BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.060L08F020610.3.1
(677 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI397974.1|BI397974 NXPV_112_H04_F NXPV (Nsf Xylem Plani... 100 1e-019
gb|CO366432.1|CO366432 RTK1_27_G06.g1_A029 Roots minus pota... 76 2e-012
gb|AA556565.1|AA556565 420 Loblolly pine C Pinus taeda cDNA... 50 1e-004
gb|DR167393.1|DR167393 RTPHOS1_18_B12.g1_A029 Roots minus p... 46 0.002
>gb|BI397974.1|BI397974 NXPV_112_H04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_112_H04 5' similar to Arabidopsis
thaliana sequence At3g10740 putative
alpha-L-arabinofuranosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 332
Score = 99.6 bits (50), Expect = 1e-019
Identities = 87/101 (86%)
Strand = Plus / Plus
Query: 199 tttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaac 258
||||||| |||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 tttttcgnnnagataaatcatgctggagctggtgggttgtgggcagagcttgtaagcaat 166
Query: 259 agaggatttgaggctggtgggcctaatacaccttcgaatat 299
|| | |||||| ||||| || ||||| ||||| || |||||
Sbjct: 167 agngnatttgaagctgggggccctaacacaccatcaaatat 207
>gb|CO366432.1|CO366432 RTK1_27_G06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_G06_A029 5', mRNA sequence
Length = 812
Score = 75.8 bits (38), Expect = 2e-012
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 199 tttttcgaggagatcaaccatgctggagctggtgggttgtgggcag 244
|||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 767 tttttcgaggagataaatcatgctggagctggtgggttgtgggcag 812
>gb|AA556565.1|AA556565 420 Loblolly pine C Pinus taeda cDNA clone 3C8F, mRNA sequence
Length = 475
Score = 50.1 bits (25), Expect = 1e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 221 ctggagctggtgggttgtgggcaga 245
|||||||||||||||||||||||||
Sbjct: 388 ctggagctggtgggttgtgggcaga 412
>gb|DR167393.1|DR167393 RTPHOS1_18_B12.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_18_B12_A029 5', mRNA sequence
Length = 785
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 442 gttggggtctataatcctggctactggggcatgaacattgaaaaggg 488
||||| || ||||||||||| |||||||| ||||| |||||| ||||
Sbjct: 97 gttggagtttataatcctggttactggggaatgaatattgaagaggg 143
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 73,910
Number of Sequences: 355925
Number of extensions: 73910
Number of successful extensions: 20253
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20248
Number of HSP's gapped (non-prelim): 5
length of query: 677
length of database: 217,277,237
effective HSP length: 19
effective length of query: 658
effective length of database: 210,514,662
effective search space: 138518647596
effective search space used: 138518647596
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)