BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCS9f07.yg.2.1
         (394 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DN609829.1|DN609829  EST962879 Subtracted pine embryo lib...    34   4.0  
gb|AF027337.1|AF027337  Pinus taeda NADPH:protochlorophyllid...    34   4.0  

>gb|DN609829.1|DN609829 EST962879 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
           clone PSAAI03, mRNA sequence
          Length = 927

 Score = 34.2 bits (17), Expect = 4.0
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 359 aagagctttgaaagaat 375
           |||||||||||||||||
Sbjct: 270 aagagctttgaaagaat 254



>gb|AF027337.1|AF027337 Pinus taeda NADPH:protochlorophyllide oxidoreductase (por)
            pseudogene, partial sequence
          Length = 1653

 Score = 34.2 bits (17), Expect = 4.0
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 34   aaattctgtatagtttc 50
            |||||||||||||||||
Sbjct: 1405 aaattctgtatagtttc 1389



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  May 2, 2006  3:25 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 41,448
Number of Sequences: 355925
Number of extensions: 41448
Number of successful extensions: 14704
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14702
Number of HSP's gapped (non-prelim): 2
length of query: 394
length of database: 217,277,237
effective HSP length: 18
effective length of query: 376
effective length of database: 210,870,587
effective search space: 79287340712
effective search space used: 79287340712
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)