BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS9a01.xg.2.1
(480 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ634727.1|BQ634727 NXRV072_E09_F NXRV (Nsf Xylem Root w... 107 4e-022
gb|DR050898.1|DR050898 RTBOR1_26_H05.b1_A029 Roots plus add... 107 4e-022
gb|BQ290999.1|BQ290999 NXRV054_D07_F NXRV (Nsf Xylem Root w... 92 2e-017
gb|CO172303.1|CO172303 NDL1_28_G10.g1_A029 Needles control ... 58 3e-007
gb|DR071883.1|DR071883 RTDK1_22_E02.g1_A029 Roots, dark Pin... 58 3e-007
gb|DR694707.1|DR694707 EST1084799 Normalized pine embryo li... 58 3e-007
gb|DT638995.1|DT638995 EST1153926 Normalized pine embryo li... 58 3e-007
gb|AY356371.1| Pinus taeda R2R3-MYB transcription factor (M... 58 3e-007
gb|AY356372.1| Pinus taeda R2R3-MYB transcription factor (M... 58 3e-007
gb|CF390133.1|CF390133 RTDR2_12_C07.g1_A021 Loblolly pine r... 56 1e-006
gb|BX784172.1|BX784172 BX784172 Pinus pinaster differenciat... 50 8e-005
gb|BE241255.1|BE241255 NXNV_183_D12_F Nsf Xylem Normal wood... 46 0.001
gb|BQ697390.1|BQ697390 NXPV_053_G01_F NXPV (Nsf Xylem Plani... 44 0.005
gb|CF671302.1|CF671302 RTCNT1_56_D10.b1_A029 Root control P... 36 1.3
gb|DR078653.1|DR078653 RTFEPL1_6_B12.b1_A029 Roots plus add... 36 1.3
gb|DR090168.1|DR090168 RTAL1_13_D06.b1_A029 Roots plus adde... 36 1.3
gb|DR685654.1|DR685654 EST1075731 Normalized pine embryo li... 36 1.3
gb|DR694473.1|DR694473 EST1084565 Normalized pine embryo li... 36 1.3
gb|DT638742.1|DT638742 EST1153673 Normalized pine embryo li... 36 1.3
gb|AW010091.1|AW010091 PC01E11 Pine TriplEx pollen cone lib... 34 4.9
gb|AW010235.1|AW010235 ST03F07 Pine TriplEx shoot tip libra... 34 4.9
gb|AW010880.1|AW010880 ST12E06 Pine TriplEx shoot tip libra... 34 4.9
gb|AW010958.1|AW010958 ST15A03 Pine TriplEx shoot tip libra... 34 4.9
gb|AW011236.1|AW011236 ST18D04 Pine TriplEx shoot tip libra... 34 4.9
gb|AW011370.1|AW011370 ST20A02 Pine TriplEx shoot tip libra... 34 4.9
gb|AW011534.1|AW011534 ST22A01 Pine TriplEx shoot tip libra... 34 4.9
gb|AW042636.1|AW042636 ST24B12 Pine TriplEx shoot tip libra... 34 4.9
gb|AW043288.1|AW043288 ST31E10 Pine TriplEx shoot tip libra... 34 4.9
gb|AW056550.1|AW056550 ST51E04 Pine TriplEx shoot tip libra... 34 4.9
gb|AW056565.1|AW056565 ST51F08 Pine TriplEx shoot tip libra... 34 4.9
gb|AW056423.1|AW056423 ST51G01 Pine TriplEx shoot tip libra... 34 4.9
gb|AW056944.1|AW056944 ST58C04 Pine TriplEx shoot tip libra... 34 4.9
gb|AW056956.1|AW056956 ST58D06 Pine TriplEx shoot tip libra... 34 4.9
gb|AW064980.1|AW064980 ST38B09 Pine TriplEx shoot tip libra... 34 4.9
gb|AW225732.1|AW225732 ST71B09 Pine TriplEx shoot tip libra... 34 4.9
gb|AW225804.1|AW225804 ST72A01 Pine TriplEx shoot tip libra... 34 4.9
gb|AW225821.1|AW225821 ST72B07 Pine TriplEx shoot tip libra... 34 4.9
gb|AW226410.1|AW226410 ST82A06 Pine TriplEx shoot tip libra... 34 4.9
gb|AW437916.1|AW437916 ST78B12 Pine TriplEx shoot tip libra... 34 4.9
gb|AW438019.1|AW438019 ST83E12 Pine TriplEx shoot tip libra... 34 4.9
gb|AW587612.1|AW587612 ST60E06 Pine TriplEx shoot tip libra... 34 4.9
gb|AW697610.1|AW697610 ST61A06 Pine TriplEx shoot tip libra... 34 4.9
gb|AW754589.1|AW754589 PC04A08 Pine TriplEx pollen cone lib... 34 4.9
gb|AW981678.1|AW981678 PC15D08 Pine TriplEx pollen cone lib... 34 4.9
gb|BE662363.1|BE662363 ST62/ST62B08 Pine TriplEx shoot tip ... 34 4.9
gb|BE662343.1|BE662343 ST62/ST62B11 Pine TriplEx shoot tip ... 34 4.9
gb|BE662654.1|BE662654 ST90/St90G09 Pine TriplEx shoot tip ... 34 4.9
gb|BX250403.1|BX250403 BX250403 Pinus pinaster differenciat... 34 4.9
gb|BX251535.1|BX251535 BX251535 Pinus pinaster differenciat... 34 4.9
gb|BX253328.1|BX253328 BX253328 Pinus pinaster differenciat... 34 4.9
gb|BX254524.1|BX254524 BX254524 Pinus pinaster differenciat... 34 4.9
gb|BX254826.1|BX254826 BX254826 Pinus pinaster differenciat... 34 4.9
gb|BX254847.1|BX254847 BX254847 Pinus pinaster differenciat... 34 4.9
gb|BE049764.1|BE049764 NXNV_143_G04_F Nsf Xylem Normal wood... 34 4.9
gb|BE241242.1|BE241242 NXNV_183_B12_F Nsf Xylem Normal wood... 34 4.9
gb|BE520012.1|BE520012 NXCI_028_B03_F NXCI (Nsf Xylem Compr... 34 4.9
gb|BE582497.1|BE582497 NXCI_029_B02_F NXCI (Nsf Xylem Compr... 34 4.9
gb|BE997215.1|BE997215 NXCI_107_H05_F NXCI (Nsf Xylem Compr... 34 4.9
gb|BF778293.1|BF778293 NXSI_080_E04_F NXSI (Nsf Xylem Side ... 34 4.9
gb|BG040469.1|BG040469 NXSI_108_E11_F NXSI (Nsf Xylem Side ... 34 4.9
gb|BG275649.1|BG275649 NXSI_144_C10_F NXSI (Nsf Xylem Side ... 34 4.9
gb|BM133588.1|BM133588 NXLV_009_C07_F NXLV (Nsf Xylem Late ... 34 4.9
gb|BM158604.1|BM158604 NXLV_036_G09_F NXLV (Nsf Xylem Late ... 34 4.9
gb|BM492722.1|BM492722 NXRV_030_C07_F NXRV (Nsf Xylem Root ... 34 4.9
gb|BM493255.1|BM493255 NXLV_060_D07_F NXLV (Nsf Xylem Late ... 34 4.9
gb|BM493272.1|BM493272 NXLV_062_A06_F NXLV (Nsf Xylem Late ... 34 4.9
gb|BM493275.1|BM493275 NXLV_062_B04_F NXLV (Nsf Xylem Late ... 34 4.9
gb|BM493862.1|BM493862 NXLV_070_G04_F NXLV (Nsf Xylem Late ... 34 4.9
gb|BQ700821.1|BQ700821 NXRV111_G09_F NXRV (Nsf Xylem Root w... 34 4.9
gb|CD017017.1|CD017017 NXCI_061_B05_F NXCI (Nsf Xylem Compr... 34 4.9
gb|CD024506.1|CD024506 NXRV_043_H03_F NXRV (Nsf Xylem Root ... 34 4.9
gb|CD025033.1|CD025033 NXSI_005_A10_F NXSI (Nsf Xylem Side ... 34 4.9
gb|CD026093.1|CD026093 NXSI_096_H09_F NXSI (Nsf Xylem Side ... 34 4.9
gb|CF398359.1|CF398359 RTDS3_12_B06.b1_A022 Drought-stresse... 34 4.9
gb|BX677779.1|BX677779 BX677779 RN Pinus pinaster cDNA clon... 34 4.9
gb|BX678842.1|BX678842 BX678842 RS Pinus pinaster cDNA clon... 34 4.9
gb|BX682401.1|BX682401 BX682401 Pinus pinaster differenciat... 34 4.9
gb|BX682950.1|BX682950 BX682950 Pinus pinaster differenciat... 34 4.9
gb|CR393664.1|CR393664 CR393664 RN Pinus pinaster cDNA clon... 34 4.9
gb|CR394298.1|CR394298 CR394298 RN Pinus pinaster cDNA clon... 34 4.9
gb|CO411772.1|CO411772 EST842157 Sequencing ESTs from loblo... 34 4.9
gb|CO412760.1|CO412760 EST843145 Sequencing ESTs from loblo... 34 4.9
gb|DN628807.1|DN628807 EST979623 Subtracted pine embryo lib... 34 4.9
gb|DN629430.1|DN629430 EST980246 Subtracted pine embryo lib... 34 4.9
gb|DR092093.1|DR092093 RTAL1_26_F07.b1_A029 Roots plus adde... 34 4.9
gb|DR386716.1|DR386716 RTHG1_17_B06.b1_A029 Roots plus adde... 34 4.9
gb|DR386798.1|DR386798 RTHG1_17_B06.g1_A029 Roots plus adde... 34 4.9
gb|DR684456.1|DR684456 EST1074533 Normalized pine embryo li... 34 4.9
gb|DR690028.1|DR690028 EST1080114 Normalized pine embryo li... 34 4.9
gb|DR745943.1|DR745943 RTCU1_33_D06.g1_A029 Roots plus adde... 34 4.9
gb|DT625872.1|DT625872 EST1157796 Sequencing ESTs from lobl... 34 4.9
gb|DT625931.1|DT625931 EST1157855 Sequencing ESTs from lobl... 34 4.9
gb|DT635793.1|DT635793 EST1150724 Normalized pine embryo li... 34 4.9
>gb|BQ634727.1|BQ634727 NXRV072_E09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV072_E09 5' similar to Arabidopsis thaliana
sequence At1g09540 putative transcription factor (MYB61)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 742
Score = 107 bits (54), Expect = 4e-022
Identities = 91/104 (87%)
Strand = Plus / Plus
Query: 52 gtcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgag 111
|||||||||||||||||||||||||| ||| | || ||||| || || |||||||| |||
Sbjct: 575 gtcctcgggaacaggtggtctcaaatagcaacacacctgcccggaagnactgataacgag 634
Query: 112 atcaagaatctatggaactcgtgcatcaagaagaagctgaggca 155
|||||||| || |||||||||||||| || |||||||| |||||
Sbjct: 635 atcaagaacctctggaactcgtgcattaaaaagaagctnaggca 678
>gb|DR050898.1|DR050898 RTBOR1_26_H05.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_26_H05_A029 3', mRNA sequence
Length = 793
Score = 107 bits (54), Expect = 4e-022
Identities = 111/130 (85%)
Strand = Plus / Minus
Query: 52 gtcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgag 111
|||||||||||||||||||||||||| ||| | || ||||| || || |||||||| |||
Sbjct: 450 gtcctcgggaacaggtggtctcaaatagcaacacatctgcccggaagaactgataacgag 391
Query: 112 atcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatccc 171
|||||||| || |||||||||||||| || |||||||| ||||| |||||| |||||
Sbjct: 390 atcaagaacctctggaactcgtgcattaaaaagaagcttaggcaacgaggcatagatcct 331
Query: 172 aacacccaca 181
||||| ||||
Sbjct: 330 aacacgcaca 321
>gb|BQ290999.1|BQ290999 NXRV054_D07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV054_D07 5' similar to Arabidopsis thaliana
sequence At1g09540 putative transcription factor (MYB61)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 764
Score = 91.7 bits (46), Expect = 2e-017
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 52 gtcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgag 111
|||||||||||||||||||||||||| ||| | || ||||| || || |||||||| |||
Sbjct: 569 gtcctcgggaacaggtggtctcaaatagcaacacacctgcccggaagaactgataacgag 628
Query: 112 atcaagaatctatggaactcgtgcat 137
|||||||| || ||||||||||||||
Sbjct: 629 atcaagaacctctggaactcgtgcat 654
>gb|CO172303.1|CO172303 NDL1_28_G10.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_28_G10_A029 5', mRNA sequence
Length = 751
Score = 58.0 bits (29), Expect = 3e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 58 gggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaag 117
||||| |||||||| | ||| || ||||| |||||||||| |||||||| |||||||||
Sbjct: 152 gggaataggtggtcacgaatcgctgcgcaattgccagggagaactgataacgagatcaag 211
Query: 118 aatctatggaactcgtgcatcaagaagaa 146
||| |||||| || | |||||||||||
Sbjct: 212 aattactggaacacgaggatcaagaagaa 240
>gb|DR071883.1|DR071883 RTDK1_22_E02.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_22_E02_A029 5', mRNA sequence
Length = 708
Score = 58.0 bits (29), Expect = 3e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 58 gggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaag 117
||||| |||||||| | ||| || ||||| |||||||||| |||||||| |||||||||
Sbjct: 427 gggaataggtggtcacgaatcgctgcgcaattgccagggagaactgataacgagatcaag 486
Query: 118 aatctatggaactcgtgcatcaagaagaa 146
||| |||||| || | |||||||||||
Sbjct: 487 aattactggaacacgaggatcaagaagaa 515
>gb|DR694707.1|DR694707 EST1084799 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEF89 3' end, mRNA sequence
Length = 790
Score = 58.0 bits (29), Expect = 3e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 58 gggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaag 117
||||| |||||||| | ||| || ||||| |||||||||| |||||||| |||||||||
Sbjct: 194 gggaataggtggtcacgaatcgctgcgcaattgccagggagaactgataacgagatcaag 253
Query: 118 aatctatggaactcgtgcatcaagaagaa 146
||| |||||| || | |||||||||||
Sbjct: 254 aattactggaacacgaggatcaagaagaa 282
>gb|DT638995.1|DT638995 EST1153926 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHL85 3' end, mRNA sequence
Length = 812
Score = 58.0 bits (29), Expect = 3e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 58 gggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaag 117
||||| |||||||| | ||| || ||||| |||||||||| |||||||| |||||||||
Sbjct: 202 gggaataggtggtcacgaatcgctgcgcaattgccagggagaactgataacgagatcaag 261
Query: 118 aatctatggaactcgtgcatcaagaagaa 146
||| |||||| || | |||||||||||
Sbjct: 262 aattactggaacacgaggatcaagaagaa 290
>gb|AY356371.1| Pinus taeda R2R3-MYB transcription factor (MYB4) mRNA, complete cds
Length = 945
Score = 58.0 bits (29), Expect = 3e-007
Identities = 77/93 (82%)
Strand = Plus / Plus
Query: 55 ctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatc 114
||||| |||||||||||||| |||||||| | | |||| || | || || || ||||||
Sbjct: 268 ctcggcaacaggtggtctcagattgcagcccggttgcccggacgtacggacaacgagatc 327
Query: 115 aagaatctatggaactcgtgcatcaagaagaag 147
|||||| | |||||||| ||||| |||||||||
Sbjct: 328 aagaatttctggaactcctgcataaagaagaag 360
>gb|AY356372.1| Pinus taeda R2R3-MYB transcription factor (MYB1) mRNA, complete cds
Length = 1023
Score = 58.0 bits (29), Expect = 3e-007
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 58 gggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaag 117
||||| |||||||| | ||| || ||||| |||||||||| |||||||| |||||||||
Sbjct: 256 gggaataggtggtcacgaatcgctgcgcaattgccagggagaactgataacgagatcaag 315
Query: 118 aatctatggaactcgtgcatcaagaagaa 146
||| |||||| || | |||||||||||
Sbjct: 316 aattactggaacacgaggatcaagaagaa 344
>gb|CF390133.1|CF390133 RTDR2_12_C07.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_12_C07_A021 5', mRNA
sequence
Length = 712
Score = 56.0 bits (28), Expect = 1e-006
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||| | ||| || ||||| |||||||||| |||||||| ||||||||||||
Sbjct: 537 caggtggtcacgaatcgctgcgcaattgccagggagaactgataacgagatcaagaatta 596
Query: 123 atggaactcgtgcatcaagaagaa 146
|||||| || | |||||||||||
Sbjct: 597 ctggaacacgaggatcaagaagaa 620
>gb|BX784172.1|BX784172 BX784172 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 130B11, mRNA sequence
Length = 685
Score = 50.1 bits (25), Expect = 8e-005
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 55 ctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatc 114
||||| |||||||||||||| |||||||| | |||| || | || || || ||||||
Sbjct: 314 ctcggcaacaggtggtctcagattgcagcccgtttgcccggacgtacggacaacgagatc 373
Query: 115 aagaatctatggaactcgtgcatcaagaagaag 147
|||||| | |||||||| ||||| |||||||||
Sbjct: 374 aagaatttctggaactcctgcataaagaagaag 406
>gb|BE241255.1|BE241255 NXNV_183_D12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_183_D12 5' similar to Arabidopsis thaliana
sequence At5g12870 putative transcription factor (MYB46)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 419
Score = 46.1 bits (23), Expect = 0.001
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 109 gagatcaagaatctatggaactcgtgcatcaagaagaag 147
|||||||||||| | |||||||| ||||| |||||||||
Sbjct: 104 gagatcaagaatttctggaactcctgcataaagaagaag 142
>gb|BQ697390.1|BQ697390 NXPV_053_G01_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_053_G01 5' similar to Arabidopsis
thaliana sequence At1g09540 putative transcription
factor (MYB61) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 207
Score = 44.1 bits (22), Expect = 0.005
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 124 tggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccaca 181
|||||||||||||| || |||||||| ||||| |||||| ||||| ||||| ||||
Sbjct: 2 tggaactcgtgcattaaaaagaagcttaggcaacgaggcatagatcctaacacgcaca 59
>gb|CF671302.1|CF671302 RTCNT1_56_D10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_56_D10_A029 3', mRNA sequence
Length = 672
Score = 36.2 bits (18), Expect = 1.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatc 39
||||||||||||||||||
Sbjct: 563 gaagaagacctcatcatc 580
Score = 36.2 bits (18), Expect = 1.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatc 39
||||||||||||||||||
Sbjct: 141 gaagaagacctcatcatc 158
>gb|DR078653.1|DR078653 RTFEPL1_6_B12.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_6_B12_A029 3', mRNA sequence
Length = 782
Score = 36.2 bits (18), Expect = 1.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatc 39
||||||||||||||||||
Sbjct: 444 gaagaagacctcatcatc 461
>gb|DR090168.1|DR090168 RTAL1_13_D06.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_13_D06_A029 3', mRNA sequence
Length = 703
Score = 36.2 bits (18), Expect = 1.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatc 39
||||||||||||||||||
Sbjct: 276 gaagaagacctcatcatc 293
>gb|DR685654.1|DR685654 EST1075731 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB633 3' end, mRNA sequence
Length = 786
Score = 36.2 bits (18), Expect = 1.3
Identities = 54/66 (81%)
Strand = Plus / Plus
Query: 55 ctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatc 114
||||| |||||||||||| | ||||| || || |||| || |||| |||||||| |||
Sbjct: 280 ctcggtaacaggtggtctaagattgccgcacacttgcctggacggacagataatgaaatc 339
Query: 115 aagaat 120
||||||
Sbjct: 340 aagaat 345
>gb|DR694473.1|DR694473 EST1084565 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEC94 3' end, mRNA sequence
Length = 822
Score = 36.2 bits (18), Expect = 1.3
Identities = 54/66 (81%)
Strand = Plus / Plus
Query: 55 ctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatc 114
||||| |||||||||||| | ||||| || || |||| || |||| |||||||| |||
Sbjct: 333 ctcggtaacaggtggtctaagattgccgcacacttgcctggacggacagataatgaaatc 392
Query: 115 aagaat 120
||||||
Sbjct: 393 aagaat 398
>gb|DT638742.1|DT638742 EST1153673 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHI92 3' end, mRNA sequence
Length = 822
Score = 36.2 bits (18), Expect = 1.3
Identities = 54/66 (81%)
Strand = Plus / Plus
Query: 55 ctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatc 114
||||| |||||||||||| | ||||| || || |||| || |||| |||||||| |||
Sbjct: 341 ctcggtaacaggtggtctaagattgccgcacacttgcctggacggacagataatgaaatc 400
Query: 115 aagaat 120
||||||
Sbjct: 401 aagaat 406
>gb|AW010091.1|AW010091 PC01E11 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC01E11, mRNA sequence
Length = 489
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 94 gcatcaagaagaagctg 110
>gb|AW010235.1|AW010235 ST03F07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST03F07, mRNA sequence
Length = 807
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 278 ctctggggaacttgagc 294
|||||||||||||||||
Sbjct: 346 ctctggggaacttgagc 330
>gb|AW010880.1|AW010880 ST12E06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST12E06, mRNA sequence
Length = 487
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 99 gcatcaagaagaagctg 115
>gb|AW010958.1|AW010958 ST15A03 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST15A03, mRNA sequence
Length = 538
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 98 gcatcaagaagaagctg 114
>gb|AW011236.1|AW011236 ST18D04 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST18D04, mRNA sequence
Length = 521
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 119 gcatcaagaagaagctg 135
>gb|AW011370.1|AW011370 ST20A02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST20A02, mRNA sequence
Length = 483
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 104 gcatcaagaagaagctg 120
>gb|AW011534.1|AW011534 ST22A01 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST22A01, mRNA sequence
Length = 441
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 89 gcatcaagaagaagctg 105
>gb|AW042636.1|AW042636 ST24B12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST24B12, mRNA sequence
Length = 520
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 98 gcatcaagaagaagctg 114
>gb|AW043288.1|AW043288 ST31E10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST31E10, mRNA sequence
Length = 520
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 97 gcatcaagaagaagctg 113
>gb|AW056550.1|AW056550 ST51E04 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST51E04, mRNA sequence
Length = 281
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 92 gcatcaagaagaagctg 108
>gb|AW056565.1|AW056565 ST51F08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST51F08, mRNA sequence
Length = 409
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 92 gcatcaagaagaagctg 108
>gb|AW056423.1|AW056423 ST51G01 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST51G01, mRNA sequence
Length = 404
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 92 gcatcaagaagaagctg 108
>gb|AW056944.1|AW056944 ST58C04 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST58C04, mRNA sequence
Length = 390
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 92 gcatcaagaagaagctg 108
>gb|AW056956.1|AW056956 ST58D06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST58D06, mRNA sequence
Length = 446
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 92 gcatcaagaagaagctg 108
>gb|AW064980.1|AW064980 ST38B09 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST38B09, mRNA sequence
Length = 525
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 92 gcatcaagaagaagctg 108
>gb|AW225732.1|AW225732 ST71B09 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST71B09, mRNA sequence
Length = 305
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 92 gcatcaagaagaagctg 108
>gb|AW225804.1|AW225804 ST72A01 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST72A01, mRNA sequence
Length = 368
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 92 gcatcaagaagaagctg 108
>gb|AW225821.1|AW225821 ST72B07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST72B07, mRNA sequence
Length = 409
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 92 gcatcaagaagaagctg 108
>gb|AW226410.1|AW226410 ST82A06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST82A06, mRNA sequence
Length = 403
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 92 gcatcaagaagaagctg 108
>gb|AW437916.1|AW437916 ST78B12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST78B12, mRNA sequence
Length = 333
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 92 gcatcaagaagaagctg 108
>gb|AW438019.1|AW438019 ST83E12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST83E12, mRNA sequence
Length = 445
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 92 gcatcaagaagaagctg 108
>gb|AW587612.1|AW587612 ST60E06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST60E06, mRNA sequence
Length = 423
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 92 gcatcaagaagaagctg 108
>gb|AW697610.1|AW697610 ST61A06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST61A06, mRNA sequence
Length = 367
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 95 gcatcaagaagaagctg 111
>gb|AW754589.1|AW754589 PC04A08 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC04A08, mRNA sequence
Length = 485
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 92 gcatcaagaagaagctg 108
>gb|AW981678.1|AW981678 PC15D08 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC15D08, mRNA sequence
Length = 511
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 89 gcatcaagaagaagctg 105
>gb|BE662363.1|BE662363 ST62/ST62B08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST62/ST62B08, mRNA sequence
Length = 371
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 79 gcatcaagaagaagctg 95
>gb|BE662343.1|BE662343 ST62/ST62B11 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST62/ST62B11, mRNA sequence
Length = 340
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 92 gcatcaagaagaagctg 108
>gb|BE662654.1|BE662654 ST90/St90G09 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST90/St90G09, mRNA sequence
Length = 485
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 173 gcatcaagaagaagctg 189
>gb|BX250403.1|BX250403 BX250403 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP036E03 similar to 60S RIBOSOMAL PROTEIN
L39, mRNA sequence
Length = 638
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 106 gcatcaagaagaagctg 122
>gb|BX251535.1|BX251535 BX251535 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP050H05 similar to 60S RIBOSOMAL PROTEIN
L39, mRNA sequence
Length = 609
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 69 gcatcaagaagaagctg 85
>gb|BX253328.1|BX253328 BX253328 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP081D05 similar to 60S RIBOSOMAL PROTEIN
L39, mRNA sequence
Length = 653
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 136 gcatcaagaagaagctg 152
>gb|BX254524.1|BX254524 BX254524 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP099F10 similar to 60S RIBOSOMAL PROTEIN
L39, mRNA sequence
Length = 551
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 74 gcatcaagaagaagctg 90
>gb|BX254826.1|BX254826 BX254826 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP105D10 similar to 60S RIBOSOMAL PROTEIN
L39, mRNA sequence
Length = 547
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 66 gcatcaagaagaagctg 82
>gb|BX254847.1|BX254847 BX254847 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP105H01 similar to 60S RIBOSOMAL PROTEIN
L39, mRNA sequence
Length = 512
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 70 gcatcaagaagaagctg 86
>gb|BE049764.1|BE049764 NXNV_143_G04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_143_G04 5' similar to Arabidopsis thaliana
sequence At2g25210 60S ribosomal protein L39 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 384
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 52 gcatcaagaagaagctg 68
>gb|BE241242.1|BE241242 NXNV_183_B12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_183_B12 5' similar to Arabidopsis thaliana
sequence At2g25210 60S ribosomal protein L39 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 504
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 77 gcatcaagaagaagctg 93
>gb|BE520012.1|BE520012 NXCI_028_B03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_028_B03 5' similar to Arabidopsis
thaliana sequence At5g52600 MYB82 (gb|AAF14064.1) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 328
Score = 34.2 bits (17), Expect = 4.9
Identities = 26/29 (89%)
Strand = Plus / Plus
Query: 91 ccagggaggactgataatgagatcaagaa 119
||||| || ||||||||||| ||||||||
Sbjct: 228 ccaggtagaactgataatgaaatcaagaa 256
>gb|BE582497.1|BE582497 NXCI_029_B02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_029_B02 5' similar to Arabidopsis
thaliana sequence At2g25210 60S ribosomal protein L39
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 265
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 132 gcatcaagaagaagctg 148
>gb|BE997215.1|BE997215 NXCI_107_H05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_107_H05 5' similar to Arabidopsis
thaliana sequence At2g25210 60S ribosomal protein L39
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 397
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 76 gcatcaagaagaagctg 92
>gb|BF778293.1|BF778293 NXSI_080_E04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_080_E04 5' similar to Arabidopsis thaliana
sequence At2g25210 60S ribosomal protein L39 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 291
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 52 gcatcaagaagaagctg 68
>gb|BG040469.1|BG040469 NXSI_108_E11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_108_E11 5' similar to Arabidopsis thaliana
sequence At2g25210 60S ribosomal protein L39 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 453
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 66 gcatcaagaagaagctg 82
>gb|BG275649.1|BG275649 NXSI_144_C10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_144_C10 5' similar to Arabidopsis thaliana
sequence At2g25210 60S ribosomal protein L39 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 379
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 53 gcatcaagaagaagctg 69
>gb|BM133588.1|BM133588 NXLV_009_C07_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_009_C07 5' similar to Arabidopsis thaliana
sequence At2g25210 60S ribosomal protein L39 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 449
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 109 gcatcaagaagaagctg 125
>gb|BM158604.1|BM158604 NXLV_036_G09_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_036_G09 5' similar to Arabidopsis thaliana
sequence At2g25210 60S ribosomal protein L39 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 292
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 109 gcatcaagaagaagctg 125
>gb|BM492722.1|BM492722 NXRV_030_C07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_030_C07 5' similar to Arabidopsis thaliana
sequence At2g25210 60S ribosomal protein L39 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 509
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 82 gcatcaagaagaagctg 98
>gb|BM493255.1|BM493255 NXLV_060_D07_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_060_D07 5' similar to Arabidopsis thaliana
sequence At2g25210 60S ribosomal protein L39 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 250
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 109 gcatcaagaagaagctg 125
>gb|BM493272.1|BM493272 NXLV_062_A06_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_062_A06 5' similar to Arabidopsis thaliana
sequence At2g25210 60S ribosomal protein L39 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 316
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 109 gcatcaagaagaagctg 125
>gb|BM493275.1|BM493275 NXLV_062_B04_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_062_B04 5' similar to Arabidopsis thaliana
sequence At2g25210 60S ribosomal protein L39 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 309
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 109 gcatcaagaagaagctg 125
>gb|BM493862.1|BM493862 NXLV_070_G04_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_070_G04 5' similar to Arabidopsis thaliana
sequence At2g25210 60S ribosomal protein L39 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 607
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 109 gcatcaagaagaagctg 125
>gb|BQ700821.1|BQ700821 NXRV111_G09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV111_G09 5' similar to Arabidopsis thaliana
sequence At2g25210 60S ribosomal protein L39 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 372
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 78 gcatcaagaagaagctg 94
>gb|CD017017.1|CD017017 NXCI_061_B05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_061_B05 5' similar to Arabidopsis
thaliana sequence At2g25210 60S ribosomal protein L39
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 166
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 66 gcatcaagaagaagctg 82
>gb|CD024506.1|CD024506 NXRV_043_H03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_043_H03 5' similar to Arabidopsis thaliana
sequence At2g25210 60S ribosomal protein L39 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 198
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 86 gcatcaagaagaagctg 102
>gb|CD025033.1|CD025033 NXSI_005_A10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_005_A10 5' similar to Arabidopsis thaliana
sequence At2g25210 60S ribosomal protein L39 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 184
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 84 gcatcaagaagaagctg 100
>gb|CD026093.1|CD026093 NXSI_096_H09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_096_H09 5' similar to Arabidopsis thaliana
sequence At2g25210 60S ribosomal protein L39 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 148
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 66 gcatcaagaagaagctg 82
>gb|CF398359.1|CF398359 RTDS3_12_B06.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_12_B06_A022 3', mRNA sequence
Length = 526
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 106 gcatcaagaagaagctg 122
>gb|BX677779.1|BX677779 BX677779 RN Pinus pinaster cDNA clone RN44F04, mRNA sequence
Length = 501
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 58 gcatcaagaagaagctg 74
>gb|BX678842.1|BX678842 BX678842 RS Pinus pinaster cDNA clone RS15G12, mRNA sequence
Length = 445
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 55 gcatcaagaagaagctg 71
>gb|BX682401.1|BX682401 BX682401 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 116B01 similar to 60S ribosomal protein L39,
mRNA sequence
Length = 379
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 84 gcatcaagaagaagctg 100
>gb|BX682950.1|BX682950 BX682950 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 123H09 similar to 60S ribosomal protein L39,
mRNA sequence
Length = 537
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 81 gcatcaagaagaagctg 97
>gb|CR393664.1|CR393664 CR393664 RN Pinus pinaster cDNA clone RN63B08, mRNA sequence
Length = 475
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 55 gcatcaagaagaagctg 71
>gb|CR394298.1|CR394298 CR394298 RN Pinus pinaster cDNA clone RN76D12, mRNA sequence
Length = 200
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 49 gcatcaagaagaagctg 65
>gb|CO411772.1|CO411772 EST842157 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIALO73 5' end, mRNA sequence
Length = 396
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 82 gcatcaagaagaagctg 98
>gb|CO412760.1|CO412760 EST843145 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAM161 5' end, mRNA sequence
Length = 396
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 82 gcatcaagaagaagctg 98
>gb|DN628807.1|DN628807 EST979623 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAB491, mRNA sequence
Length = 528
Score = 34.2 bits (17), Expect = 4.9
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 253 gacatcaacccatcaagcactggtc 277
||||||||||| |||||| ||||||
Sbjct: 521 gacatcaacccttcaagctctggtc 497
>gb|DN629430.1|DN629430 EST980246 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTABE65, mRNA sequence
Length = 558
Score = 34.2 bits (17), Expect = 4.9
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 253 gacatcaacccatcaagcactggtc 277
||||||||||| |||||| ||||||
Sbjct: 38 gacatcaacccttcaagctctggtc 62
>gb|DR092093.1|DR092093 RTAL1_26_F07.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_26_F07_A029 3', mRNA sequence
Length = 565
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 137 gcatcaagaagaagctg 153
>gb|DR386716.1|DR386716 RTHG1_17_B06.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_17_B06_A029 3', mRNA sequence
Length = 639
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 85 gcatcaagaagaagctg 101
>gb|DR386798.1|DR386798 RTHG1_17_B06.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_17_B06_A029 5', mRNA sequence
Length = 492
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 47 gcatcaagaagaagctg 63
>gb|DR684456.1|DR684456 EST1074533 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAS88 3' end, mRNA sequence
Length = 709
Score = 34.2 bits (17), Expect = 4.9
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 253 gacatcaacccatcaagcactggtc 277
||||||||||| |||||| ||||||
Sbjct: 1 gacatcaacccttcaagctctggtc 25
>gb|DR690028.1|DR690028 EST1080114 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACQ27 3' end, mRNA sequence
Length = 778
Score = 34.2 bits (17), Expect = 4.9
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 135 catcaagaagaagctgaggca 155
||||||||||||||| |||||
Sbjct: 317 catcaagaagaagctaaggca 337
>gb|DR745943.1|DR745943 RTCU1_33_D06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_33_D06_A029 5', mRNA sequence
Length = 522
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 44 gcatcaagaagaagctg 60
>gb|DT625872.1|DT625872 EST1157796 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA461 5' end, mRNA sequence
Length = 320
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 6 gcatcaagaagaagctg 22
>gb|DT625931.1|DT625931 EST1157855 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA527 5' end, mRNA sequence
Length = 358
Score = 34.2 bits (17), Expect = 4.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gcatcaagaagaagctg 150
|||||||||||||||||
Sbjct: 44 gcatcaagaagaagctg 60
>gb|DT635793.1|DT635793 EST1150724 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGK66 3' end, mRNA sequence
Length = 752
Score = 34.2 bits (17), Expect = 4.9
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 135 catcaagaagaagctgaggca 155
||||||||||||||| |||||
Sbjct: 324 catcaagaagaagctaaggca 344
Database: Pinus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:25 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 57,642
Number of Sequences: 355925
Number of extensions: 57642
Number of successful extensions: 16291
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16185
Number of HSP's gapped (non-prelim): 105
length of query: 480
length of database: 217,277,237
effective HSP length: 19
effective length of query: 461
effective length of database: 210,514,662
effective search space: 97047259182
effective search space used: 97047259182
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)