BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAH2a02.xg.2.1
(644 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR691891.1|DR691891 EST1081978 Normalized pine embryo li... 208 2e-052
dbj|BD235988.1| Materials and method for modification of pl... 157 7e-037
gb|DR384721.1|DR384721 RTHG1_4_D04.b1_A029 Roots plus added... 62 3e-008
gb|AA556522.1|AA556522 377 Loblolly pine C Pinus taeda cDNA... 56 2e-006
gb|CD022890.1|CD022890 NXPV_089_B01_F NXPV (Nsf Xylem Plani... 56 2e-006
gb|AY789650.1| Pinus taeda cellulose synthase catalytic sub... 56 2e-006
gb|DR059426.1|DR059426 RTNIT1_17_D03.g1_A029 Roots minus ni... 40 0.11
gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRN... 40 0.11
gb|DR742184.1|DR742184 RTCU1_2_G07.b1_A029 Roots plus added... 38 0.43
>gb|DR691891.1|DR691891 EST1081978 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADF24 3' end, mRNA sequence
Length = 788
Score = 208 bits (105), Expect = 2e-052
Identities = 192/221 (86%)
Strand = Plus / Plus
Query: 275 tttgtatctactgctgatccggagaaagaacctccactggtcacagcaaacactattctg 334
||||| || ||||||||||| |||||||| || ||||||||||| |||||||| || |||
Sbjct: 473 tttgtctccactgctgatccagagaaagagccaccactggtcactgcaaacacaatcctg 532
Query: 335 tccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatgatgga 394
|| |||||| |||| || ||||| |||||||||||| | |||||||| || |||||||||
Sbjct: 533 tcaatcctttctgccgattacccagtggagaagcttgcctgctatgtgtcagatgatgga 592
Query: 395 ggggctctcctgacttttgaagccatggctgaagctgctagctttgctaatatgtgggtt 454
|| ||||| || || |||||||||||||| |||||||| |||||||| |||| ||||||
Sbjct: 593 ggagctcttctcacatttgaagccatggcagaagctgcaagctttgcagatatttgggtt 652
Query: 455 cctttctgtcgcaagcacaacattgagcctcgcaatcctga 495
||||||||||||||||| |||||||| || |||||||||||
Sbjct: 653 cctttctgtcgcaagcataacattgaaccccgcaatcctga 693
Score = 48.1 bits (24), Expect = 4e-004
Identities = 96/120 (80%)
Strand = Plus / Plus
Query: 101 tggggcatgtctgttgtctgcgaactctggtttggtttttcatggctgctcgaccagctg 160
|||||||||||| |||| || ||| | ||||||| ||| |||||||| || || ||| ||
Sbjct: 299 tggggcatgtctattgtatgtgaattatggtttgctttctcatggctactggatcagttg 358
Query: 161 ccaaagctgtgccctgtgaaccgggccactgaccttgccgtcctgaaagacaagtttgag 220
||||| |||| ||| | || || ||||||| ||||| || || || ||||||||||||
Sbjct: 359 ccaaaattgtgtcctattaatcgctccactgatcttgctgttctcaaggacaagtttgag 418
>dbj|BD235988.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 400
Score = 157 bits (79), Expect = 7e-037
Identities = 145/167 (86%)
Strand = Plus / Plus
Query: 275 tttgtatctactgctgatccggagaaagaacctccactggtcacagcaaacactattctg 334
||||| || ||||||||||| |||||||| || ||||||||||| |||||||| || |||
Sbjct: 232 tttgtctccactgctgatccagagaaagagccaccactggtcactgcaaacacaatcctg 291
Query: 335 tccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatgatgga 394
|| |||||| ||||||| ||||| |||||||||||| | |||||||| || |||||||||
Sbjct: 292 tcaatcctttctgctgattacccagtggagaagcttgcctgctatgtgtcagatgatgga 351
Query: 395 ggggctctcctgacttttgaagccatggctgaagctgctagctttgc 441
|| ||||| || || |||||||||||||| |||||||| ||||||||
Sbjct: 352 ggagctcttctcacatttgaagccatggcagaagctgcaagctttgc 398
Score = 48.1 bits (24), Expect = 4e-004
Identities = 96/120 (80%)
Strand = Plus / Plus
Query: 101 tggggcatgtctgttgtctgcgaactctggtttggtttttcatggctgctcgaccagctg 160
|||||||||||| |||| || ||| | ||||||| ||| |||||||| || || ||| ||
Sbjct: 58 tggggcatgtctattgtatgtgaattatggtttgctttctcatggctactggatcagttg 117
Query: 161 ccaaagctgtgccctgtgaaccgggccactgaccttgccgtcctgaaagacaagtttgag 220
||||| |||| ||| | || || ||||||| ||||| || || || ||||||||||||
Sbjct: 118 ccaaaattgtgtcctattaatcgctccactgatcttgctgttctcaaggacaagtttgag 177
>gb|DR384721.1|DR384721 RTHG1_4_D04.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_4_D04_A029 3', mRNA sequence
Length = 749
Score = 61.9 bits (31), Expect = 3e-008
Identities = 91/111 (81%)
Strand = Plus / Minus
Query: 305 cctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtggag 364
||||| || ||||||||||| ||| ||||||| |||||||| | || || ||||| ||
Sbjct: 422 cctcctcttgtcacagcaaatactgttctgtctatccttgccgtggattatcctgtcgat 363
Query: 365 aagctttcttgctatgtttctgatgatggaggggctctcctgacttttgaa 415
|| |||| |||||||||||||||||||||| ||| | |||||||||||
Sbjct: 362 aaagtttcatgctatgtttctgatgatggagcggcaatgttgacttttgaa 312
>gb|AA556522.1|AA556522 377 Loblolly pine C Pinus taeda cDNA clone 3C11G, mRNA sequence
Length = 718
Score = 56.0 bits (28), Expect = 2e-006
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 330 ttctgtccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatg 389
|||||||||| || |||| || |||||||||||||| ||||||||||||| ||||| |
Sbjct: 359 ttctgtccattctggctgtggattaccctgtggagaaagtttcttgctatgtctctgacg 418
Query: 390 atgg 393
||||
Sbjct: 419 atgg 422
>gb|CD022890.1|CD022890 NXPV_089_B01_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_089_B01 5' similar to Arabidopsis
thaliana sequence At5g64740 cellulose synthase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 151
Score = 56.0 bits (28), Expect = 2e-006
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 330 ttctgtccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatg 389
|||||||||| || |||| || |||||||||||||| ||||||||||||| ||||| |
Sbjct: 33 ttctgtccattctggctgtggattaccctgtggagaaagtttcttgctatgtctctgacg 92
Query: 390 atgg 393
||||
Sbjct: 93 atgg 96
>gb|AY789650.1| Pinus taeda cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3127
Score = 56.0 bits (28), Expect = 2e-006
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 330 ttctgtccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatg 389
|||||||||| || |||| || |||||||||||||| ||||||||||||| ||||| |
Sbjct: 872 ttctgtccattctggctgtggattaccctgtggagaaagtttcttgctatgtctctgacg 931
Query: 390 atgg 393
||||
Sbjct: 932 atgg 935
>gb|DR059426.1|DR059426 RTNIT1_17_D03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_17_D03_A029 5', mRNA sequence
Length = 862
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 356 cctgtggagaagctttcttgctatgtttctgatgatggag 395
||||| || ||| |||| |||||||||||||| |||||||
Sbjct: 171 cctgttgacaaggtttcctgctatgtttctgacgatggag 210
>gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRNA, partial cds
Length = 3603
Score = 40.1 bits (20), Expect = 0.11
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 356 cctgtggagaagctttcttgctatgtttctgatgatggag 395
||||| || ||| |||| |||||||||||||| |||||||
Sbjct: 1105 cctgttgacaaggtttcctgctatgtttctgacgatggag 1144
>gb|DR742184.1|DR742184 RTCU1_2_G07.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_2_G07_A029 3', mRNA sequence
Length = 689
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 309 cactggtcacagcaaacac 327
|||||||||||||||||||
Sbjct: 610 cactggtcacagcaaacac 592
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 73,464
Number of Sequences: 355925
Number of extensions: 73464
Number of successful extensions: 19407
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19389
Number of HSP's gapped (non-prelim): 15
length of query: 644
length of database: 217,277,237
effective HSP length: 19
effective length of query: 625
effective length of database: 210,514,662
effective search space: 131571663750
effective search space used: 131571663750
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)