BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBF12h04.xg.3.2
         (747 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BF517341.1|BF517341  NXSI_013_C12_F NXSI (Nsf Xylem Side ...    38   0.50 
gb|BF609558.1|BF609558  NXSI_046_B10_F NXSI (Nsf Xylem Side ...    38   0.50 
gb|BF779076.1|BF779076  NXSI_094_E07_F NXSI (Nsf Xylem Side ...    38   0.50 
gb|BQ701927.1|BQ701927  NXSI_122_C06_F NXSI (Nsf Xylem Side ...    38   0.50 

>gb|BF517341.1|BF517341 NXSI_013_C12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
           clone NXSI_013_C12 5', mRNA sequence
          Length = 287

 Score = 38.2 bits (19), Expect = 0.50
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 565 aatatatatacgatgaaat 583
           |||||||||||||||||||
Sbjct: 95  aatatatatacgatgaaat 77



>gb|BF609558.1|BF609558 NXSI_046_B10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
           clone NXSI_046_B10 5', mRNA sequence
          Length = 326

 Score = 38.2 bits (19), Expect = 0.50
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 565 aatatatatacgatgaaat 583
           |||||||||||||||||||
Sbjct: 95  aatatatatacgatgaaat 77



>gb|BF779076.1|BF779076 NXSI_094_E07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
           clone NXSI_094_E07 5', mRNA sequence
          Length = 490

 Score = 38.2 bits (19), Expect = 0.50
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 565 aatatatatacgatgaaat 583
           |||||||||||||||||||
Sbjct: 95  aatatatatacgatgaaat 77



>gb|BQ701927.1|BQ701927 NXSI_122_C06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
           clone NXSI_122_C06 5', mRNA sequence
          Length = 425

 Score = 38.2 bits (19), Expect = 0.50
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 565 aatatatatacgatgaaat 583
           |||||||||||||||||||
Sbjct: 95  aatatatatacgatgaaat 77



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 67,295
Number of Sequences: 355925
Number of extensions: 67295
Number of successful extensions: 15212
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15208
Number of HSP's gapped (non-prelim): 4
length of query: 747
length of database: 217,277,237
effective HSP length: 19
effective length of query: 728
effective length of database: 210,514,662
effective search space: 153254673936
effective search space used: 153254673936
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)