BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBTB.064G21F020918.3.1
         (705 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BF220584.1|BF220584  NXCI_149_B01_F NXCI (Nsf Xylem Compr...    40   0.12 
gb|DT628770.1|DT628770  EST1155340 Subtracted pine embryo li...    40   0.12 

>gb|BF220584.1|BF220584 NXCI_149_B01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
           taeda cDNA clone NXCI_149_B01 5' similar to Arabidopsis
           thaliana sequence At2g35530 bZIP transcription factor
           AtbZip16 see http://mips.gsf.de/proj/thal/db/index.html,
           mRNA sequence
          Length = 397

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 664 tgatgcctccttatgggacaccaccaccatat 695
           ||||||| ||||||||||| |||| |||||||
Sbjct: 168 tgatgccaccttatgggactccactaccatat 199



>gb|DT628770.1|DT628770 EST1155340 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
           clone PIMD180 5' end, mRNA sequence
          Length = 906

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 664 tgatgcctccttatgggacaccaccaccatat 695
           ||||||| ||||||||||| |||| |||||||
Sbjct: 472 tgatgccaccttatgggactccactaccatat 503



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 102,874
Number of Sequences: 355925
Number of extensions: 102874
Number of successful extensions: 24908
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24904
Number of HSP's gapped (non-prelim): 4
length of query: 705
length of database: 217,277,237
effective HSP length: 19
effective length of query: 686
effective length of database: 210,514,662
effective search space: 144413058132
effective search space used: 144413058132
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)