... 34 5.7
gb|CX179357.1|CX179357 B05_45-119_03.ab1 leaf inoculated wi... 34 5.7
gb|CX179424.1|CX179424 C06_45-113_06.ab1 leaf inoculated wi... 34 5.7
gb|CX183675.1|CX183675 F04_45-18_12.ab1 leaf inoculated wit... 34 5.7
gb|CX653961.1|CX653961 PO02010G05 Poplar SC cDNA library Po... 34 5.7
gb|DN490885.1|DN490885 UL99TA01.3pR Populus cold stressed l... 34 5.7
gb|DN496569.1|DN496569 P078B11.5pR Populus petioles cDNA li... 34 5.7
gb|DN498708.1|DN498708 S063F09.5pR Populus imbibed seed cDN... 34 5.7
gb|DT477641.1|DT477641 WS02520.BR_I17 PT-MB-N-A-15 Populus ... 34 5.7
gb|DT482699.1|DT482699 WS02520.B21_I17 PT-MB-N-A-15 Populus... 34 5.7
gb|DT507278.1|DT507278 WS02417.BR_N09 PTxD-ICC-N-A-14 Popul... 34 5.7
gb|DT507556.1|DT507556 WS02418.BR_J08 PTxD-ICC-N-A-14 Popul... 34 5.7
gb|DT511915.1|DT511915 WS02417.B21_N09 PTxD-ICC-N-A-14 Popu... 34 5.7
gb|DT512182.1|DT512182 WS02418.B21_J08 PTxD-ICC-N-A-14 Popu... 34 5.7
gb|AY535003.1| Populus tremuloides endo-1,4-beta-glucanase ... 34 5.7
gb|AY660967.1| Populus tremula x Populus tremuloides Cel9A ... 34 5.7
>gb|CA926532.1|CA926532 MTU6CR.P16.B04 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 549
Score = 50.1 bits (25), Expect = 1e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 152 tatgattatgatgcaccaattgacgaatatggt 184
||||||||||| ||||||||||| |||||||||
Sbjct: 54 tatgattatgaggcaccaattgatgaatatggt 86
>gb|DT512757.1|DT512757 WS02420.B21_C18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_C18 3', mRNA sequence
Length = 869
Score = 50.1 bits (25), Expect = 1e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 152 tatgattatgatgcaccaattgacgaatatggt 184
||||||||||| ||||||||||| |||||||||
Sbjct: 661 tatgattatgaggcaccaattgatgaatatggt 629
>gb|CX178017.1|CX178017 A02_45-39_02.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 671
Score = 40.1 bits (20), Expect = 0.092
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 152 tatgattatgatgcaccaattgacgaatatggtatcttaagacaacctaagtgggggcat 211
|||||||| ||||| || |||| |||||||| | ||||| || ||||| ||||| |||
Sbjct: 392 tatgattacgatgctcctcttgatgaatatggactgttaaggcagcctaaatggggccat 451
Query: 212 ttgaaaga 219
||||||||
Sbjct: 452 ttgaaaga 459
>gb|CX180811.1|CX180811 A05_45-68_01.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.092
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 189 taagacaacctaagtgggggcatttgaa 216
||||||||||||||||||| ||| ||||
Sbjct: 26 taagacaacctaagtggggtcatctgaa 53
Score = 36.2 bits (18), Expect = 1.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 452 tggtctgtgagcatactaccagactg 477
|||||||||||||| ||||||||||
Sbjct: 247 tggtctgtgagcatcttaccagactg 272
>gb|CX182477.1|CX182477 C09_45-56_05.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 669
Score = 40.1 bits (20), Expect = 0.092
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 152 tatgattatgatgcaccaattgacgaatatggtatcttaagacaacctaagtgggggcat 211
|||||||| ||||| || |||| |||||||| | ||||| || ||||| ||||| |||
Sbjct: 360 tatgattacgatgctcctcttgatgaatatggactgttaaggcagcctaaatggggccat 419
Query: 212 ttgaaaga 219
||||||||
Sbjct: 420 ttgaaaga 427
>gb|CA931640.1|CA931640 MTU4TA.P21.A10 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 711
Score = 38.2 bits (19), Expect = 0.36
Identities = 58/71 (81%)
Strand = Plus / Minus
Query: 149 agctatgattatgatgcaccaattgacgaatatggtatcttaagacaacctaagtggggg 208
||||||||||||||||| || |||| |||||||| | || | || ||||| |||||
Sbjct: 484 agctatgattatgatgctcctcttgatgaatatggactgttgcggcagcctaaatggggc 425
Query: 209 catttgaaaga 219
|||||||||||
Sbjct: 424 catttgaaaga 414
Score = 36.2 bits (18), Expect = 1.4
Identities = 45/54 (83%)
Strand = Plus / Minus
Query: 82 aaattattacatgtattttggtggaaccaattttgagcggacagctggtggtcc 135
||||||||| |||||| ||| ||||| ||||||| || || |||||||||||
Sbjct: 551 aaattattatatgtatcatggaggaacaaattttggccgaactgctggtggtcc 498
>gb|CA931811.1|CA931811 MTU4TA.P23.C02 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 558
Score = 38.2 bits (19), Expect = 0.36
Identities = 58/71 (81%)
Strand = Plus / Minus
Query: 149 agctatgattatgatgcaccaattgacgaatatggtatcttaagacaacctaagtggggg 208
||||||||||||||||| || |||| |||||||| | || | || ||||| |||||
Sbjct: 484 agctatgattatgatgctcctcttgatgaatatggactgttgcggcagcctaaatggggc 425
Query: 209 catttgaaaga 219
|||||||||||
Sbjct: 424 catttgaaaga 414
Score = 36.2 bits (18), Expect = 1.4
Identities = 45/54 (83%)
Strand = Plus / Minus
Query: 82 aaattattacatgtattttggtggaaccaattttgagcggacagctggtggtcc 135
||||||||| |||||| ||| ||||| ||||||| || || |||||||||||
Sbjct: 551 aaattattatatgtatcatggaggaacaaattttggccgaactgctggtggtcc 498
>gb|DV466288.1|DV466288 MTUNUL1.P49.F09 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 865
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 450 catggtctgtgagcatact 468
|||||||||||||||||||
Sbjct: 46 catggtctgtgagcatact 64
>gb|BI070210.1|BI070210 C016P09U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 412
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 379 ttttcttgccaacattga 396
||||||||||||||||||
Sbjct: 127 ttttcttgccaacattga 110
>gb|BI070265.1|BI070265 C017P01U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 290
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 379 ttttcttgccaacattga 396
||||||||||||||||||
Sbjct: 109 ttttcttgccaacattga 92
>gb|BU826222.1|BU826222 UK118TA11 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 580
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 339 caaatggaagcatttcag 356
||||||||||||||||||
Sbjct: 506 caaatggaagcatttcag 523
>gb|BU826395.1|BU826395 UK120TB06 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 578
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 339 caaatggaagcatttcag 356
||||||||||||||||||
Sbjct: 504 caaatggaagcatttcag 521
>gb|BU827290.1|BU827290 UK130TH03 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 649
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 339 caaatggaagcatttcag 356
||||||||||||||||||
Sbjct: 506 caaatggaagcatttcag 523
>gb|BU827633.1|BU827633 K006P19P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 581
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 339 caaatggaagcatttcag 356
||||||||||||||||||
Sbjct: 469 caaatggaagcatttcag 486
>gb|BU828829.1|BU828829 K029P49P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 544
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 339 caaatggaagcatttcag 356
||||||||||||||||||
Sbjct: 471 caaatggaagcatttcag 488
>gb|BU829033.1|BU829033 K033P40P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 340
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 339 caaatggaagcatttcag 356
||||||||||||||||||
Sbjct: 311 caaatggaagcatttcag 328
>gb|BU829288.1|BU829288 K037P87P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 506
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 339 caaatggaagcatttcag 356
||||||||||||||||||
Sbjct: 482 caaatggaagcatttcag 499
>gb|CA932215.1|CA932215 MTU5CS.P10.B02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 668
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 379 ttttcttgccaacattga 396
||||||||||||||||||
Sbjct: 83 ttttcttgccaacattga 66
>gb|CV234862.1|CV234862 WS01216.B21_K11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01216_K11 3', mRNA sequence
Length = 538
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 379 ttttcttgccaacattga 396
||||||||||||||||||
Sbjct: 388 ttttcttgccaacattga 405
>gb|CV235511.1|CV235511 WS0122.B21_G21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0122_G21 3', mRNA sequence
Length = 600
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 379 ttttcttgccaacattga 396
||||||||||||||||||
Sbjct: 390 ttttcttgccaacattga 407
>gb|CV253946.1|CV253946 WS0223.B21_I09 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0223_I09 3', mRNA sequence
Length = 673
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 71 ggaagcttacaaaattat 88
||||||||||||||||||
Sbjct: 631 ggaagcttacaaaattat 614
>gb|CV255753.1|CV255753 WS02414.B21_P09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02414_P09 3', mRNA sequence
Length = 739
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 71 ggaagcttacaaaattat 88
||||||||||||||||||
Sbjct: 737 ggaagcttacaaaattat 720
>gb|CV256453.1|CV256453 WS0243.B21_O07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0243_O07 3', mRNA sequence
Length = 855
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 71 ggaagcttacaaaattat 88
||||||||||||||||||
Sbjct: 742 ggaagcttacaaaattat 725
>gb|CV259749.1|CV259749 WS02012.B21_C20 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_C20 3', mRNA sequence
Length = 471
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 336 acacaaatggaagcattt 353
||||||||||||||||||
Sbjct: 281 acacaaatggaagcattt 264
>gb|CX184723.1|CX184723 B10_45-26_04.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 720
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 379 ttttcttgccaacattga 396
||||||||||||||||||
Sbjct: 134 ttttcttgccaacattga 117
>gb|BP923523.1|BP923523 BP923523 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-020_L16.f 5', mRNA sequence
Length = 374
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 379 ttttcttgccaacattga 396
||||||||||||||||||
Sbjct: 175 ttttcttgccaacattga 158
>gb|DN484919.1|DN484919 K036P65.3pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone K036P65 3', mRNA sequence
Length = 480
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 395 gatgaacataaatatgct 412
||||||||||||||||||
Sbjct: 278 gatgaacataaatatgct 295
>gb|DN503025.1|DN503025 X052A07.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X052A07 5', mRNA sequence
Length = 587
Score = 36.2 bits (18), Expect = 1.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 452 tggtctgtgagcatactaccagactg 477
|||||||||||||| ||||||||||
Sbjct: 152 tggtctgtgagcatcttaccagactg 177
>gb|DT471894.1|DT471894 WS0122.BR_G21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0122_G21 5', mRNA sequence
Length = 515
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 379 ttttcttgccaacattga 396
||||||||||||||||||
Sbjct: 180 ttttcttgccaacattga 163
>gb|DT474115.1|DT474115 WS01230.BR_N18 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01230_N18 5', mRNA sequence
Length = 567
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 379 ttttcttgccaacattga 396
||||||||||||||||||
Sbjct: 180 ttttcttgccaacattga 163
>gb|DT476793.1|DT476793 WS01230.B21_N18 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01230_N18 3', mRNA sequence
Length = 567
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 379 ttttcttgccaacattga 396
||||||||||||||||||
Sbjct: 388 ttttcttgccaacattga 405
>gb|DT488494.1|DT488494 WS02536.B21_J13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02536_J13 3', mRNA sequence
Length = 880
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 71 ggaagcttacaaaattat 88
||||||||||||||||||
Sbjct: 607 ggaagcttacaaaattat 590
>gb|DV463202.1|DV463202 MTUNUL1.P13.A04 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 805
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 379 ttttcttgccaacattga 396
||||||||||||||||||
Sbjct: 166 ttttcttgccaacattga 149
>gb|DV463360.1|DV463360 MTUNUL1.P14.H11 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 720
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 379 ttttcttgccaacattga 396
||||||||||||||||||
Sbjct: 93 ttttcttgccaacattga 76
>gb|BI127335.1|BI127335 G058P78Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 537
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 231 ctattaaactttgtgaa 247
|||||||||||||||||
Sbjct: 182 ctattaaactttgtgaa 166
>gb|BI127343.1|BI127343 G058P86Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 455
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 231 ctattaaactttgtgaa 247
|||||||||||||||||
Sbjct: 266 ctattaaactttgtgaa 250
>gb|BI128418.1|BI128418 G075P56Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 539
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 231 ctattaaactttgtgaa 247
|||||||||||||||||
Sbjct: 78 ctattaaactttgtgaa 62
>gb|BI128862.1|BI128862 G082P55Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 428
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 231 ctattaaactttgtgaa 247
|||||||||||||||||
Sbjct: 147 ctattaaactttgtgaa 131
>gb|BI130837.1|BI130837 G111P47Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 492
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 231 ctattaaactttgtgaa 247
|||||||||||||||||
Sbjct: 36 ctattaaactttgtgaa 20
>gb|BI131594.1|BI131594 G123P05Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 436
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 231 ctattaaactttgtgaa 247
|||||||||||||||||
Sbjct: 285 ctattaaactttgtgaa 269
>gb|BU812657.1|BU812657 UL99TA01 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 633
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 409 tgcttcagtctggatttttgg 429
|||||||| ||||||||||||
Sbjct: 58 tgcttcaggctggatttttgg 78
>gb|BU821516.1|BU821516 UB24CPB10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 449
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 231 ctattaaactttgtgaa 247
|||||||||||||||||
Sbjct: 65 ctattaaactttgtgaa 49
>gb|BU826352.1|BU826352 UK119TF02 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 543
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 409 tgcttcagtctggatttttgg 429
|||||||| ||||||||||||
Sbjct: 508 tgcttcaggctggatttttgg 528
>gb|BU866185.1|BU866185 S063F09 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 745
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 412 ttcagtctggatttttg 428
|||||||||||||||||
Sbjct: 153 ttcagtctggatttttg 169
>gb|BU871424.1|BU871424 Q030D09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 603
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 412 ttcagtctggatttttg 428
|||||||||||||||||
Sbjct: 145 ttcagtctggatttttg 161
>gb|BU896715.1|BU896715 X044F08 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 652
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 231 ctattaaactttgtgaa 247
|||||||||||||||||
Sbjct: 396 ctattaaactttgtgaa 380
>gb|CA924135.1|CA924135 MTU7CL.P2.B02 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 657
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 39 gcttttgctgttgctcg 55
|||||||||||||||||
Sbjct: 233 gcttttgctgttgctcg 249
>gb|CA924173.1|CA924173 MTU7CL.P2.F02 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 647
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 39 gcttttgctgttgctcg 55
|||||||||||||||||
Sbjct: 233 gcttttgctgttgctcg 249
>gb|CA927064.1|CA927064 MTU6CR.P4.E04 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 254
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 231 ctattaaactttgtgaa 247
|||||||||||||||||
Sbjct: 132 ctattaaactttgtgaa 116
>gb|CA933005.1|CA933005 MTU5CS.P2.C06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 185
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 231 ctattaaactttgtgaa 247
|||||||||||||||||
Sbjct: 63 ctattaaactttgtgaa 47
>gb|CF236393.1|CF236393 PtaJXT2C3C0305 Poplar cDNA library from young tension xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 657
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 231 ctattaaactttgtgaa 247
|||||||||||||||||
Sbjct: 55 ctattaaactttgtgaa 39
>gb|CK107886.1|CK107886 G058P78 Populus tension wood cDNA library Populus tremula x Populus
tremuloides cDNA clone G058P78 5', mRNA sequence
Length = 515
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 231 ctattaaactttgtgaa 247
|||||||||||||||||
Sbjct: 188 ctattaaactttgtgaa 172
>gb|CK107894.1|CK107894 G058P86 Populus tension wood cDNA library Populus tremula x Populus
tremuloides cDNA clone G058P86 5', mRNA sequence
Length = 523
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 231 ctattaaactttgtgaa 247
|||||||||||||||||
Sbjct: 266 ctattaaactttgtgaa 250
>gb|CK115022.1|CK115022 Y002F04 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y002F04 5', mRNA sequence
Length = 568
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 231 ctattaaactttgtgaa 247
|||||||||||||||||
Sbjct: 283 ctattaaactttgtgaa 267
>gb|AJ780557.1|AJ780557 AJ780557 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000900009F04F1, mRNA sequence
Length = 534
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 195 aacctaagtgggggcatttga 215
|||| ||||||||||||||||
Sbjct: 435 aaccaaagtgggggcatttga 415
>gb|CV130556.1|CV130556 B9SP04b08 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 860
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 231 ctattaaactttgtgaa 247
|||||||||||||||||
Sbjct: 133 ctattaaactttgtgaa 117
>gb|CV243188.1|CV243188 WS02518.B21_C12 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02518_C12 3', mRNA sequence
Length = 850
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 445 accaccatggtctgtga 461
|||||||||||||||||
Sbjct: 475 accaccatggtctgtga 459
>gb|CX170887.1|CX170887 E02_69-64_10.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 635
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 412 ttcagtctggatttttg 428
|||||||||||||||||
Sbjct: 148 ttcagtctggatttttg 164
>gb|CX175703.1|CX175703 C06_69-40_06.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 679
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 231 ctattaaactttgtgaa 247
|||||||||||||||||
Sbjct: 234 ctattaaactttgtgaa 218
>gb|CX178468.1|CX178468 F12_45-43_12.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 659
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 412 ttcagtctggatttttg 428
|||||||||||||||||
Sbjct: 159 ttcagtctggatttttg 175
>gb|CX179357.1|CX179357 B05_45-119_03.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 717
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 445 accaccatggtctgtga 461
|||||||||||||||||
Sbjct: 451 accaccatggtctgtga 467
>gb|CX179424.1|CX179424 C06_45-113_06.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 711
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 412 ttcagtctggatttttg 428
|||||||||||||||||
Sbjct: 199 ttcagtctggatttttg 215
>gb|CX183675.1|CX183675 F04_45-18_12.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 589
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 195 aacctaagtgggggcatttga 215
|||| ||||||||||||||||
Sbjct: 273 aaccaaagtgggggcatttga 293
>gb|CX653961.1|CX653961 PO02010G05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02010G05 5', mRNA sequence
Length = 537
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 445 accaccatggtctgtga 461
|||||||||||||||||
Sbjct: 95 accaccatggtctgtga 111
>gb|DN490885.1|DN490885 UL99TA01.3pR Populus cold stressed leaves cDNA library Populus
tremula x Populus tremuloides cDNA clone UL99TA01 3',
mRNA sequence
Length = 607
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 409 tgcttcagtctggatttttgg 429
|||||||| ||||||||||||
Sbjct: 550 tgcttcaggctggatttttgg 530
>gb|DN496569.1|DN496569 P078B11.5pR Populus petioles cDNA library Populus tremula cDNA
clone P078B11 5', mRNA sequence
Length = 830
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 231 ctattaaactttgtgaa 247
|||||||||||||||||
Sbjct: 76 ctattaaactttgtgaa 60
>gb|DN498708.1|DN498708 S063F09.5pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S063F09 5', mRNA sequence
Length = 694
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 412 ttcagtctggatttttg 428
|||||||||||||||||
Sbjct: 154 ttcagtctggatttttg 170
>gb|DT477641.1|DT477641 WS02520.BR_I17 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_I17 5', mRNA sequence
Length = 794
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 412 ttcagtctggatttttg 428
|||||||||||||||||
Sbjct: 120 ttcagtctggatttttg 136
>gb|DT482699.1|DT482699 WS02520.B21_I17 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_I17 3', mRNA sequence
Length = 904
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 412 ttcagtctggatttttg 428
|||||||||||||||||
Sbjct: 825 ttcagtctggatttttg 809
>gb|DT507278.1|DT507278 WS02417.BR_N09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_N09 5', mRNA sequence
Length = 437
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 409 tgcttcagtctggatttttgg 429
|||||||| ||||||||||||
Sbjct: 311 tgcttcaggctggatttttgg 291
>gb|DT507556.1|DT507556 WS02418.BR_J08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_J08 5', mRNA sequence
Length = 806
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 403 taaatatgcttcagtct 419
|||||||||||||||||
Sbjct: 641 taaatatgcttcagtct 657
>gb|DT511915.1|DT511915 WS02417.B21_N09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_N09 3', mRNA sequence
Length = 438
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 409 tgcttcagtctggatttttgg 429
|||||||| ||||||||||||
Sbjct: 128 tgcttcaggctggatttttgg 148
>gb|DT512182.1|DT512182 WS02418.B21_J08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_J08 3', mRNA sequence
Length = 835
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 403 taaatatgcttcagtct 419
|||||||||||||||||
Sbjct: 515 taaatatgcttcagtct 499
>gb|AY535003.1| Populus tremuloides endo-1,4-beta-glucanase (Kor1) mRNA, complete cds
Length = 2562
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 231 ctattaaactttgtgaa 247
|||||||||||||||||
Sbjct: 1539 ctattaaactttgtgaa 1523
>gb|AY660967.1| Populus tremula x Populus tremuloides Cel9A mRNA, complete cds
Length = 1860
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 231 ctattaaactttgtgaa 247
|||||||||||||||||
Sbjct: 1277 ctattaaactttgtgaa 1261
Database: Populus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:31 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 67,235
Number of Sequences: 369679
Number of extensions: 67235
Number of successful extensions: 18098
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18010
Number of HSP's gapped (non-prelim): 88
length of query: 588
length of database: 203,408,664
effective HSP length: 19
effective length of query: 569
effective length of database: 196,384,763
effective search space: 111742930147
effective search space used: 111742930147
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)