BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF31c07.yg.2.1
(352 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF664888.1|CF664888 RTCNT1_12_C04.g1_A029 Root control P... 38 0.23
gb|CF666303.1|CF666303 RTCNT1_22_G10.b1_A029 Root control P... 36 0.91
gb|CF666377.1|CF666377 RTCNT1_22_G10.g1_A029 Root control P... 36 0.91
gb|CO173255.1|CO173255 NDL1_35_B06.b1_A029 Needles control ... 36 0.91
gb|CO173328.1|CO173328 NDL1_35_B06.g1_A029 Needles control ... 36 0.91
gb|CV036390.1|CV036390 RTNACL1_59_A05.b1_A029 Roots plus ad... 36 0.91
gb|CV036465.1|CV036465 RTNACL1_59_A05.g1_A029 Roots plus ad... 36 0.91
gb|CX652103.1|CX652103 COLD1_57_A03.b1_A029 Root cold Pinus... 36 0.91
gb|CX652175.1|CX652175 COLD1_57_A03.g1_A029 Root cold Pinus... 36 0.91
gb|DR015524.1|DR015524 STRS1_4_B11.b1_A034 Shoot tip pitch ... 36 0.91
gb|DR015604.1|DR015604 STRS1_4_B11.g1_A034 Shoot tip pitch ... 36 0.91
gb|DR169140.1|DR169140 RTPHOS1_30_G10.b1_A029 Roots minus p... 36 0.91
gb|BG039747.1|BG039747 NXSI_103_D11_F NXSI (Nsf Xylem Side ... 34 3.6
gb|CF397573.1|CF397573 RTDS3_4_D09.b2_A022 Drought-stressed... 34 3.6
gb|CO171876.1|CO171876 NDL1_25_G07.b1_A029 Needles control ... 34 3.6
gb|CO171938.1|CO171938 NDL1_25_G07.g1_A029 Needles control ... 34 3.6
gb|DR020347.1|DR020347 STRS1_36_G04.b1_A034 Shoot tip pitch... 34 3.6
gb|DR020417.1|DR020417 STRS1_36_G04.g1_A034 Shoot tip pitch... 34 3.6
gb|DR072747.1|DR072747 RTDK1_28_G08.b1_A029 Roots, dark Pin... 34 3.6
gb|DR072827.1|DR072827 RTDK1_28_G08.g1_A029 Roots, dark Pin... 34 3.6
gb|DR090566.1|DR090566 RTAL1_16_A10.b1_A029 Roots plus adde... 34 3.6
gb|DR090641.1|DR090641 RTAL1_16_A10.g1_A029 Roots plus adde... 34 3.6
gb|DR111100.1|DR111100 RTS1_15_F07.b1_A029 Roots minus sulf... 34 3.6
gb|DR111159.1|DR111159 RTS1_15_F07.g1_A029 Roots minus sulf... 34 3.6
>gb|CF664888.1|CF664888 RTCNT1_12_C04.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_12_C04_A029 5', mRNA sequence
Length = 546
Score = 38.2 bits (19), Expect = 0.23
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 35 acaccagattcttccatgg 53
|||||||||||||||||||
Sbjct: 329 acaccagattcttccatgg 347
>gb|CF666303.1|CF666303 RTCNT1_22_G10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_22_G10_A029 3', mRNA sequence
Length = 493
Score = 36.2 bits (18), Expect = 0.91
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 36 caccagattcttccatgg 53
||||||||||||||||||
Sbjct: 134 caccagattcttccatgg 117
>gb|CF666377.1|CF666377 RTCNT1_22_G10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_22_G10_A029 5', mRNA sequence
Length = 492
Score = 36.2 bits (18), Expect = 0.91
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 36 caccagattcttccatgg 53
||||||||||||||||||
Sbjct: 111 caccagattcttccatgg 94
>gb|CO173255.1|CO173255 NDL1_35_B06.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_35_B06_A029 3', mRNA sequence
Length = 669
Score = 36.2 bits (18), Expect = 0.91
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 103 aaggagaggctgcaaagc 120
||||||||||||||||||
Sbjct: 231 aaggagaggctgcaaagc 214
>gb|CO173328.1|CO173328 NDL1_35_B06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_35_B06_A029 5', mRNA sequence
Length = 758
Score = 36.2 bits (18), Expect = 0.91
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 103 aaggagaggctgcaaagc 120
||||||||||||||||||
Sbjct: 668 aaggagaggctgcaaagc 651
>gb|CV036390.1|CV036390 RTNACL1_59_A05.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_59_A05_A029 3', mRNA sequence
Length = 727
Score = 36.2 bits (18), Expect = 0.91
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 103 aaggagaggctgcaaagc 120
||||||||||||||||||
Sbjct: 233 aaggagaggctgcaaagc 216
>gb|CV036465.1|CV036465 RTNACL1_59_A05.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_59_A05_A029 5', mRNA sequence
Length = 788
Score = 36.2 bits (18), Expect = 0.91
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 103 aaggagaggctgcaaagc 120
||||||||||||||||||
Sbjct: 376 aaggagaggctgcaaagc 359
>gb|CX652103.1|CX652103 COLD1_57_A03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_57_A03_A029 3', mRNA sequence
Length = 672
Score = 36.2 bits (18), Expect = 0.91
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 103 aaggagaggctgcaaagc 120
||||||||||||||||||
Sbjct: 122 aaggagaggctgcaaagc 105
>gb|CX652175.1|CX652175 COLD1_57_A03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_57_A03_A029 5', mRNA sequence
Length = 644
Score = 36.2 bits (18), Expect = 0.91
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 103 aaggagaggctgcaaagc 120
||||||||||||||||||
Sbjct: 116 aaggagaggctgcaaagc 99
>gb|DR015524.1|DR015524 STRS1_4_B11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_4_B11_A034 3', mRNA sequence
Length = 780
Score = 36.2 bits (18), Expect = 0.91
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 103 aaggagaggctgcaaagc 120
||||||||||||||||||
Sbjct: 294 aaggagaggctgcaaagc 277
>gb|DR015604.1|DR015604 STRS1_4_B11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_4_B11_A034 5', mRNA sequence
Length = 894
Score = 36.2 bits (18), Expect = 0.91
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 103 aaggagaggctgcaaagc 120
||||||||||||||||||
Sbjct: 802 aaggagaggctgcaaagc 785
>gb|DR169140.1|DR169140 RTPHOS1_30_G10.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_30_G10_A029 3', mRNA sequence
Length = 790
Score = 36.2 bits (18), Expect = 0.91
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 103 aaggagaggctgcaaagc 120
||||||||||||||||||
Sbjct: 281 aaggagaggctgcaaagc 264
>gb|BG039747.1|BG039747 NXSI_103_D11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_103_D11 5' similar to Arabidopsis thaliana
sequence At4g39330 cinnamyl-alcohol dehydrogenase CAD1
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 544
Score = 34.2 bits (17), Expect = 3.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 104 aggagaggctgcaaagc 120
|||||||||||||||||
Sbjct: 326 aggagaggctgcaaagc 310
>gb|CF397573.1|CF397573 RTDS3_4_D09.b2_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_4_D09_A022 3', mRNA sequence
Length = 607
Score = 34.2 bits (17), Expect = 3.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 104 aggagaggctgcaaagc 120
|||||||||||||||||
Sbjct: 93 aggagaggctgcaaagc 77
>gb|CO171876.1|CO171876 NDL1_25_G07.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_25_G07_A029 3', mRNA sequence
Length = 817
Score = 34.2 bits (17), Expect = 3.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 104 aggagaggctgcaaagc 120
|||||||||||||||||
Sbjct: 327 aggagaggctgcaaagc 311
>gb|CO171938.1|CO171938 NDL1_25_G07.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_25_G07_A029 5', mRNA sequence
Length = 696
Score = 34.2 bits (17), Expect = 3.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 104 aggagaggctgcaaagc 120
|||||||||||||||||
Sbjct: 398 aggagaggctgcaaagc 382
>gb|DR020347.1|DR020347 STRS1_36_G04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_36_G04_A034 3', mRNA sequence
Length = 782
Score = 34.2 bits (17), Expect = 3.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 104 aggagaggctgcaaagc 120
|||||||||||||||||
Sbjct: 93 aggagaggctgcaaagc 77
>gb|DR020417.1|DR020417 STRS1_36_G04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_36_G04_A034 5', mRNA sequence
Length = 262
Score = 34.2 bits (17), Expect = 3.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 104 aggagaggctgcaaagc 120
|||||||||||||||||
Sbjct: 191 aggagaggctgcaaagc 175
>gb|DR072747.1|DR072747 RTDK1_28_G08.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_28_G08_A029 3', mRNA sequence
Length = 638
Score = 34.2 bits (17), Expect = 3.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 104 aggagaggctgcaaagc 120
|||||||||||||||||
Sbjct: 26 aggagaggctgcaaagc 10
>gb|DR072827.1|DR072827 RTDK1_28_G08.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_28_G08_A029 5', mRNA sequence
Length = 368
Score = 34.2 bits (17), Expect = 3.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 104 aggagaggctgcaaagc 120
|||||||||||||||||
Sbjct: 264 aggagaggctgcaaagc 248
>gb|DR090566.1|DR090566 RTAL1_16_A10.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_16_A10_A029 3', mRNA sequence
Length = 763
Score = 34.2 bits (17), Expect = 3.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 104 aggagaggctgcaaagc 120
|||||||||||||||||
Sbjct: 232 aggagaggctgcaaagc 216
>gb|DR090641.1|DR090641 RTAL1_16_A10.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_16_A10_A029 5', mRNA sequence
Length = 777
Score = 34.2 bits (17), Expect = 3.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 104 aggagaggctgcaaagc 120
|||||||||||||||||
Sbjct: 592 aggagaggctgcaaagc 576
>gb|DR111100.1|DR111100 RTS1_15_F07.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_15_F07_A029 3', mRNA sequence
Length = 608
Score = 34.2 bits (17), Expect = 3.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 104 aggagaggctgcaaagc 120
|||||||||||||||||
Sbjct: 46 aggagaggctgcaaagc 30
>gb|DR111159.1|DR111159 RTS1_15_F07.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_15_F07_A029 5', mRNA sequence
Length = 618
Score = 34.2 bits (17), Expect = 3.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 104 aggagaggctgcaaagc 120
|||||||||||||||||
Sbjct: 527 aggagaggctgcaaagc 511
Database: Pinus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:25 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,835
Number of Sequences: 355925
Number of extensions: 22835
Number of successful extensions: 6587
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6563
Number of HSP's gapped (non-prelim): 24
length of query: 352
length of database: 217,277,237
effective HSP length: 18
effective length of query: 334
effective length of database: 210,870,587
effective search space: 70430776058
effective search space used: 70430776058
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)