BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAM14e11.yg.2.1
(197 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO198402.1|CO198402 GEO1_13_H11.b1_A029 Root gravitropis... 38 0.12
gb|CO198469.1|CO198469 GEO1_13_H11.g1_A029 Root gravitropis... 38 0.12
gb|CO198878.1|CO198878 GEO1_17_F04.b1_A029 Root gravitropis... 38 0.12
gb|CO198958.1|CO198958 GEO1_17_F04.g1_A029 Root gravitropis... 38 0.12
gb|CO363362.1|CO363362 RTK1_9_F12.b1_A029 Roots minus potas... 38 0.12
gb|CO363447.1|CO363447 RTK1_9_F12.g1_A029 Roots minus potas... 38 0.12
gb|CO367306.1|CO367306 RTK1_33_B10.g1_A029 Roots minus pota... 38 0.12
gb|CO368064.1|CO368064 RTK1_38_A03.g1_A029 Roots minus pota... 38 0.12
gb|CX714117.1|CX714117 RTPQ1_18_A01.b1_A032 Roots treated w... 38 0.12
gb|CX714149.1|CX714149 RTPQ1_18_A01.g1_A032 Roots treated w... 38 0.12
gb|DR049316.1|DR049316 RTBOR1_15_H06.b1_A029 Roots plus add... 38 0.12
gb|DR049643.1|DR049643 RTBOR1_18_C09.b1_A029 Roots plus add... 38 0.12
gb|DR049961.1|DR049961 RTBOR1_20_F11.b1_A029 Roots plus add... 38 0.12
gb|DR050024.1|DR050024 RTBOR1_20_F11.g1_A029 Roots plus add... 38 0.12
gb|DR053440.1|DR053440 RTCA1_11_D09.b1_A029 Roots minus cal... 38 0.12
gb|DR090765.1|DR090765 RTAL1_17_F01.b1_A029 Roots plus adde... 38 0.12
gb|DR090846.1|DR090846 RTAL1_17_F01.g1_A029 Roots plus adde... 38 0.12
gb|DR102847.1|DR102847 STRR1_84_B02.g1_A033 Stem Response R... 38 0.12
gb|DR119127.1|DR119127 RTMG1_21_G09.b1_A029 Roots minus mag... 38 0.12
gb|DR119206.1|DR119206 RTMG1_21_G09.g1_A029 Roots minus mag... 38 0.12
gb|DR384743.1|DR384743 RTHG1_4_G02.b1_A029 Roots plus added... 38 0.12
>gb|CO198402.1|CO198402 GEO1_13_H11.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_13_H11_A029 3', mRNA sequence
Length = 761
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 111 tcgatctcctccttggaca 129
|||||||||||||||||||
Sbjct: 148 tcgatctcctccttggaca 130
>gb|CO198469.1|CO198469 GEO1_13_H11.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_13_H11_A029 5', mRNA sequence
Length = 757
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 111 tcgatctcctccttggaca 129
|||||||||||||||||||
Sbjct: 481 tcgatctcctccttggaca 463
>gb|CO198878.1|CO198878 GEO1_17_F04.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_17_F04_A029 3', mRNA sequence
Length = 669
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 111 tcgatctcctccttggaca 129
|||||||||||||||||||
Sbjct: 76 tcgatctcctccttggaca 58
>gb|CO198958.1|CO198958 GEO1_17_F04.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_17_F04_A029 5', mRNA sequence
Length = 758
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 111 tcgatctcctccttggaca 129
|||||||||||||||||||
Sbjct: 509 tcgatctcctccttggaca 491
>gb|CO363362.1|CO363362 RTK1_9_F12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_9_F12_A029 3', mRNA sequence
Length = 872
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 111 tcgatctcctccttggaca 129
|||||||||||||||||||
Sbjct: 342 tcgatctcctccttggaca 324
>gb|CO363447.1|CO363447 RTK1_9_F12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_9_F12_A029 5', mRNA sequence
Length = 779
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 111 tcgatctcctccttggaca 129
|||||||||||||||||||
Sbjct: 578 tcgatctcctccttggaca 560
>gb|CO367306.1|CO367306 RTK1_33_B10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_33_B10_A029 5', mRNA sequence
Length = 809
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 111 tcgatctcctccttggaca 129
|||||||||||||||||||
Sbjct: 360 tcgatctcctccttggaca 342
>gb|CO368064.1|CO368064 RTK1_38_A03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_38_A03_A029 5', mRNA sequence
Length = 800
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 111 tcgatctcctccttggaca 129
|||||||||||||||||||
Sbjct: 258 tcgatctcctccttggaca 240
>gb|CX714117.1|CX714117 RTPQ1_18_A01.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_18_A01_A032 3', mRNA sequence
Length = 637
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 111 tcgatctcctccttggaca 129
|||||||||||||||||||
Sbjct: 138 tcgatctcctccttggaca 156
>gb|CX714149.1|CX714149 RTPQ1_18_A01.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_18_A01_A032 5', mRNA sequence
Length = 781
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 111 tcgatctcctccttggaca 129
|||||||||||||||||||
Sbjct: 526 tcgatctcctccttggaca 544
>gb|DR049316.1|DR049316 RTBOR1_15_H06.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_15_H06_A029 3', mRNA sequence
Length = 605
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 111 tcgatctcctccttggaca 129
|||||||||||||||||||
Sbjct: 78 tcgatctcctccttggaca 60
>gb|DR049643.1|DR049643 RTBOR1_18_C09.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_18_C09_A029 3', mRNA sequence
Length = 620
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 111 tcgatctcctccttggaca 129
|||||||||||||||||||
Sbjct: 75 tcgatctcctccttggaca 57
>gb|DR049961.1|DR049961 RTBOR1_20_F11.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_20_F11_A029 3', mRNA sequence
Length = 814
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 111 tcgatctcctccttggaca 129
|||||||||||||||||||
Sbjct: 180 tcgatctcctccttggaca 162
>gb|DR050024.1|DR050024 RTBOR1_20_F11.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_20_F11_A029 5', mRNA sequence
Length = 752
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 111 tcgatctcctccttggaca 129
|||||||||||||||||||
Sbjct: 270 tcgatctcctccttggaca 252
>gb|DR053440.1|DR053440 RTCA1_11_D09.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_11_D09_A029 3', mRNA sequence
Length = 671
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 111 tcgatctcctccttggaca 129
|||||||||||||||||||
Sbjct: 129 tcgatctcctccttggaca 111
>gb|DR090765.1|DR090765 RTAL1_17_F01.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_17_F01_A029 3', mRNA sequence
Length = 824
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 111 tcgatctcctccttggaca 129
|||||||||||||||||||
Sbjct: 323 tcgatctcctccttggaca 305
>gb|DR090846.1|DR090846 RTAL1_17_F01.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_17_F01_A029 5', mRNA sequence
Length = 743
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 111 tcgatctcctccttggaca 129
|||||||||||||||||||
Sbjct: 626 tcgatctcctccttggaca 608
>gb|DR102847.1|DR102847 STRR1_84_B02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_84_B02_A033 5', mRNA sequence
Length = 769
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 111 tcgatctcctccttggaca 129
|||||||||||||||||||
Sbjct: 610 tcgatctcctccttggaca 628
>gb|DR119127.1|DR119127 RTMG1_21_G09.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_21_G09_A029 3', mRNA sequence
Length = 788
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 111 tcgatctcctccttggaca 129
|||||||||||||||||||
Sbjct: 225 tcgatctcctccttggaca 207
>gb|DR119206.1|DR119206 RTMG1_21_G09.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_21_G09_A029 5', mRNA sequence
Length = 729
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 111 tcgatctcctccttggaca 129
|||||||||||||||||||
Sbjct: 512 tcgatctcctccttggaca 494
>gb|DR384743.1|DR384743 RTHG1_4_G02.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_4_G02_A029 3', mRNA sequence
Length = 616
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 111 tcgatctcctccttggaca 129
|||||||||||||||||||
Sbjct: 74 tcgatctcctccttggaca 56
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,917
Number of Sequences: 355925
Number of extensions: 23917
Number of successful extensions: 6620
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6599
Number of HSP's gapped (non-prelim): 21
length of query: 197
length of database: 217,277,237
effective HSP length: 18
effective length of query: 179
effective length of database: 210,870,587
effective search space: 37745835073
effective search space used: 37745835073
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)