BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE6a06.yg.3.1
(2118 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX248969.1|BX248969 BX248969 Pinus pinaster differenciat... 62 1e-007
gb|CF393526.1|CF393526 RTDR3_13_C09.g1_A022 Loblolly pine r... 62 1e-007
gb|DR691255.1|DR691255 EST1081341 Normalized pine embryo li... 62 1e-007
gb|DT636640.1|DT636640 EST1151571 Normalized pine embryo li... 62 1e-007
gb|DR049364.1|DR049364 RTBOR1_16_A01.b1_A029 Roots plus add... 52 1e-004
gb|DR109803.1|DR109803 RTS1_5_B08.b1_A029 Roots minus sulfu... 52 1e-004
gb|DR168958.1|DR168958 RTPHOS1_29_A11.b1_A029 Roots minus p... 52 1e-004
gb|DR169021.1|DR169021 RTPHOS1_29_A11.g1_A029 Roots minus p... 52 1e-004
gb|DR692062.1|DR692062 EST1082149 Normalized pine embryo li... 52 1e-004
gb|DT637125.1|DT637125 EST1152056 Normalized pine embryo li... 52 1e-004
gb|CZ895901.1|CZ895901 226_1_12340873_5489_37958_033 Pine m... 42 0.092
>gb|BX248969.1|BX248969 BX248969 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP003D01, mRNA sequence
Length = 682
Score = 61.9 bits (31), Expect = 1e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 651 tagaattctatgagactcttctaggatttgtgaacttcaaact 693
||||||| |||||||||||| ||||||||||||| ||||||||
Sbjct: 305 tagaattttatgagactcttataggatttgtgaatttcaaact 347
Score = 42.1 bits (21), Expect = 0.092
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 357 ttgatgctcttcgtgacttggatga 381
||||||||||||||||| |||||||
Sbjct: 11 ttgatgctcttcgtgacctggatga 35
>gb|CF393526.1|CF393526 RTDR3_13_C09.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_13_C09_A022 5', mRNA
sequence
Length = 740
Score = 61.9 bits (31), Expect = 1e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 651 tagaattctatgagactcttctaggatttgtgaacttcaaact 693
||||||| |||||||||||| ||||||||||||| ||||||||
Sbjct: 406 tagaattttatgagactcttataggatttgtgaatttcaaact 448
Score = 42.1 bits (21), Expect = 0.092
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 357 ttgatgctcttcgtgacttggatga 381
||||||||||||||||| |||||||
Sbjct: 112 ttgatgctcttcgtgacctggatga 136
>gb|DR691255.1|DR691255 EST1081341 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD614 3' end, mRNA sequence
Length = 684
Score = 61.9 bits (31), Expect = 1e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 651 tagaattctatgagactcttctaggatttgtgaacttcaaact 693
||||||| |||||||||||| ||||||||||||| ||||||||
Sbjct: 148 tagaattttatgagactcttataggatttgtgaatttcaaact 190
>gb|DT636640.1|DT636640 EST1151571 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGU20 3' end, mRNA sequence
Length = 756
Score = 61.9 bits (31), Expect = 1e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 651 tagaattctatgagactcttctaggatttgtgaacttcaaact 693
||||||| |||||||||||| ||||||||||||| ||||||||
Sbjct: 156 tagaattttatgagactcttataggatttgtgaatttcaaact 198
>gb|DR049364.1|DR049364 RTBOR1_16_A01.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_16_A01_A029 3', mRNA sequence
Length = 799
Score = 52.0 bits (26), Expect = 1e-004
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 1307 gttggaagagtacctccaccacatttgtctccttttgtggacaatgatgccgagggctac 1366
|||||||| || |||||||| ||| |||| |||||||| ||| | || || || ||||||
Sbjct: 735 gttggaagggttcctccacctcatctgtcaccttttgttgacgaggaagcagaaggctac 676
Query: 1367 atgcctgagtatgc 1380
||||| ||||||||
Sbjct: 675 atgccagagtatgc 662
>gb|DR109803.1|DR109803 RTS1_5_B08.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_5_B08_A029 3', mRNA sequence
Length = 423
Score = 52.0 bits (26), Expect = 1e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 1307 gttggaagagtacctccaccacatttgtctccttttgtggacaatgatgccgagggctac 1366
|||||||| || |||||||| ||| |||| |||||||| ||| | || || || ||||||
Sbjct: 13 gttggaagggttcctccacctcatctgtcaccttttgttgacgaggaagcagaaggctac 72
Query: 1367 atgcctgagtatgc 1380
||||| ||||||||
Sbjct: 73 atgccagagtatgc 86
>gb|DR168958.1|DR168958 RTPHOS1_29_A11.b1_A029 Roots minus phosphorous Pinus taeda cDNA clone
RTPHOS1_29_A11_A029 3', mRNA sequence
Length = 801
Score = 52.0 bits (26), Expect = 1e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 1307 gttggaagagtacctccaccacatttgtctccttttgtggacaatgatgccgagggctac 1366
|||||||| || |||||||| ||| |||| |||||||| ||| | || || || ||||||
Sbjct: 301 gttggaagggttcctccacctcatctgtcaccttttgttgacgaggaagcagaaggctac 360
Query: 1367 atgcctgagtatgc 1380
||||| ||||||||
Sbjct: 361 atgccagagtatgc 374
>gb|DR169021.1|DR169021 RTPHOS1_29_A11.g1_A029 Roots minus phosphorous Pinus taeda cDNA clone
RTPHOS1_29_A11_A029 5', mRNA sequence
Length = 772
Score = 52.0 bits (26), Expect = 1e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 1307 gttggaagagtacctccaccacatttgtctccttttgtggacaatgatgccgagggctac 1366
|||||||| || |||||||| ||| |||| |||||||| ||| | || || || ||||||
Sbjct: 296 gttggaagggttcctccacctcatctgtcaccttttgttgacgaggaagcagaaggctac 355
Query: 1367 atgcctgagtatgc 1380
||||| ||||||||
Sbjct: 356 atgccagagtatgc 369
>gb|DR692062.1|DR692062 EST1082149 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADH52 3' end, mRNA sequence
Length = 676
Score = 52.0 bits (26), Expect = 1e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 1307 gttggaagagtacctccaccacatttgtctccttttgtggacaatgatgccgagggctac 1366
|||||||| || |||||||| ||| |||| |||||||| ||| | || || || ||||||
Sbjct: 156 gttggaagggttcctccacctcatctgtcaccttttgttgacgaggaagcagaaggctac 215
Query: 1367 atgcctgagtatgc 1380
||||| ||||||||
Sbjct: 216 atgccagagtatgc 229
>gb|DT637125.1|DT637125 EST1152056 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH002 3' end, mRNA sequence
Length = 838
Score = 52.0 bits (26), Expect = 1e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 1307 gttggaagagtacctccaccacatttgtctccttttgtggacaatgatgccgagggctac 1366
|||||||| || |||||||| ||| |||| |||||||| ||| | || || || ||||||
Sbjct: 164 gttggaagggttcctccacctcatctgtcaccttttgttgacgaggaagcagaaggctac 223
Query: 1367 atgcctgagtatgc 1380
||||| ||||||||
Sbjct: 224 atgccagagtatgc 237
>gb|CZ895901.1|CZ895901 226_1_12340873_5489_37958_033 Pine methylation unfiltered library
(LibID: 226) Pinus taeda genomic, DNA sequence
Length = 740
Score = 42.1 bits (21), Expect = 0.092
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1310 ggaagagtacctccaccacat 1330
|||||||||||||||||||||
Sbjct: 160 ggaagagtacctccaccacat 180
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 316,484
Number of Sequences: 355925
Number of extensions: 316484
Number of successful extensions: 86093
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86056
Number of HSP's gapped (non-prelim): 37
length of query: 2118
length of database: 217,277,237
effective HSP length: 20
effective length of query: 2098
effective length of database: 210,158,737
effective search space: 440913030226
effective search space used: 440913030226
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)