BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCH13e05.yg.2.1
         (577 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR017420.1|DR017420  STRS1_16_E04.b1_A034 Shoot tip pitch...    40   0.097
gb|DR017501.1|DR017501  STRS1_16_E04.g1_A034 Shoot tip pitch...    40   0.097
gb|DR096752.1|DR096752  STRR1_30_C11.b1_A033 Stem Response R...    40   0.097

>gb|DR017420.1|DR017420 STRS1_16_E04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
           cDNA clone STRS1_16_E04_A034 3', mRNA sequence
          Length = 740

 Score = 40.1 bits (20), Expect = 0.097
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 47  gcagacgaaacaaacttgaagata 70
           |||||||||||||| |||||||||
Sbjct: 219 gcagacgaaacaaatttgaagata 242



>gb|DR017501.1|DR017501 STRS1_16_E04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
           cDNA clone STRS1_16_E04_A034 5', mRNA sequence
          Length = 725

 Score = 40.1 bits (20), Expect = 0.097
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 47  gcagacgaaacaaacttgaagata 70
           |||||||||||||| |||||||||
Sbjct: 468 gcagacgaaacaaatttgaagata 491



>gb|DR096752.1|DR096752 STRR1_30_C11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
           STRR1_30_C11_A033 3', mRNA sequence
          Length = 707

 Score = 40.1 bits (20), Expect = 0.097
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 47  gcagacgaaacaaacttgaagata 70
           |||||||||||||| |||||||||
Sbjct: 553 gcagacgaaacaaatttgaagata 530



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 78,674
Number of Sequences: 355925
Number of extensions: 78674
Number of successful extensions: 24103
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24100
Number of HSP's gapped (non-prelim): 3
length of query: 577
length of database: 217,277,237
effective HSP length: 19
effective length of query: 558
effective length of database: 210,514,662
effective search space: 117467181396
effective search space used: 117467181396
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)