BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAR1e04.yg.2.1
(405 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX679752.1|BX679752 BX679752 RS Pinus pinaster cDNA clon... 56 1e-006
gb|DR102424.1|DR102424 STRR1_81_B02.b1_A033 Stem Response R... 56 1e-006
gb|AW289657.1|AW289657 NXNV003D03F Nsf Xylem Normal wood Ve... 52 2e-005
gb|AW888208.1|AW888208 NXNV_105_F07_F Nsf Xylem Normal wood... 52 2e-005
gb|BF517037.1|BF517037 NXSI_008_D10_F NXSI (Nsf Xylem Side ... 52 2e-005
gb|BF610385.1|BF610385 NXSI_049_H12_F NXSI (Nsf Xylem Side ... 52 2e-005
gb|BG275920.1|BG275920 NXSI_149_E10_F NXSI (Nsf Xylem Side ... 52 2e-005
gb|CD028198.1|CD028198 NXNV003D03 Nsf Xylem Normal wood Ver... 52 2e-005
gb|CD028514.1|CD028514 NXSI_119_H02_F NXSI (Nsf Xylem Side ... 52 2e-005
gb|CF473651.1|CF473651 RTWW2_4_G02.b1_A021 Well-watered lob... 52 2e-005
gb|CF473790.1|CF473790 RTWW2_4_G02.g1_A021 Well-watered lob... 52 2e-005
gb|BX682255.2|BX682255 BX682255 Pinus pinaster differenciat... 52 2e-005
gb|CX646584.1|CX646584 COLD1_10_F02.b1_A029 Root cold Pinus... 52 2e-005
gb|AH013933.1|SEG_AY645907S Pinus taeda laccase-like multic... 50 7e-005
gb|AY645909.1|AY645907S3 Pinus taeda laccase-like multicopp... 50 7e-005
gb|DR019426.1|DR019426 STRS1_30_A03.b1_A034 Shoot tip pitch... 48 3e-004
gb|AA739915.1|AA739915 680 PtIFG2 Pinus taeda cDNA clone 91... 46 0.001
gb|AI725182.1|AI725182 1081 PtIFG2 Pinus taeda cDNA clone 9... 46 0.001
gb|AW289555.1|AW289555 NXNV002H11F Nsf Xylem Normal wood Ve... 46 0.001
gb|AW290117.1|AW290117 NXNV010D09F Nsf Xylem Normal wood Ve... 46 0.001
gb|BX250000.1|BX250000 BX250000 Pinus pinaster differenciat... 46 0.001
gb|AW626664.1|AW626664 NXNV068B04 Nsf Xylem Normal wood Ver... 46 0.001
gb|BF516721.1|BF516721 NXSI_002_E10_F NXSI (Nsf Xylem Side ... 46 0.001
gb|BF777637.1|BF777637 NXSI_070_G12_F NXSI (Nsf Xylem Side ... 46 0.001
gb|BG275785.1|BG275785 NXSI_145_H01_F NXSI (Nsf Xylem Side ... 46 0.001
gb|BM428608.1|BM428608 NXRV_019_C04_F NXRV (Nsf Xylem Root ... 46 0.001
gb|BQ633762.1|BQ633762 NXRV060_D11_F NXRV (Nsf Xylem Root w... 46 0.001
gb|BQ699385.1|BQ699385 NXRV127_B08_F NXRV (Nsf Xylem Root w... 46 0.001
gb|BQ700010.1|BQ700010 NXRV133_A09_F NXRV (Nsf Xylem Root w... 46 0.001
gb|BQ702308.1|BQ702308 NXSI_127_C02_F NXSI (Nsf Xylem Side ... 46 0.001
gb|CD026741.1|CD026741 NXNV010D09 Nsf Xylem Normal wood Ver... 46 0.001
gb|CD028178.1|CD028178 NXNV002H11 Nsf Xylem Normal wood Ver... 46 0.001
gb|CO366300.1|CO366300 RTK1_27_B12.b1_A029 Roots minus pota... 46 0.001
gb|CX647335.1|CX647335 COLD1_15_H08.b1_A029 Root cold Pinus... 46 0.001
gb|DR023255.1|DR023255 STRS1_56_A07.g1_A034 Shoot tip pitch... 46 0.001
gb|DR060986.1|DR060986 RTNIT1_31_G11.b1_A029 Roots minus ni... 46 0.001
gb|DR079949.1|DR079949 RTFEPL1_19_A07.b1_A029 Roots plus ad... 46 0.001
gb|DR080004.1|DR080004 RTFEPL1_19_A07.g1_A029 Roots plus ad... 46 0.001
gb|DR099105.1|DR099105 STRR1_53_D12.b1_A033 Stem Response R... 46 0.001
gb|DR100018.1|DR100018 STRR1_61_B02.b1_A033 Stem Response R... 46 0.001
gb|DR116909.1|DR116909 RTMG1_3_C03.g1_A029 Roots minus magn... 46 0.001
gb|DR178837.1|DR178837 RTMNUT1_14_G02.b1_A029 Roots minus m... 46 0.001
gb|DR178921.1|DR178921 RTMNUT1_14_G02.g1_A029 Roots minus m... 46 0.001
gb|AF132120.1|AF132120 Pinus taeda laccase (Lac2) mRNA, com... 46 0.001
dbj|BD224536.1| Materials and methods for the modification ... 46 0.001
gb|BX250739.1|BX250739 BX250739 Pinus pinaster differenciat... 44 0.004
gb|BE187465.1|BE187465 NXNV_98_F01_F Nsf Xylem Normal wood ... 44 0.004
gb|BF518342.1|BF518342 NXSI_038_C03_F NXSI (Nsf Xylem Side ... 44 0.004
gb|BQ107883.1|BQ107883 NXLV101_H12_F NXLV (Nsf Xylem Late w... 44 0.004
gb|DR166052.1|DR166052 RTPHOS1_9_B07.b2_A029 Roots minus ph... 44 0.004
gb|AF132122.1|AF132122 Pinus taeda laccase (Lac4) mRNA, com... 44 0.004
gb|CF478305.1|CF478305 RTWW3_18_E06.b1_A022 Well-watered lo... 42 0.017
gb|AH013942.1|SEG_AY645937S Pinus taeda laccase-like multic... 42 0.017
gb|AY645939.1|AY645937S3 Pinus taeda laccase-like multicopp... 42 0.017
gb|AI812465.1|AI812465 11D4 Pine Lambda Zap Xylem library P... 38 0.27
gb|AI813240.1|AI813240 3F5 Pine Lambda Zap Xylem library Pi... 38 0.27
gb|BX249680.1|BX249680 BX249680 Pinus pinaster differenciat... 38 0.27
gb|AW626589.1|AW626589 NXNV067B05 Nsf Xylem Normal wood Ver... 38 0.27
gb|BF610261.1|BF610261 NXSI_057_B03_F NXSI (Nsf Xylem Side ... 38 0.27
gb|BQ702500.1|BQ702500 NXSI_129_D01_F NXSI (Nsf Xylem Side ... 38 0.27
gb|BQ702927.1|BQ702927 NXSI_134_C10_F NXSI (Nsf Xylem Side ... 38 0.27
gb|CF398272.1|CF398272 RTDS3_24_F12.g1_A022 Drought-stresse... 38 0.27
gb|CF474140.1|CF474140 RTWW2_17_D03.b1_A021 Well-watered lo... 38 0.27
dbj|BD224537.1| Materials and methods for the modification ... 38 0.27
>gb|BX679752.1|BX679752 BX679752 RS Pinus pinaster cDNA clone RS32H11, mRNA sequence
Length = 355
Score = 56.0 bits (28), Expect = 1e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggt 222
|||||||||||||||||||||||||| || ||||||
Sbjct: 72 atgcactgccacctggacgtgcacataacgtggggt 107
>gb|DR102424.1|DR102424 STRR1_81_B02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_81_B02_A033 3', mRNA sequence
Length = 799
Score = 56.0 bits (28), Expect = 1e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 187 atgcactgccacctggacgtgcacatcacctggggt 222
|||||||||||||||||||||||||| || ||||||
Sbjct: 142 atgcactgccacctggacgtgcacataacgtggggt 107
>gb|AW289657.1|AW289657 NXNV003D03F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV003D03 5', mRNA sequence
Length = 503
Score = 52.0 bits (26), Expect = 2e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatgg 232
|||||||||||| ||||||||||||| || ||||| || |||||||
Sbjct: 209 atgcactgccacttggacgtgcacataacatgggggctggccatgg 254
>gb|AW888208.1|AW888208 NXNV_105_F07_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_105_F07 5' similar to Arabidopsis thaliana
sequence At5g07130 laccase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 506
Score = 52.0 bits (26), Expect = 2e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatgg 232
|||||||||||| ||||||||||||| || |||||| | |||||||
Sbjct: 5 atgcactgccacttggacgtgcacataacatggggtttggccatgg 50
>gb|BF517037.1|BF517037 NXSI_008_D10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_008_D10 5' similar to Arabidopsis thaliana
sequence At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 495
Score = 52.0 bits (26), Expect = 2e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatgg 232
|||||||||||| ||||||||||||| || ||||| || |||||||
Sbjct: 106 atgcactgccacttggacgtgcacataacatgggggctggccatgg 151
>gb|BF610385.1|BF610385 NXSI_049_H12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_049_H12 5' similar to Arabidopsis thaliana
sequence At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 267
Score = 52.0 bits (26), Expect = 2e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatgg 232
|||||||||||| ||||||||||||| || ||||| || |||||||
Sbjct: 106 atgcactgccacttggacgtgcacataacatgggggctggccatgg 151
>gb|BG275920.1|BG275920 NXSI_149_E10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_149_E10 5' similar to Arabidopsis thaliana
sequence At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 395
Score = 52.0 bits (26), Expect = 2e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatgg 232
|||||||||||| ||||||||||||| || ||||| || |||||||
Sbjct: 121 atgcactgccacttggacgtgcacataacatgggggctggccatgg 166
>gb|CD028198.1|CD028198 NXNV003D03 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV003D03 5' similar to Arabidopsis thaliana sequence
At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 503
Score = 52.0 bits (26), Expect = 2e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatgg 232
|||||||||||| ||||||||||||| || ||||| || |||||||
Sbjct: 209 atgcactgccacttggacgtgcacataacatgggggctggccatgg 254
>gb|CD028514.1|CD028514 NXSI_119_H02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_119_H02 5' similar to Arabidopsis thaliana
sequence At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 561
Score = 52.0 bits (26), Expect = 2e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatgg 232
|||||||||||| ||||||||||||| || ||||| || |||||||
Sbjct: 268 atgcactgccacttggacgtgcacataacatgggggctggccatgg 313
>gb|CF473651.1|CF473651 RTWW2_4_G02.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_4_G02_A021 3', mRNA sequence
Length = 497
Score = 52.0 bits (26), Expect = 2e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatgg 232
|||||||||||| ||||||||||||| || |||||| | |||||||
Sbjct: 12 atgcactgccacttggacgtgcacataacttggggtttggccatgg 57
>gb|CF473790.1|CF473790 RTWW2_4_G02.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_4_G02_A021 5', mRNA sequence
Length = 659
Score = 52.0 bits (26), Expect = 2e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatgg 232
|||||||||||| ||||||||||||| || |||||| | |||||||
Sbjct: 551 atgcactgccacttggacgtgcacataacttggggtttggccatgg 596
>gb|BX682255.2|BX682255 BX682255 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 114B08 similar to Ubiquitin, mRNA sequence
Length = 541
Score = 52.0 bits (26), Expect = 2e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatgg 232
|||||||||||| ||||||||||||| || ||||| || |||||||
Sbjct: 253 atgcactgccacttggacgtgcacataacatgggggctggccatgg 298
>gb|CX646584.1|CX646584 COLD1_10_F02.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_10_F02_A029 3', mRNA sequence
Length = 837
Score = 52.0 bits (26), Expect = 2e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatgg 232
|||||||||||| ||||||||||||| || ||||| || |||||||
Sbjct: 383 atgcactgccacttggacgtgcacataacatgggggctggccatgg 338
>gb|AH013933.1|SEG_AY645907S Pinus taeda laccase-like multicopper oxidase 90 gene, exons 3 through
5 and partial cds
Length = 1131
Score = 50.1 bits (25), Expect = 7e-005
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 3 ccaccccatccacctccacggctacgacttctacatc 39
|||||| ||||| |||||||||||||| |||||||||
Sbjct: 1095 ccaccctatccatctccacggctacgatttctacatc 1131
>gb|AY645909.1|AY645907S3 Pinus taeda laccase-like multicopper oxidase 90 gene, exon 5 and
partial cds
Length = 812
Score = 50.1 bits (25), Expect = 7e-005
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 3 ccaccccatccacctccacggctacgacttctacatc 39
|||||| ||||| |||||||||||||| |||||||||
Sbjct: 776 ccaccctatccatctccacggctacgatttctacatc 812
>gb|DR019426.1|DR019426 STRS1_30_A03.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_30_A03_A034 3', mRNA sequence
Length = 835
Score = 48.1 bits (24), Expect = 3e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 187 atgcactgccacctggacgtgcac 210
||||||||||||||||||||||||
Sbjct: 24 atgcactgccacctggacgtgcac 1
>gb|AA739915.1|AA739915 680 PtIFG2 Pinus taeda cDNA clone 9102M 3', mRNA sequence
Length = 449
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| ||||||||||||| || |||||
Sbjct: 27 atgcactgccacttggacgtgcacataacatgggg 61
>gb|AI725182.1|AI725182 1081 PtIFG2 Pinus taeda cDNA clone 9102r, mRNA sequence
Length = 541
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| ||||||||||||| || |||||
Sbjct: 114 atgcactgccacttggacgtgcacataacatgggg 148
>gb|AW289555.1|AW289555 NXNV002H11F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV002H11 5', mRNA sequence
Length = 442
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| ||||||||||||| || |||||
Sbjct: 159 atgcactgccacttggacgtgcacataacatgggg 193
>gb|AW290117.1|AW290117 NXNV010D09F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV010D09 5', mRNA sequence
Length = 500
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| ||||||||||||| || |||||
Sbjct: 275 atgcactgccacttggacgtgcacataacatgggg 309
>gb|BX250000.1|BX250000 BX250000 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP031C02 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 721
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| ||||||||||||| || |||||
Sbjct: 512 atgcactgccacttggacgtgcacataacatgggg 546
>gb|AW626664.1|AW626664 NXNV068B04 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV068B04 5' similar to Arabidopsis thaliana sequence
At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 256
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| ||||||||||||| || |||||
Sbjct: 162 atgcactgccacttggacgtgcacataacatgggg 196
>gb|BF516721.1|BF516721 NXSI_002_E10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_002_E10 5' similar to Arabidopsis thaliana
sequence At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 376
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| ||||||||||||| || |||||
Sbjct: 217 atgcactgccacttggacgtgcacataacatgggg 251
>gb|BF777637.1|BF777637 NXSI_070_G12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_070_G12 5' similar to Arabidopsis thaliana
sequence At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 312
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| ||||||||||||| || |||||
Sbjct: 176 atgcactgccacttggacgtgcacataacatgggg 210
>gb|BG275785.1|BG275785 NXSI_145_H01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_145_H01 5' similar to Arabidopsis thaliana
sequence At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 388
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| ||||||||||||| || |||||
Sbjct: 103 atgcactgccacttggacgtgcacataacatgggg 137
>gb|BM428608.1|BM428608 NXRV_019_C04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_019_C04 5' similar to Arabidopsis thaliana
sequence At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 202
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| ||||||||||||| || |||||
Sbjct: 101 atgcactgccacttggacgtgcacataacatgggg 135
>gb|BQ633762.1|BQ633762 NXRV060_D11_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV060_D11 5' similar to Arabidopsis thaliana
sequence At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 798
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| ||||||||||||| || |||||
Sbjct: 101 atgcactgccacttggacgtgcacataacatgggg 135
>gb|BQ699385.1|BQ699385 NXRV127_B08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV127_B08 5' similar to Arabidopsis thaliana
sequence At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 444
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| ||||||||||||| || |||||
Sbjct: 138 atgcactgccacttggacgtgcacataacatgggg 172
>gb|BQ700010.1|BQ700010 NXRV133_A09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV133_A09 5' similar to Arabidopsis thaliana
sequence At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 765
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| ||||||||||||| || |||||
Sbjct: 482 atgcactgccacttggacgtgcacataacatgggg 516
>gb|BQ702308.1|BQ702308 NXSI_127_C02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_127_C02 5' similar to Arabidopsis thaliana
sequence At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 557
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| ||||||||||||| || |||||
Sbjct: 281 atgcactgccacttggacgtgcacataacatgggg 315
>gb|CD026741.1|CD026741 NXNV010D09 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV010D09 5' similar to Arabidopsis thaliana sequence
At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 500
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| ||||||||||||| || |||||
Sbjct: 275 atgcactgccacttggacgtgcacataacatgggg 309
>gb|CD028178.1|CD028178 NXNV002H11 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV002H11 5' similar to Arabidopsis thaliana sequence
At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 442
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| ||||||||||||| || |||||
Sbjct: 159 atgcactgccacttggacgtgcacataacatgggg 193
>gb|CO366300.1|CO366300 RTK1_27_B12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_B12_A029 3', mRNA sequence
Length = 803
Score = 46.1 bits (23), Expect = 0.001
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggc 233
||||| ||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 461 atgcattgccatctggacgtgcatatcacatgggggctggccatggc 507
>gb|CX647335.1|CX647335 COLD1_15_H08.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_15_H08_A029 3', mRNA sequence
Length = 620
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| ||||||||||||| || |||||
Sbjct: 335 atgcactgccacttggacgtgcacataacatgggg 369
>gb|DR023255.1|DR023255 STRS1_56_A07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_56_A07_A034 5', mRNA sequence
Length = 774
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| |||||||||| || ||||||||
Sbjct: 612 atgcactgccacttggacgtgcatataacctgggg 646
>gb|DR060986.1|DR060986 RTNIT1_31_G11.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_31_G11_A029 3', mRNA sequence
Length = 842
Score = 46.1 bits (23), Expect = 0.001
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggc 233
||||| ||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 507 atgcattgccatctggacgtgcatatcacatgggggctggccatggc 553
>gb|DR079949.1|DR079949 RTFEPL1_19_A07.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_19_A07_A029 3', mRNA sequence
Length = 648
Score = 46.1 bits (23), Expect = 0.001
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggc 233
||||| ||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 304 atgcattgccatctggacgtgcatatcacatgggggctggccatggc 350
>gb|DR080004.1|DR080004 RTFEPL1_19_A07.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_19_A07_A029 5', mRNA sequence
Length = 346
Score = 46.1 bits (23), Expect = 0.001
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggc 233
||||| ||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 240 atgcattgccatctggacgtgcatatcacatgggggctggccatggc 286
>gb|DR099105.1|DR099105 STRR1_53_D12.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_53_D12_A033 3', mRNA sequence
Length = 793
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| |||||||||| || ||||||||
Sbjct: 437 atgcactgccacttggacgtgcatataacctgggg 471
>gb|DR100018.1|DR100018 STRR1_61_B02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_61_B02_A033 3', mRNA sequence
Length = 860
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| |||||||||| || ||||||||
Sbjct: 491 atgcactgccacttggacgtgcatataacctgggg 525
>gb|DR116909.1|DR116909 RTMG1_3_C03.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_3_C03_A029 5', mRNA sequence
Length = 905
Score = 46.1 bits (23), Expect = 0.001
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggc 233
||||| ||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct: 461 atgcattgccatctggacgtgcatatcacatgggggctggccatggc 507
>gb|DR178837.1|DR178837 RTMNUT1_14_G02.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_14_G02_A029 3', mRNA sequence
Length = 897
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| ||||||||||||| || |||||
Sbjct: 91 atgcactgccacttggacgtgcacataacatgggg 57
>gb|DR178921.1|DR178921 RTMNUT1_14_G02.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_14_G02_A029 5', mRNA sequence
Length = 734
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| ||||||||||||| || |||||
Sbjct: 414 atgcactgccacttggacgtgcacataacatgggg 380
>gb|AF132120.1|AF132120 Pinus taeda laccase (Lac2) mRNA, complete cds
Length = 1958
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| ||||||||||||| || |||||
Sbjct: 1680 atgcactgccacttggacgtgcacataacatgggg 1714
>dbj|BD224536.1| Materials and methods for the modification of plant lignin content
Length = 1352
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctgggg 221
|||||||||||| ||||||||||||| || |||||
Sbjct: 1143 atgcactgccacttggacgtgcacataacatgggg 1177
>gb|BX250739.1|BX250739 BX250739 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP040F08 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 630
Score = 44.1 bits (22), Expect = 0.004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatgg 232
||||| |||||| ||||||||||||| || |||||| | |||||||
Sbjct: 286 atgcattgccacttggacgtgcacataacatggggtttggccatgg 331
>gb|BE187465.1|BE187465 NXNV_98_F01_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_98_F01 5' similar to Arabidopsis thaliana sequence
At5g07130 laccase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 382
Score = 44.1 bits (22), Expect = 0.004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatgg 232
|||||||||||| ||||||| ||||| || |||||| | |||||||
Sbjct: 26 atgcactgccacttggacgtacacataacatggggtttggccatgg 71
>gb|BF518342.1|BF518342 NXSI_038_C03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_038_C03 5' similar to Arabidopsis thaliana
sequence At2g40370 putative laccase (diphenol oxidase)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 227
Score = 44.1 bits (22), Expect = 0.004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatgg 232
|||||||||||| ||||||| ||||| || |||||| | |||||||
Sbjct: 66 atgcactgccacttggacgtacacataacatggggtttggccatgg 111
>gb|BQ107883.1|BQ107883 NXLV101_H12_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV101_H12 5' similar to Arabidopsis thaliana
sequence At5g05390 laccase (diphenol oxidase) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 263
Score = 44.1 bits (22), Expect = 0.004
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacat 212
|||||||||||| |||||||||||||
Sbjct: 174 atgcactgccacttggacgtgcacat 199
>gb|DR166052.1|DR166052 RTPHOS1_9_B07.b2_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_9_B07_A029 3', mRNA sequence
Length = 647
Score = 44.1 bits (22), Expect = 0.004
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacat 212
|||||||||||| |||||||||||||
Sbjct: 251 atgcactgccacttggacgtgcacat 276
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,480
Number of Sequences: 355925
Number of extensions: 23480
Number of successful extensions: 6970
Number of sequences better than 0.5: 64
Number of HSP's better than 0.5 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6881
Number of HSP's gapped (non-prelim): 89
length of query: 405
length of database: 217,277,237
effective HSP length: 18
effective length of query: 387
effective length of database: 210,870,587
effective search space: 81606917169
effective search space used: 81606917169
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)