BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAF31c07.yg.2.3
         (732 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BX252725.1|BX252725  BX252725 Pinus pinaster differenciat...    96   2e-018

>gb|BX252725.1|BX252725 BX252725 Pinus pinaster differenciating xylem adult Pinus pinaster
           cDNA clone PP069G07, mRNA sequence
          Length = 681

 Score = 95.6 bits (48), Expect = 2e-018
 Identities = 111/132 (84%)
 Strand = Plus / Plus

                                                                       
Query: 401 atggattggatcattcacctcgatactgatgagttgattcatccagctggtgcccgagag 460
           ||||||||||| ||||| || ||||| |||||| |  |||||||||| |||||| |||||
Sbjct: 15  atggattggattattcatcttgataccgatgagcttcttcatccagcaggtgccagagag 74

                                                                       
Query: 461 tactccctgaggcgattgcttttagatgttcctgacaacgttgacatggttatcttcccc 520
           ||||| ||||||| |||||| |||||||||||  | || ||||| |||||  ||||||| 
Sbjct: 75  tactcactgaggcaattgctattagatgttccaaataatgttgatatggtggtcttccca 134

                       
Query: 521 aattatgtgagt 532
           ||||||| ||||
Sbjct: 135 aattatgagagt 146



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 68,382
Number of Sequences: 355925
Number of extensions: 68382
Number of successful extensions: 17451
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17449
Number of HSP's gapped (non-prelim): 2
length of query: 732
length of database: 217,277,237
effective HSP length: 19
effective length of query: 713
effective length of database: 210,514,662
effective search space: 150096954006
effective search space used: 150096954006
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)