BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.068P22F020924.3.1
(714 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO165974.1|CO165974 FLD1_58_A08.g1_A029 Root flooded Pin... 50 1e-004
gb|DR091981.1|DR091981 RTAL1_25_F06.b1_A029 Roots plus adde... 50 1e-004
gb|CF471390.1|CF471390 RTDS1_3_B03.b1_A015 Drought-stressed... 46 0.002
gb|CR394251.1|CR394251 CR394251 RN Pinus pinaster cDNA clon... 46 0.002
gb|CR394310.1|CR394310 CR394310 RN Pinus pinaster cDNA clon... 46 0.002
gb|DR109740.1|DR109740 RTS1_4_G12.b1_A029 Roots minus sulfu... 46 0.002
gb|CO167344.1|CO167344 FLD1_68_H07.b1_A029 Root flooded Pin... 38 0.48
gb|DR011124.1|DR011124 HEAT1_3_D03.g1_A029 Root at 37 C for... 38 0.48
gb|DR052621.1|DR052621 RTCA1_5_F10.g1_A029 Roots minus calc... 38 0.48
gb|DR689123.1|DR689123 EST1079209 Normalized pine embryo li... 38 0.48
gb|DR691033.1|DR691033 EST1081119 Normalized pine embryo li... 38 0.48
gb|DT635127.1|DT635127 EST1150058 Normalized pine embryo li... 38 0.48
>gb|CO165974.1|CO165974 FLD1_58_A08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_58_A08_A029 5', mRNA sequence
Length = 830
Score = 50.1 bits (25), Expect = 1e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 305 gacaaacatggagatcaaaagacattgcgccgccttgctcaaaatcgtgaggctgcaagg 364
|||||| |||| ||||| |||||| | ||| | |||||||| ||||||||||| |||||
Sbjct: 256 gacaaaaatggggatcagaagacacttcgcaggcttgctcagaatcgtgaggcagcaaga 315
Query: 365 aagagccgactaaggaagaaggcatatgttcaacagttgga 405
|| || || | || || || ||||||||||||||| ||||
Sbjct: 316 aaaagtcgtttgagaaaaaaagcatatgttcaacagctgga 356
Score = 38.2 bits (19), Expect = 0.48
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 503 atgagtggaaatggggcatcggcctttgatatggagtatgcgaggtggttggaagagca 561
|||||||||||||| || || ||||||||||||||||| | |||||||| |||||
Sbjct: 463 atgagtggaaatggagccctagcgtttgatatggagtatgctcgttggttggatgagca 521
>gb|DR091981.1|DR091981 RTAL1_25_F06.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_25_F06_A029 3', mRNA sequence
Length = 615
Score = 50.1 bits (25), Expect = 1e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 305 gacaaacatggagatcaaaagacattgcgccgccttgctcaaaatcgtgaggctgcaagg 364
|||||| |||| ||||| |||||| | ||| | |||||||| ||||||||||| |||||
Sbjct: 148 gacaaaaatggggatcagaagacacttcgcaggcttgctcagaatcgtgaggcagcaaga 89
Query: 365 aagagccgactaaggaagaaggcatatgttcaacagttgga 405
|| || || | || || || ||||||||||||||| ||||
Sbjct: 88 aaaagtcgtttgagaaaaaaagcatatgttcaacagctgga 48
>gb|CF471390.1|CF471390 RTDS1_3_B03.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_3_B03_A015 3', mRNA sequence
Length = 663
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 338 cttgctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatatgttca 396
|||||||||||||| |||||||| |||| || || | |||||||||||||| |||||
Sbjct: 406 cttgctcaaaatcgagaggctgctcggaaaagtagattgaggaagaaggcatacgttca 348
>gb|CR394251.1|CR394251 CR394251 RN Pinus pinaster cDNA clone RN75G01, mRNA sequence
Length = 548
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 338 cttgctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatatgttca 396
|||||||||||||| |||||||| |||| || || | |||||||||||||| |||||
Sbjct: 261 cttgctcaaaatcgagaggctgctcggaaaagtagattgaggaagaaggcatacgttca 319
>gb|CR394310.1|CR394310 CR394310 RN Pinus pinaster cDNA clone RN76F04, mRNA sequence
Length = 630
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 338 cttgctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatatgttca 396
|||||||||||||| |||||||| |||| || || | |||||||||||||| |||||
Sbjct: 268 cttgctcaaaatcgagaggctgctcggaaaagtagattgaggaagaaggcatacgttca 326
>gb|DR109740.1|DR109740 RTS1_4_G12.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_4_G12_A029 3', mRNA sequence
Length = 755
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 338 cttgctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatatgttca 396
|||||||||||||| |||||||| |||| || || | |||||||||||||| |||||
Sbjct: 663 cttgctcaaaatcgagaggctgctcggaaaagtagattgaggaagaaggcatacgttca 605
>gb|CO167344.1|CO167344 FLD1_68_H07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_68_H07_A029 3', mRNA sequence
Length = 867
Score = 38.2 bits (19), Expect = 0.48
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 503 atgagtggaaatggggcatcggcctttgatatggagtatgcgaggtggttggaagagca 561
|||||||||||||| || || ||||||||||||||||| | |||||||| |||||
Sbjct: 771 atgagtggaaatggagccctagcgtttgatatggagtatgctcgttggttggatgagca 713
>gb|DR011124.1|DR011124 HEAT1_3_D03.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_3_D03_A029 5', mRNA sequence
Length = 705
Score = 38.2 bits (19), Expect = 0.48
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 527 tttgatatggagtatgcgaggtggttggaagagca 561
||||||||||||||||| | |||||||| |||||
Sbjct: 10 tttgatatggagtatgctcgttggttggatgagca 44
>gb|DR052621.1|DR052621 RTCA1_5_F10.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_5_F10_A029 5', mRNA sequence
Length = 844
Score = 38.2 bits (19), Expect = 0.48
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 466 catttttatatctagttcagttg 488
||||| |||||||||||||||||
Sbjct: 67 catttgtatatctagttcagttg 45
>gb|DR689123.1|DR689123 EST1079209 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACE46 3' end, mRNA sequence
Length = 708
Score = 38.2 bits (19), Expect = 0.48
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 503 atgagtggaaatggggcatcggcctttgatatggagtatgcgaggtggttggaagagca 561
|||||||||||||| || || ||||||||||||||||| | |||||||| |||||
Sbjct: 25 atgagtggaaatggagccctagcgtttgatatggagtatgctcgttggttggatgagca 83
>gb|DR691033.1|DR691033 EST1081119 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD328 3' end, mRNA sequence
Length = 536
Score = 38.2 bits (19), Expect = 0.48
Identities = 50/59 (84%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 305 gacaaacatggagatcaaaagacattgcgccgccttgctcaaaatcgtgaggctgcaag 363
|||||| |||| ||||| |||||| | ||| || ||||||| ||||||||||| |||||
Sbjct: 464 gacaaaaatggggatcagaagacacttcgcagc-ttgctcagaatcgtgaggcagcaag 521
>gb|DT635127.1|DT635127 EST1150058 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGD46 3' end, mRNA sequence
Length = 824
Score = 38.2 bits (19), Expect = 0.48
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 503 atgagtggaaatggggcatcggcctttgatatggagtatgcgaggtggttggaagagca 561
|||||||||||||| || || ||||||||||||||||| | |||||||| |||||
Sbjct: 173 atgagtggaaatggagccctagcgtttgatatggagtatgctcgttggttggatgagca 231
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 87,421
Number of Sequences: 355925
Number of extensions: 87421
Number of successful extensions: 20658
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20630
Number of HSP's gapped (non-prelim): 23
length of query: 714
length of database: 217,277,237
effective HSP length: 19
effective length of query: 695
effective length of database: 210,514,662
effective search space: 146307690090
effective search space used: 146307690090
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)