BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBS5e09.xg.2.1
         (723 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO165223.1|CO165223  FLD1_53_D08.b1_A029 Root flooded Pin...    52   3e-005
gb|CF392294.1|CF392294  RTDR3_7_D10.b1_A022 Loblolly pine ro...    44   0.008
gb|DR112917.1|DR112917  RTS1_31_C10.g1_A029 Roots minus sulf...    44   0.008
gb|CO176572.1|CO176572  NDL1_62_G03.g1_A029 Needles control ...    40   0.12 
gb|CX649739.1|CX649739  COLD1_41_E05.b1_A029 Root cold Pinus...    40   0.12 
gb|DR024455.1|DR024455  STRS1_65_C08.b1_A034 Shoot tip pitch...    40   0.12 
gb|DR385279.1|DR385279  RTHG1_7_E09.g1_A029 Roots plus added...    40   0.12 

>gb|CO165223.1|CO165223 FLD1_53_D08.b1_A029 Root flooded Pinus taeda cDNA clone
           FLD1_53_D08_A029 3', mRNA sequence
          Length = 833

 Score = 52.0 bits (26), Expect = 3e-005
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 516 cggatggaactcnacgctggagagtatct 544
           |||||||||||| ||||||||||||||||
Sbjct: 443 cggatggaactctacgctggagagtatct 471



>gb|CF392294.1|CF392294 RTDR3_7_D10.b1_A022 Loblolly pine roots recovering from drought DR3
           Pinus taeda cDNA clone RTDR3_7_D10_A022 3', mRNA
           sequence
          Length = 609

 Score = 44.1 bits (22), Expect = 0.008
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 517 ggatggaactcnacgctggagagtatctatgagggggtgcctatg 561
           ||||||||||| ||||||||||| |||| ||  || |||||||||
Sbjct: 246 ggatggaactctacgctggagagcatctgtgctggtgtgcctatg 290



>gb|DR112917.1|DR112917 RTS1_31_C10.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
           RTS1_31_C10_A029 5', mRNA sequence
          Length = 622

 Score = 44.1 bits (22), Expect = 0.008
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 520 tggaactcnacgctggagagtatct 544
           |||||||| ||||||||||||||||
Sbjct: 471 tggaactcaacgctggagagtatct 495



>gb|CO176572.1|CO176572 NDL1_62_G03.g1_A029 Needles control Pinus taeda cDNA clone
           NDL1_62_G03_A029 5', mRNA sequence
          Length = 785

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 517 ggatggaactcnacgctggagag 539
           ||||||||||| |||||||||||
Sbjct: 239 ggatggaactctacgctggagag 261



>gb|CX649739.1|CX649739 COLD1_41_E05.b1_A029 Root cold Pinus taeda cDNA clone
           COLD1_41_E05_A029 3', mRNA sequence
          Length = 748

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 70  aacacgtttgaggatctcga 89
           ||||||||||||||||||||
Sbjct: 480 aacacgtttgaggatctcga 461



>gb|DR024455.1|DR024455 STRS1_65_C08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
           cDNA clone STRS1_65_C08_A034 3', mRNA sequence
          Length = 825

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 517 ggatggaactcnacgctggagag 539
           ||||||||||| |||||||||||
Sbjct: 196 ggatggaactctacgctggagag 174



>gb|DR385279.1|DR385279 RTHG1_7_E09.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
           RTHG1_7_E09_A029 5', mRNA sequence
          Length = 791

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 70  aacacgtttgaggatctcga 89
           ||||||||||||||||||||
Sbjct: 271 aacacgtttgaggatctcga 290



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 41,788
Number of Sequences: 355925
Number of extensions: 41788
Number of successful extensions: 11737
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11728
Number of HSP's gapped (non-prelim): 9
length of query: 723
length of database: 217,277,237
effective HSP length: 19
effective length of query: 704
effective length of database: 210,514,662
effective search space: 148202322048
effective search space used: 148202322048
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)