BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCK30g08.yg.2.1
(164 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT628979.1|DT628979 EST1155549 Subtracted pine embryo li... 52 7e-006
gb|DN610887.1|DN610887 EST963937 Subtracted pine embryo lib... 50 3e-005
gb|DN614992.1|DN614992 EST968042 Subtracted pine embryo lib... 50 3e-005
gb|DN609659.1|DN609659 EST962709 Subtracted pine embryo lib... 48 1e-004
gb|DN609756.1|DN609756 EST962806 Subtracted pine embryo lib... 48 1e-004
gb|DN613889.1|DN613889 EST966939 Subtracted pine embryo lib... 48 1e-004
gb|DT627965.1|DT627965 EST1156714 Subtracted pine embryo li... 48 1e-004
gb|DT628781.1|DT628781 EST1155351 Subtracted pine embryo li... 48 1e-004
gb|DT629255.1|DT629255 EST1155825 Subtracted pine embryo li... 48 1e-004
gb|DN614173.1|DN614173 EST967223 Subtracted pine embryo lib... 46 4e-004
gb|DT629126.1|DT629126 EST1155696 Subtracted pine embryo li... 46 4e-004
gb|CR394064.1|CR394064 CR394064 RN Pinus pinaster cDNA clon... 42 0.006
gb|DN609177.1|DN609177 EST962227 Subtracted pine embryo lib... 40 0.025
gb|DT629346.1|DT629346 EST1155916 Subtracted pine embryo li... 40 0.025
gb|DN611170.1|DN611170 EST964220 Subtracted pine embryo lib... 38 0.10
gb|DN611889.1|DN611889 EST964939 Subtracted pine embryo lib... 38 0.10
gb|DT627831.1|DT627831 EST1156580 Subtracted pine embryo li... 38 0.10
gb|DT628166.1|DT628166 EST1156915 Subtracted pine embryo li... 38 0.10
gb|DT628630.1|DT628630 EST1155200 Subtracted pine embryo li... 38 0.10
gb|DT629682.1|DT629682 EST1156252 Subtracted pine embryo li... 38 0.10
gb|DT629839.1|DT629839 EST1154251 Subtracted pine embryo li... 38 0.10
gb|DT629894.1|DT629894 EST1154306 Subtracted pine embryo li... 38 0.10
gb|DT630312.1|DT630312 EST1154724 Subtracted pine embryo li... 38 0.10
gb|DT630487.1|DT630487 EST1154899 Subtracted pine embryo li... 38 0.10
gb|DT630711.1|DT630711 EST1155123 Subtracted pine embryo li... 38 0.10
gb|CB074821.1|CB074821 EST00047 Fusarium circinatum induced... 36 0.40
gb|CN852427.1|CN852427 H2 Healthy pine stem suppression sub... 36 0.40
gb|DN609833.1|DN609833 EST962883 Subtracted pine embryo lib... 36 0.40
gb|DN614410.1|DN614410 EST967460 Subtracted pine embryo lib... 36 0.40
gb|DN614470.1|DN614470 EST967520 Subtracted pine embryo lib... 36 0.40
gb|DN614515.1|DN614515 EST967565 Subtracted pine embryo lib... 36 0.40
gb|DN614567.1|DN614567 EST967617 Subtracted pine embryo lib... 36 0.40
gb|DN615164.1|DN615164 EST968214 Subtracted pine embryo lib... 36 0.40
gb|DT628411.1|DT628411 EST1157160 Subtracted pine embryo li... 36 0.40
gb|DT629770.1|DT629770 EST1154182 Subtracted pine embryo li... 36 0.40
gb|DT629886.1|DT629886 EST1154298 Subtracted pine embryo li... 36 0.40
gb|DT629931.1|DT629931 EST1154343 Subtracted pine embryo li... 36 0.40
gb|DT629970.1|DT629970 EST1154382 Subtracted pine embryo li... 36 0.40
gb|DT630051.1|DT630051 EST1154463 Subtracted pine embryo li... 36 0.40
gb|DT630337.1|DT630337 EST1154749 Subtracted pine embryo li... 36 0.40
gb|DT630351.1|DT630351 EST1154763 Subtracted pine embryo li... 36 0.40
gb|DT630363.1|DT630363 EST1154775 Subtracted pine embryo li... 36 0.40
gb|DT630564.1|DT630564 EST1154976 Subtracted pine embryo li... 36 0.40
gb|DT630610.1|DT630610 EST1155022 Subtracted pine embryo li... 36 0.40
gb|DT630692.1|DT630692 EST1155104 Subtracted pine embryo li... 36 0.40
>gb|DT628979.1|DT628979 EST1155549 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD423 5' end, mRNA sequence
Length = 738
Score = 52.0 bits (26), Expect = 7e-006
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 139 aggtacctgccgggcggccgctcgaa 164
||||||||||||||||||||||||||
Sbjct: 26 aggtacctgccgggcggccgctcgaa 1
>gb|DN610887.1|DN610887 EST963937 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAV26, mRNA sequence
Length = 293
Score = 50.1 bits (25), Expect = 3e-005
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 140 ggtacctgccgggcggccgctcgaa 164
|||||||||||||||||||||||||
Sbjct: 269 ggtacctgccgggcggccgctcgaa 293
>gb|DN614992.1|DN614992 EST968042 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSACA55, mRNA sequence
Length = 293
Score = 50.1 bits (25), Expect = 3e-005
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 140 ggtacctgccgggcggccgctcgaa 164
|||||||||||||||||||||||||
Sbjct: 269 ggtacctgccgggcggccgctcgaa 293
>gb|DN609659.1|DN609659 EST962709 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAF58, mRNA sequence
Length = 268
Score = 48.1 bits (24), Expect = 1e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 140 ggtacctgccgggcggccgctcga 163
||||||||||||||||||||||||
Sbjct: 24 ggtacctgccgggcggccgctcga 1
>gb|DN609756.1|DN609756 EST962806 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAH07, mRNA sequence
Length = 268
Score = 48.1 bits (24), Expect = 1e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 140 ggtacctgccgggcggccgctcga 163
||||||||||||||||||||||||
Sbjct: 24 ggtacctgccgggcggccgctcga 1
>gb|DN613889.1|DN613889 EST966939 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABX58, mRNA sequence
Length = 319
Score = 48.1 bits (24), Expect = 1e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 141 gtacctgccgggcggccgctcgaa 164
||||||||||||||||||||||||
Sbjct: 296 gtacctgccgggcggccgctcgaa 319
>gb|DT627965.1|DT627965 EST1156714 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCS71 5' end, mRNA sequence
Length = 639
Score = 48.1 bits (24), Expect = 1e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 141 gtacctgccgggcggccgctcgaa 164
||||||||||||||||||||||||
Sbjct: 24 gtacctgccgggcggccgctcgaa 1
>gb|DT628781.1|DT628781 EST1155351 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD191 5' end, mRNA sequence
Length = 639
Score = 48.1 bits (24), Expect = 1e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 141 gtacctgccgggcggccgctcgaa 164
||||||||||||||||||||||||
Sbjct: 24 gtacctgccgggcggccgctcgaa 1
>gb|DT629255.1|DT629255 EST1155825 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD732 5' end, mRNA sequence
Length = 571
Score = 48.1 bits (24), Expect = 1e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 141 gtacctgccgggcggccgctcgaa 164
||||||||||||||||||||||||
Sbjct: 24 gtacctgccgggcggccgctcgaa 1
>gb|DN614173.1|DN614173 EST967223 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAC091, mRNA sequence
Length = 441
Score = 46.1 bits (23), Expect = 4e-004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 141 gtacctgccgggcggccgctcga 163
|||||||||||||||||||||||
Sbjct: 23 gtacctgccgggcggccgctcga 1
>gb|DT629126.1|DT629126 EST1155696 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD588 5' end, mRNA sequence
Length = 441
Score = 46.1 bits (23), Expect = 4e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 141 gtacctgccgggcggccgctcga 163
|||||||||||||||||||||||
Sbjct: 419 gtacctgccgggcggccgctcga 441
>gb|CR394064.1|CR394064 CR394064 RN Pinus pinaster cDNA clone RN73C04, mRNA sequence
Length = 205
Score = 42.1 bits (21), Expect = 0.006
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 140 ggtacctgccgggcggccgctcgaa 164
|||||||||| ||||||||||||||
Sbjct: 40 ggtacctgcccggcggccgctcgaa 16
>gb|DN609177.1|DN609177 EST962227 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAA956, mRNA sequence
Length = 230
Score = 40.1 bits (20), Expect = 0.025
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 141 gtacctgccgggcggccgctcgaa 164
||||||||| ||||||||||||||
Sbjct: 207 gtacctgcccggcggccgctcgaa 230
>gb|DT629346.1|DT629346 EST1155916 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD838 5' end, mRNA sequence
Length = 887
Score = 40.1 bits (20), Expect = 0.025
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 141 gtacctgccgggcggccgctcgaa 164
||||||||| ||||||||||||||
Sbjct: 24 gtacctgcccggcggccgctcgaa 1
>gb|DN611170.1|DN611170 EST964220 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAY65, mRNA sequence
Length = 429
Score = 38.2 bits (19), Expect = 0.10
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 141 gtacctgccgggcggccgctcga 163
||||||||| |||||||||||||
Sbjct: 23 gtacctgcccggcggccgctcga 1
>gb|DN611889.1|DN611889 EST964939 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAB806, mRNA sequence
Length = 789
Score = 38.2 bits (19), Expect = 0.10
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 141 gtacctgccgggcggccgctcga 163
||||||||| |||||||||||||
Sbjct: 23 gtacctgcccggcggccgctcga 1
>gb|DT627831.1|DT627831 EST1156580 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCR22 5' end, mRNA sequence
Length = 923
Score = 38.2 bits (19), Expect = 0.10
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 141 gtacctgccgggcggccgctcga 163
||||||||| |||||||||||||
Sbjct: 901 gtacctgcccggcggccgctcga 923
>gb|DT628166.1|DT628166 EST1156915 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCV04 5' end, mRNA sequence
Length = 373
Score = 38.2 bits (19), Expect = 0.10
Identities = 29/31 (93%), Gaps = 1/31 (3%)
Strand = Plus / Minus
Query: 131 ttttacttaggtacctgcc-gggcggccgct 160
|||||||| |||||||||| |||||||||||
Sbjct: 36 ttttacttcggtacctgcccgggcggccgct 6
>gb|DT628630.1|DT628630 EST1155200 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD018 5' end, mRNA sequence
Length = 905
Score = 38.2 bits (19), Expect = 0.10
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 141 gtacctgccgggcggccgctcga 163
||||||||| |||||||||||||
Sbjct: 883 gtacctgcccggcggccgctcga 905
>gb|DT629682.1|DT629682 EST1156252 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMDD50 5' end, mRNA sequence
Length = 799
Score = 38.2 bits (19), Expect = 0.10
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 141 gtacctgccgggcggccgctcga 163
||||||||| |||||||||||||
Sbjct: 777 gtacctgcccggcggccgctcga 799
>gb|DT629839.1|DT629839 EST1154251 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME145, mRNA sequence
Length = 322
Score = 38.2 bits (19), Expect = 0.10
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 139 aggtacctgcc-gggcggccgctcgaa 164
||||||||||| |||||||||||||||
Sbjct: 296 aggtacctgcccgggcggccgctcgaa 322
>gb|DT629894.1|DT629894 EST1154306 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME225, mRNA sequence
Length = 670
Score = 38.2 bits (19), Expect = 0.10
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 139 aggtacctgcc-gggcggccgctcgaa 164
||||||||||| |||||||||||||||
Sbjct: 644 aggtacctgcccgggcggccgctcgaa 670
>gb|DT630312.1|DT630312 EST1154724 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME740, mRNA sequence
Length = 415
Score = 38.2 bits (19), Expect = 0.10
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Minus
Query: 138 taggtacctgcc-gggcggccgctcga 163
|||||||||||| ||||||||||||||
Sbjct: 27 taggtacctgcccgggcggccgctcga 1
>gb|DT630487.1|DT630487 EST1154899 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME949, mRNA sequence
Length = 447
Score = 38.2 bits (19), Expect = 0.10
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Minus
Query: 138 taggtacctgcc-gggcggccgctcga 163
|||||||||||| ||||||||||||||
Sbjct: 27 taggtacctgcccgggcggccgctcga 1
>gb|DT630711.1|DT630711 EST1155123 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIMEC12, mRNA sequence
Length = 530
Score = 38.2 bits (19), Expect = 0.10
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 139 aggtacctgcc-gggcggccgctcgaa 164
||||||||||| |||||||||||||||
Sbjct: 504 aggtacctgcccgggcggccgctcgaa 530
>gb|CB074821.1|CB074821 EST00047 Fusarium circinatum induced cDNA library from Pinus patula
Pinus patula cDNA clone ABO000b49 3', mRNA sequence
Length = 300
Score = 36.2 bits (18), Expect = 0.40
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 143 acctgccgggcggccgctcgaa 164
||||||| ||||||||||||||
Sbjct: 227 acctgcccggcggccgctcgaa 248
>gb|CN852427.1|CN852427 H2 Healthy pine stem suppression subtraction hybridization library
Pinus taeda cDNA, mRNA sequence
Length = 692
Score = 36.2 bits (18), Expect = 0.40
Identities = 25/26 (96%), Gaps = 1/26 (3%)
Strand = Plus / Minus
Query: 140 ggtacctgcc-gggcggccgctcgaa 164
|||||||||| |||||||||||||||
Sbjct: 54 ggtacctgcccgggcggccgctcgaa 29
>gb|DN609833.1|DN609833 EST962883 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAI07, mRNA sequence
Length = 177
Score = 36.2 bits (18), Expect = 0.40
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 147 gccgggcggccgctcgaa 164
||||||||||||||||||
Sbjct: 160 gccgggcggccgctcgaa 177
>gb|DN614410.1|DN614410 EST967460 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAC374, mRNA sequence
Length = 521
Score = 36.2 bits (18), Expect = 0.40
Identities = 27/29 (93%), Gaps = 2/29 (6%)
Strand = Plus / Plus
Query: 138 taggtacctgcc--gggcggccgctcgaa 164
|||||||||||| |||||||||||||||
Sbjct: 493 taggtacctgccccgggcggccgctcgaa 521
>gb|DN614470.1|DN614470 EST967520 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAC442, mRNA sequence
Length = 576
Score = 36.2 bits (18), Expect = 0.40
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 147 gccgggcggccgctcgaa 164
||||||||||||||||||
Sbjct: 559 gccgggcggccgctcgaa 576
>gb|DN614515.1|DN614515 EST967565 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAC487, mRNA sequence
Length = 472
Score = 36.2 bits (18), Expect = 0.40
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 147 gccgggcggccgctcgaa 164
||||||||||||||||||
Sbjct: 455 gccgggcggccgctcgaa 472
>gb|DN614567.1|DN614567 EST967617 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAC553, mRNA sequence
Length = 572
Score = 36.2 bits (18), Expect = 0.40
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 147 gccgggcggccgctcgaa 164
||||||||||||||||||
Sbjct: 555 gccgggcggccgctcgaa 572
>gb|DN615164.1|DN615164 EST968214 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSACC61, mRNA sequence
Length = 521
Score = 36.2 bits (18), Expect = 0.40
Identities = 27/29 (93%), Gaps = 2/29 (6%)
Strand = Plus / Plus
Query: 138 taggtacctgcc--gggcggccgctcgaa 164
|||||||||||| |||||||||||||||
Sbjct: 493 taggtacctgccccgggcggccgctcgaa 521
>gb|DT628411.1|DT628411 EST1157160 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCX70 5' end, mRNA sequence
Length = 910
Score = 36.2 bits (18), Expect = 0.40
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 141 gtacctgccgggcggccgctcg 162
||||||||| ||||||||||||
Sbjct: 889 gtacctgcccggcggccgctcg 910
>gb|DT629770.1|DT629770 EST1154182 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME049, mRNA sequence
Length = 360
Score = 36.2 bits (18), Expect = 0.40
Identities = 25/26 (96%), Gaps = 1/26 (3%)
Strand = Plus / Plus
Query: 140 ggtacctgcc-gggcggccgctcgaa 164
|||||||||| |||||||||||||||
Sbjct: 335 ggtacctgcccgggcggccgctcgaa 360
>gb|DT629886.1|DT629886 EST1154298 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME212, mRNA sequence
Length = 303
Score = 36.2 bits (18), Expect = 0.40
Identities = 25/26 (96%), Gaps = 1/26 (3%)
Strand = Plus / Plus
Query: 140 ggtacctgcc-gggcggccgctcgaa 164
|||||||||| |||||||||||||||
Sbjct: 278 ggtacctgcccgggcggccgctcgaa 303
>gb|DT629931.1|DT629931 EST1154343 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME281, mRNA sequence
Length = 447
Score = 36.2 bits (18), Expect = 0.40
Identities = 25/26 (96%), Gaps = 1/26 (3%)
Strand = Plus / Plus
Query: 140 ggtacctgcc-gggcggccgctcgaa 164
|||||||||| |||||||||||||||
Sbjct: 422 ggtacctgcccgggcggccgctcgaa 447
>gb|DT629970.1|DT629970 EST1154382 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME336, mRNA sequence
Length = 488
Score = 36.2 bits (18), Expect = 0.40
Identities = 25/26 (96%), Gaps = 1/26 (3%)
Strand = Plus / Plus
Query: 140 ggtacctgcc-gggcggccgctcgaa 164
|||||||||| |||||||||||||||
Sbjct: 463 ggtacctgcccgggcggccgctcgaa 488
>gb|DT630051.1|DT630051 EST1154463 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME446, mRNA sequence
Length = 688
Score = 36.2 bits (18), Expect = 0.40
Identities = 25/26 (96%), Gaps = 1/26 (3%)
Strand = Plus / Minus
Query: 139 aggtacctgcc-gggcggccgctcga 163
||||||||||| ||||||||||||||
Sbjct: 26 aggtacctgcccgggcggccgctcga 1
>gb|DT630337.1|DT630337 EST1154749 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME768, mRNA sequence
Length = 488
Score = 36.2 bits (18), Expect = 0.40
Identities = 25/26 (96%), Gaps = 1/26 (3%)
Strand = Plus / Plus
Query: 140 ggtacctgcc-gggcggccgctcgaa 164
|||||||||| |||||||||||||||
Sbjct: 463 ggtacctgcccgggcggccgctcgaa 488
>gb|DT630351.1|DT630351 EST1154763 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME784, mRNA sequence
Length = 547
Score = 36.2 bits (18), Expect = 0.40
Identities = 25/26 (96%), Gaps = 1/26 (3%)
Strand = Plus / Plus
Query: 140 ggtacctgcc-gggcggccgctcgaa 164
|||||||||| |||||||||||||||
Sbjct: 522 ggtacctgcccgggcggccgctcgaa 547
>gb|DT630363.1|DT630363 EST1154775 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME803, mRNA sequence
Length = 159
Score = 36.2 bits (18), Expect = 0.40
Identities = 25/26 (96%), Gaps = 1/26 (3%)
Strand = Plus / Plus
Query: 140 ggtacctgcc-gggcggccgctcgaa 164
|||||||||| |||||||||||||||
Sbjct: 134 ggtacctgcccgggcggccgctcgaa 159
>gb|DT630564.1|DT630564 EST1154976 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIMEA45, mRNA sequence
Length = 242
Score = 36.2 bits (18), Expect = 0.40
Identities = 25/26 (96%), Gaps = 1/26 (3%)
Strand = Plus / Plus
Query: 140 ggtacctgcc-gggcggccgctcgaa 164
|||||||||| |||||||||||||||
Sbjct: 217 ggtacctgcccgggcggccgctcgaa 242
>gb|DT630610.1|DT630610 EST1155022 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIMEA96, mRNA sequence
Length = 239
Score = 36.2 bits (18), Expect = 0.40
Identities = 25/26 (96%), Gaps = 1/26 (3%)
Strand = Plus / Plus
Query: 140 ggtacctgcc-gggcggccgctcgaa 164
|||||||||| |||||||||||||||
Sbjct: 214 ggtacctgcccgggcggccgctcgaa 239
>gb|DT630692.1|DT630692 EST1155104 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIMEB88, mRNA sequence
Length = 689
Score = 36.2 bits (18), Expect = 0.40
Identities = 25/26 (96%), Gaps = 1/26 (3%)
Strand = Plus / Minus
Query: 139 aggtacctgcc-gggcggccgctcga 163
||||||||||| ||||||||||||||
Sbjct: 26 aggtacctgcccgggcggccgctcga 1
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,697
Number of Sequences: 355925
Number of extensions: 18697
Number of successful extensions: 5950
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 5919
Number of HSP's gapped (non-prelim): 47
length of query: 164
length of database: 217,277,237
effective HSP length: 18
effective length of query: 146
effective length of database: 210,870,587
effective search space: 30787105702
effective search space used: 30787105702
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)