BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH22b04.yg.2.1
(457 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV034050.1|CV034050 RTNACL1_38_G01.b1_A029 Roots plus ad... 96 1e-018
gb|CV034119.1|CV034119 RTNACL1_38_G01.g1_A029 Roots plus ad... 96 1e-018
gb|DR018819.1|DR018819 STRS1_25_H09.g1_A034 Shoot tip pitch... 96 1e-018
gb|DR689458.1|DR689458 EST1079544 Normalized pine embryo li... 90 9e-017
gb|DT635537.1|DT635537 EST1150468 Normalized pine embryo li... 90 9e-017
gb|DR060775.1|DR060775 RTNIT1_30_A04.b1_A029 Roots minus ni... 74 5e-012
gb|BX250464.1|BX250464 BX250464 Pinus pinaster differenciat... 64 5e-009
gb|DR683825.1|DR683825 EST1073901 Normalized pine embryo li... 56 1e-006
gb|DT631716.1|DT631716 EST1146647 Normalized pine embryo li... 56 1e-006
gb|DR117407.1|DR117407 RTMG1_6_F10.g1_A029 Roots minus magn... 46 0.001
gb|DR021827.1|DR021827 STRS1_47_D12.b1_A034 Shoot tip pitch... 38 0.30
gb|DR049559.1|DR049559 RTBOR1_17_B04.g1_A029 Roots plus add... 38 0.30
>gb|CV034050.1|CV034050 RTNACL1_38_G01.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_38_G01_A029 3', mRNA sequence
Length = 796
Score = 95.6 bits (48), Expect = 1e-018
Identities = 276/352 (78%)
Strand = Plus / Plus
Query: 8 gttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgcttc 67
|||| ||||| |||||||||||||| || | ||| | ||||||||||| ||| ||||
Sbjct: 244 gttattttgcaatgaaggttatggacaaagcatctctagcaagtcggaaaaagttgctaa 303
Query: 68 gagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccctgt 127
| ||||| || || | || ||||| ||||| |||| ||||| ||||| ||||| | |
Sbjct: 304 gggctcaaactgaaagagaaatcctacagtcattggatcatccttttcttccaacattat 363
Query: 128 atactcactttgagacagacaagttttcatgcttggttatggaattctgccctggagggg 187
|||| |||||||| ||||||||||||||||| || |||||||| || ||||||||||| |
Sbjct: 364 atacacactttgaaacagacaagttttcatgtttagttatggagttttgccctggaggag 423
Query: 188 atcttcacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaaagt 247
|||| ||||| ||||| ||| | ||||| || || | || || |||| |||||| ||
Sbjct: 424 atctgcacacacttcggcaacgacagccaggcaagcacttctctgagcttgcagcacggt 483
Query: 248 tctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatatacc 307
| |||| ||| ||||| || ||| | ||||| || ||||||||||| || || | |||
Sbjct: 484 tttatgcagcagaggttcttctttctttggagtatctgcatatgctcggagttgtgtaca 543
Query: 308 gtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgct 359
| ||||| ||||| || ||||| || || |||||||||| || ||||||||
Sbjct: 544 gagatctcaaacctgaaaatgttctagtaagggaagatggacatatcatgct 595
>gb|CV034119.1|CV034119 RTNACL1_38_G01.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_38_G01_A029 5', mRNA sequence
Length = 614
Score = 95.6 bits (48), Expect = 1e-018
Identities = 276/352 (78%)
Strand = Plus / Plus
Query: 8 gttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgcttc 67
|||| ||||| |||||||||||||| || | ||| | ||||||||||| ||| ||||
Sbjct: 262 gttattttgcaatgaaggttatggacaaagcatctctagcaagtcggaaaaagttgctaa 321
Query: 68 gagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccctgt 127
| ||||| || || | || ||||| ||||| |||| ||||| ||||| ||||| | |
Sbjct: 322 gggctcaaactgaaagagaaatcctacagtcattggatcatccttttcttccaacattat 381
Query: 128 atactcactttgagacagacaagttttcatgcttggttatggaattctgccctggagggg 187
|||| |||||||| ||||||||||||||||| || |||||||| || ||||||||||| |
Sbjct: 382 atacacactttgaaacagacaagttttcatgtttagttatggagttttgccctggaggag 441
Query: 188 atcttcacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaaagt 247
|||| ||||| ||||| ||| | ||||| || || | || || |||| |||||| ||
Sbjct: 442 atctgcacacacttcggcaacgacagccaggcaagcacttctctgagcttgcagcacggt 501
Query: 248 tctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatatacc 307
| |||| ||| ||||| || ||| | ||||| || ||||||||||| || || | |||
Sbjct: 502 tttatgcagcagaggttcttctttctttggagtatctgcatatgctcggagttgtgtaca 561
Query: 308 gtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgct 359
| ||||| ||||| || ||||| || || |||||||||| || ||||||||
Sbjct: 562 gagatctcaaacctgaaaatgttctagtaagggaagatggacatatcatgct 613
>gb|DR018819.1|DR018819 STRS1_25_H09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_25_H09_A034 5', mRNA sequence
Length = 801
Score = 95.6 bits (48), Expect = 1e-018
Identities = 276/352 (78%)
Strand = Plus / Plus
Query: 8 gttactttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgcttc 67
|||| ||||| |||||||||||||| || | ||| | ||||||||||| ||| ||||
Sbjct: 139 gttattttgcaatgaaggttatggacaaagcatctctagcaagtcggaaaaagttgctaa 198
Query: 68 gagctcagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccctgt 127
| ||||| || || | || ||||| ||||| |||| ||||| ||||| ||||| | |
Sbjct: 199 gggctcaaactgaaagagaaatcctacagtcattggatcatccttttcttccaacattat 258
Query: 128 atactcactttgagacagacaagttttcatgcttggttatggaattctgccctggagggg 187
|||| |||||||| ||||||||||||||||| || |||||||| || ||||||||||| |
Sbjct: 259 atacacactttgaaacagacaagttttcatgtttagttatggagttttgccctggaggag 318
Query: 188 atcttcacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaaagt 247
|||| ||||| ||||| ||| | ||||| || || | || || |||| |||||| ||
Sbjct: 319 atctgcacacacttcggcaacgacagccaggcaagcacttctctgagcttgcagcacggt 378
Query: 248 tctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatatacc 307
| |||| ||| ||||| || ||| | ||||| || ||||||||||| || || | |||
Sbjct: 379 tttatgcagcagaggttcttctttctttggagtatctgcatatgctcggagttgtgtaca 438
Query: 308 gtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgct 359
| ||||| ||||| || ||||| || || |||||||||| || ||||||||
Sbjct: 439 gagatctcaaacctgaaaatgttctagtaagggaagatggacatatcatgct 490
>gb|DR689458.1|DR689458 EST1079544 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACI92 3' end, mRNA sequence
Length = 760
Score = 89.7 bits (45), Expect = 9e-017
Identities = 222/281 (79%)
Strand = Plus / Plus
Query: 13 tttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgcttcgagct 72
||||| |||||||| |||||||| ||||||||||||||| || ||||| || |||||
Sbjct: 268 tttgcaatgaaggtgatggataaaggttctttggcaagtcgaaaaaagcttctgagagct 327
Query: 73 cagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccctgtatact 132
|| || || |||| || || || || ||||| ||||| ||||| ||||| | || ||
Sbjct: 328 caaactgaaagggaaattctacaatctctggatcatccttttcttccaacattatacacc 387
Query: 133 cactttgagacagacaagttttcatgcttggttatggaattctgccctggaggggatctt 192
|||||||||||||||||||| ||||| |||||||||| | || || ||||| |||||
Sbjct: 388 cactttgagacagacaagttctcatgtctggttatggagtattgtccaggaggagatcta 447
Query: 193 cacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaaagttctat 252
||||| ||||| ||| | || || ||||| | ||||| || ||||||| ||| |||
Sbjct: 448 cacacacttcgacaacgacaaccaggaaagcacttttctgaacaagcagttcggttttat 507
Query: 253 gtagctgaggtgctccttgcattggaatacctgcatatgct 293
||||| ||||| || || || ||||||||||| ||||||||
Sbjct: 508 gtagcagaggttcttctagctttggaatacctacatatgct 548
>gb|DT635537.1|DT635537 EST1150468 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGH89 3' end, mRNA sequence
Length = 768
Score = 89.7 bits (45), Expect = 9e-017
Identities = 222/281 (79%)
Strand = Plus / Plus
Query: 13 tttgccatgaaggttatggataagacttctttggcaagtcggaagaagctgcttcgagct 72
||||| |||||||| |||||||| ||||||||||||||| || ||||| || |||||
Sbjct: 276 tttgcaatgaaggtgatggataaaggttctttggcaagtcgaaaaaagcttctgagagct 335
Query: 73 cagaccgagcgggagatcctgcagtccctggaccatccatttctaccaaccctgtatact 132
|| || || |||| || || || || ||||| ||||| ||||| ||||| | || ||
Sbjct: 336 caaactgaaagggaaattctacaatctctggatcatccttttcttccaacattatacacc 395
Query: 133 cactttgagacagacaagttttcatgcttggttatggaattctgccctggaggggatctt 192
|||||||||||||||||||| ||||| |||||||||| | || || ||||| |||||
Sbjct: 396 cactttgagacagacaagttctcatgtctggttatggagtattgtccaggaggagatcta 455
Query: 193 cacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaaagttctat 252
||||| ||||| ||| | || || ||||| | ||||| || ||||||| ||| |||
Sbjct: 456 cacacacttcgacaacgacaaccaggaaagcacttttctgaacaagcagttcggttttat 515
Query: 253 gtagctgaggtgctccttgcattggaatacctgcatatgct 293
||||| ||||| || || || ||||||||||| ||||||||
Sbjct: 516 gtagcagaggttcttctagctttggaatacctacatatgct 556
>gb|DR060775.1|DR060775 RTNIT1_30_A04.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_30_A04_A029 3', mRNA sequence
Length = 785
Score = 73.8 bits (37), Expect = 5e-012
Identities = 184/233 (78%)
Strand = Plus / Minus
Query: 127 tatactcactttgagacagacaagttttcatgcttggttatggaattctgccctggaggg 186
||||| |||||||| ||||||||||||||||| || |||||||| || |||||||||||
Sbjct: 770 tatacacactttgaaacagacaagttttcatgtttagttatggagttttgccctggagga 711
Query: 187 gatcttcacactcttcgccaaaggcagcctggaaaatatttttcagagcaagcagcaaag 246
|| || ||||| ||||| ||| | ||||| || || | || || |||| |||||| |
Sbjct: 710 gagctgcacacacttcggcaacgacagccaggcaagcacttctctgagcttgcagcacgg 651
Query: 247 ttctatgtagctgaggtgctccttgcattggaatacctgcatatgcttgggattatatac 306
|| |||| ||| ||||| || ||| | ||||| || ||||||||||| || || | |||
Sbjct: 650 ttttatgcagcagaggttcttctttctttggagtatctgcatatgctcggagttgtgtac 591
Query: 307 cgtgatcttaaaccagagaatgtcctcgttcgggaagatggccacatcatgct 359
| ||||| ||||| || ||||| || || |||||||||| || ||||||||
Sbjct: 590 agagatctcaaacctgaaaatgttctagtaagggaagatggacatatcatgct 538
>gb|BX250464.1|BX250464 BX250464 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP037C06, mRNA sequence
Length = 620
Score = 63.9 bits (32), Expect = 5e-009
Identities = 194/248 (78%)
Strand = Plus / Plus
Query: 100 ctggaccatccatttctaccaaccctgtatactcactttgagacagacaagttttcatgc 159
||||| ||||||||||| || || | || ||||||||||| || |||||||| |||||
Sbjct: 187 ctggatcatccatttcttcccacattatacactcactttgaaactgacaagttctcatgt 246
Query: 160 ttggttatggaattctgccctggaggggatcttcacactcttcgccaaaggcagcctgga 219
|| |||||||| | ||||| ||||| ||||| |||| || || || ||||||| ||
Sbjct: 247 ttagttatggagtattgcccaggaggagatctccacatactccgacagcggcagccaggc 306
Query: 220 aaatatttttcagagcaagcagcaaagttctatgtagctgaggtgctccttgcattggaa 279
| | | || ||||| ||||||||| ||| |||| ||| ||||| || || || |||||
Sbjct: 307 agaaacttctcagaacaagcagcacggttttatgcagcagaggttcttctggctttggag 366
Query: 280 tacctgcatatgcttgggattatataccgtgatcttaaaccagagaatgtcctcgttcgg 339
|| || ||||||||||| ||| | ||| | || || |||||||| ||||| ||||| ||
Sbjct: 367 tatctacatatgcttggaattgtgtacagagacctcaaaccagaaaatgttctcgtgagg 426
Query: 340 gaagatgg 347
||||||||
Sbjct: 427 gaagatgg 434
>gb|DR683825.1|DR683825 EST1073901 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAL70 3' end, mRNA sequence
Length = 788
Score = 56.0 bits (28), Expect = 1e-006
Identities = 193/248 (77%)
Strand = Plus / Plus
Query: 100 ctggaccatccatttctaccaaccctgtatactcactttgagacagacaagttttcatgc 159
||||| ||||||||||| || || | || ||||||||||| || |||||||| |||||
Sbjct: 321 ctggatcatccatttcttcccacattatacactcactttgaaactgacaagttctcatgt 380
Query: 160 ttggttatggaattctgccctggaggggatcttcacactcttcgccaaaggcagcctgga 219
|| |||||||| | ||||| ||||| ||||| |||| || || || ||||||| ||
Sbjct: 381 ttagttatggagtattgcccaggaggagatctccacatactccgacagcggcagccaggc 440
Query: 220 aaatatttttcagagcaagcagcaaagttctatgtagctgaggtgctccttgcattggaa 279
| | | || ||||| ||||||||| ||| |||| || ||||| || || || |||||
Sbjct: 441 agaaacttctcagaacaagcagcacggttttatgcggcagaggttcttctggctttggag 500
Query: 280 tacctgcatatgcttgggattatataccgtgatcttaaaccagagaatgtcctcgttcgg 339
|| || ||||||||||| ||| | ||| | || || |||||||| ||||| ||||| ||
Sbjct: 501 tatctacatatgcttggaattgtgtacagagacctcaaaccagaaaatgttctcgtgagg 560
Query: 340 gaagatgg 347
||||||||
Sbjct: 561 gaagatgg 568
>gb|DT631716.1|DT631716 EST1146647 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFB84 3' end, mRNA sequence
Length = 792
Score = 56.0 bits (28), Expect = 1e-006
Identities = 193/248 (77%)
Strand = Plus / Plus
Query: 100 ctggaccatccatttctaccaaccctgtatactcactttgagacagacaagttttcatgc 159
||||| ||||||||||| || || | || ||||||||||| || |||||||| |||||
Sbjct: 329 ctggatcatccatttcttcccacattatacactcactttgaaactgacaagttctcatgt 388
Query: 160 ttggttatggaattctgccctggaggggatcttcacactcttcgccaaaggcagcctgga 219
|| |||||||| | ||||| ||||| ||||| |||| || || || ||||||| ||
Sbjct: 389 ttagttatggagtattgcccaggaggagatctccacatactccgacagcggcagccaggc 448
Query: 220 aaatatttttcagagcaagcagcaaagttctatgtagctgaggtgctccttgcattggaa 279
| | | || ||||| ||||||||| ||| |||| || ||||| || || || |||||
Sbjct: 449 agaaacttctcagaacaagcagcacggttttatgcggcagaggttcttctggctttggag 508
Query: 280 tacctgcatatgcttgggattatataccgtgatcttaaaccagagaatgtcctcgttcgg 339
|| || ||||||||||| ||| | ||| | || || |||||||| ||||| ||||| ||
Sbjct: 509 tatctacatatgcttggaattgtgtacagagacctcaaaccagaaaatgttctcgtgagg 568
Query: 340 gaagatgg 347
||||||||
Sbjct: 569 gaagatgg 576
>gb|DR117407.1|DR117407 RTMG1_6_F10.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_6_F10_A029 5', mRNA sequence
Length = 831
Score = 46.1 bits (23), Expect = 0.001
Identities = 95/119 (79%)
Strand = Plus / Plus
Query: 229 tcagagcaagcagcaaagttctatgtagctgaggtgctccttgcattggaatacctgcat 288
||||| ||||||||| ||| |||| ||| ||||| || || || ||||| || || |||
Sbjct: 57 tcagaacaagcagcacggttttatgcagcagaggttcttctggctttggagtatctacat 116
Query: 289 atgcttgggattatataccgtgatcttaaaccagagaatgtcctcgttcgggaagatgg 347
|||||||| ||| | ||| | || || |||||||| ||||| ||||| ||||||||||
Sbjct: 117 atgcttggaattgtgtacagagacctcaaaccagaaaatgttctcgtgagggaagatgg 175
>gb|DR021827.1|DR021827 STRS1_47_D12.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_47_D12_A034 3', mRNA sequence
Length = 894
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24 ggttatggataagacttct 42
|||||||||||||||||||
Sbjct: 768 ggttatggataagacttct 786
>gb|DR049559.1|DR049559 RTBOR1_17_B04.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_17_B04_A029 5', mRNA sequence
Length = 786
Score = 38.2 bits (19), Expect = 0.30
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 23 aggttatggataagacttc 41
|||||||||||||||||||
Sbjct: 215 aggttatggataagacttc 233
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 51,425
Number of Sequences: 355925
Number of extensions: 51425
Number of successful extensions: 13561
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13531
Number of HSP's gapped (non-prelim): 25
length of query: 457
length of database: 217,277,237
effective HSP length: 19
effective length of query: 438
effective length of database: 210,514,662
effective search space: 92205421956
effective search space used: 92205421956
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)