BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE23e10.yg.3.1
(2083 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO368789.1|CO368789 RTK1_42_G08.g1_A029 Roots minus pota... 274 1e-071
gb|CF477443.1|CF477443 RTWW3_7_E08.g1_A022 Well-watered lob... 250 2e-064
gb|DR070329.1|DR070329 RTDK1_12_D09.g1_A029 Roots, dark Pin... 232 5e-059
gb|DR181543.1|DR181543 RTMNUT1_39_C02.g2_A029 Roots minus m... 232 5e-059
gb|DR683762.1|DR683762 EST1073838 Normalized pine embryo li... 218 7e-055
gb|CF479058.1|CF479058 RTWW3_21_D06.g1_A022 Well-watered lo... 202 4e-050
gb|DR689976.1|DR689976 EST1080062 Normalized pine embryo li... 202 4e-050
gb|DR742125.1|DR742125 RTCU1_1_H04.g1_A029 Roots plus added... 202 4e-050
gb|DR019238.1|DR019238 STRS1_28_D12.g1_A034 Shoot tip pitch... 190 2e-046
gb|CO366763.1|CO366763 RTK1_29_H10.g1_A029 Roots minus pota... 182 4e-044
gb|DR053644.1|DR053644 RTCA1_12_A10.g1_A029 Roots minus cal... 182 4e-044
gb|DR160064.1|DR160064 RTFE1_3_B06.g1_A029 Roots minus iron... 182 4e-044
gb|DR054577.1|DR054577 RTCA1_18_E09.b1_A029 Roots minus cal... 178 6e-043
gb|DR091921.1|DR091921 RTAL1_24_H02.g1_A029 Roots plus adde... 178 6e-043
gb|DR387362.1|DR387362 RTHG1_21_F04.b1_A029 Roots plus adde... 178 6e-043
gb|CX713497.1|CX713497 RTPQ1_9_G11.g1_A032 Roots treated wi... 176 2e-042
gb|DR013932.1|DR013932 HEAT1_22_H12.b1_A029 Root at 37 C fo... 176 2e-042
gb|CV147137.1|CV147137 EST858346 Sequencing ESTs from loblo... 165 9e-039
gb|DR388367.1|DR388367 RTHG1_27_G05.g1_A029 Roots plus adde... 165 9e-039
gb|CX651317.1|CX651317 COLD1_51_C02.g1_A029 Root cold Pinus... 157 2e-036
gb|BE187282.1|BE187282 NXNV_162_A06_F Nsf Xylem Normal wood... 151 1e-034
gb|BG673792.1|BG673792 NXPV_075_B05_F NXPV (Nsf Xylem Plani... 147 2e-033
gb|BQ697846.1|BQ697846 NXPV_061_E12_F NXPV (Nsf Xylem Plani... 147 2e-033
gb|BM157547.1|BM157547 NXLV_020_H09_F NXLV (Nsf Xylem Late ... 145 8e-033
gb|CF402471.1|CF402471 RTWW1_17_F10.g1_A015 Well-watered lo... 143 3e-032
gb|DR057039.1|DR057039 RTNIT1_2_D08.b1_A029 Roots minus nit... 143 3e-032
gb|DR384615.1|DR384615 RTHG1_3_A03.g1_A029 Roots plus added... 143 3e-032
gb|AI812847.1|AI812847 20G10 Pine Lambda Zap Xylem library ... 139 5e-031
gb|DR742917.1|DR742917 RTCU1_7_G07.g2_A029 Roots plus added... 139 5e-031
gb|AW043038.1|AW043038 ST28E05 Pine TriplEx shoot tip libra... 137 2e-030
gb|CO169818.1|CO169818 NDL1_9_G08.g1_A029 Needles control P... 135 8e-030
gb|DR743574.1|DR743574 RTCU1_16_F11.g1_A029 Roots plus adde... 129 5e-028
gb|DR161215.1|DR161215 RTFE1_10_B11.g1_A029 Roots minus iro... 125 8e-027
gb|BQ695608.1|BQ695608 NXPV_030_E11_F NXPV (Nsf Xylem Plani... 123 3e-026
gb|BQ698162.1|BQ698162 NXPV_067_C02_F NXPV (Nsf Xylem Plani... 123 3e-026
gb|BF777973.1|BF777973 NXSI_079_E01_F NXSI (Nsf Xylem Side ... 121 1e-025
gb|BG833030.1|BG833030 NXPV_088_B08_F NXPV (Nsf Xylem Plani... 119 5e-025
gb|DR112239.1|DR112239 RTS1_26_G07.g1_A029 Roots minus sulf... 119 5e-025
gb|DR746417.1|DR746417 RTCU1_36_G04.g1_A029 Roots plus adde... 119 5e-025
gb|AL750030.1|AL750030 AL750030 AS Pinus pinaster cDNA clon... 115 8e-024
gb|BX248891.1|BX248891 BX248891 Pinus pinaster differenciat... 115 8e-024
gb|BX249449.1|BX249449 BX249449 Pinus pinaster differenciat... 115 8e-024
gb|BI202706.1|BI202706 NXPV_097_B09_F NXPV (Nsf Xylem Plani... 115 8e-024
gb|BQ655225.1|BQ655225 NXRV091_F09_F NXRV (Nsf Xylem Root w... 115 8e-024
gb|CO413870.1|CO413870 EST844255 Sequencing ESTs from loblo... 115 8e-024
gb|CO368711.1|CO368711 RTK1_42_G08.b1_A029 Roots minus pota... 115 8e-024
gb|CV034685.1|CV034685 RTNACL1_10_H06.g1_A029 Roots plus ad... 115 8e-024
gb|DN447027.1|DN447027 EST942826 Sequencing ESTs from loblo... 115 8e-024
gb|DN453530.1|DN453530 EST949329 Sequencing ESTs from loblo... 115 8e-024
gb|DN460440.1|DN460440 EST956239 Sequencing ESTs from loblo... 115 8e-024
gb|BX252128.1|BX252128 BX252128 Pinus pinaster differenciat... 111 1e-022
gb|CO368591.1|CO368591 RTK1_41_C09.g1_A029 Roots minus pota... 109 5e-022
gb|DN461888.1|DN461888 EST957687 Sequencing ESTs from loblo... 109 5e-022
gb|AA739530.1|AA739530 295 PtIFG2 Pinus taeda cDNA clone 84... 107 2e-021
gb|BQ197042.1|BQ197042 NXLV108_F07_F NXLV (Nsf Xylem Late w... 107 2e-021
gb|CF384976.1|CF384976 RTDR1_1_B09.b1_A015 Loblolly pine ro... 107 2e-021
gb|CF386802.1|CF386802 RTDR1_16_G04.g1_A015 Loblolly pine r... 107 2e-021
gb|CF478971.1|CF478971 RTWW3_21_D06.b1_A022 Well-watered lo... 107 2e-021
gb|CF671332.1|CF671332 RTCNT1_56_H05.b1_A029 Root control P... 107 2e-021
gb|CO163706.1|CO163706 FLD1_43_F08.b1_A029 Root flooded Pin... 107 2e-021
gb|CO166461.1|CO166461 FLD1_62_E06.b1_A029 Root flooded Pin... 107 2e-021
gb|CO169742.1|CO169742 NDL1_9_G08.b1_A029 Needles control P... 107 2e-021
gb|CO201633.1|CO201633 RTCNT2_7_C11.b1_A029 Root control 2 ... 107 2e-021
gb|CO366684.1|CO366684 RTK1_29_H10.b1_A029 Roots minus pota... 107 2e-021
gb|CV032656.1|CV032656 RTNACL1_17_C04.g1_A029 Roots plus ad... 107 2e-021
gb|CV034615.1|CV034615 RTNACL1_10_H06.b1_A029 Roots plus ad... 107 2e-021
gb|CX653135.1|CX653135 COLD1_63_D02.g1_A029 Root cold Pinus... 107 2e-021
gb|CX713448.1|CX713448 RTPQ1_9_G11.b1_A032 Roots treated wi... 107 2e-021
gb|DR014019.1|DR014019 HEAT1_22_H12.g1_A029 Root at 37 C fo... 107 2e-021
gb|DR018140.1|DR018140 STRS1_20_E10.g1_A034 Shoot tip pitch... 107 2e-021
gb|DR019157.1|DR019157 STRS1_28_D12.b2_A034 Shoot tip pitch... 107 2e-021
gb|DR020892.1|DR020892 STRS1_40_A08.b1_A034 Shoot tip pitch... 107 2e-021
gb|DR021378.1|DR021378 STRS1_44_F05.b1_A034 Shoot tip pitch... 107 2e-021
gb|DR022447.1|DR022447 STRS1_51_C12.b1_A034 Shoot tip pitch... 107 2e-021
gb|DR054657.1|DR054657 RTCA1_18_E09.g1_A029 Roots minus cal... 107 2e-021
gb|DR057109.1|DR057109 RTNIT1_2_D08.g1_A029 Roots minus nit... 107 2e-021
gb|DR057703.1|DR057703 RTNIT1_7_G11.b1_A029 Roots minus nit... 107 2e-021
gb|DR070242.1|DR070242 RTDK1_12_D09.b1_A029 Roots, dark Pin... 107 2e-021
gb|DR079092.1|DR079092 RTFEPL1_9_B11.b1_A029 Roots plus add... 107 2e-021
gb|DR081244.1|DR081244 RTFEPL1_28_G12.b1_A029 Roots plus ad... 107 2e-021
gb|DR095672.1|DR095672 STRR1_22_G04.g1_A033 Stem Response R... 107 2e-021
gb|DR096727.1|DR096727 STRR1_29_H04.g1_A033 Stem Response R... 107 2e-021
gb|DR109542.1|DR109542 RTS1_3_B08.b1_A029 Roots minus sulfu... 107 2e-021
gb|DR110531.1|DR110531 RTS1_11_A03.g1_A029 Roots minus sulf... 107 2e-021
gb|DR112164.1|DR112164 RTS1_26_G07.b1_A029 Roots minus sulf... 107 2e-021
gb|DR120852.1|DR120852 RTMG1_32_H09.b1_A029 Roots minus mag... 107 2e-021
gb|DR162187.1|DR162187 RTFE1_16_G03.b1_A029 Roots minus iro... 107 2e-021
gb|DR178226.1|DR178226 RTMNUT1_10_E09.b1_A029 Roots minus m... 107 2e-021
gb|DR180487.1|DR180487 RTMNUT1_33_A06.b1_A029 Roots minus m... 107 2e-021
gb|DR180561.1|DR180561 RTMNUT1_33_A06.g1_A029 Roots minus m... 107 2e-021
gb|DR181457.1|DR181457 RTMNUT1_39_C02.b2_A029 Roots minus m... 107 2e-021
gb|DR384546.1|DR384546 RTHG1_3_A03.b1_A029 Roots plus added... 107 2e-021
gb|DR386272.1|DR386272 RTHG1_14_B09.b1_A029 Roots plus adde... 107 2e-021
gb|DR386343.1|DR386343 RTHG1_14_B09.g1_A029 Roots plus adde... 107 2e-021
gb|DR387438.1|DR387438 RTHG1_21_F04.g2_A029 Roots plus adde... 107 2e-021
gb|DR742838.1|DR742838 RTCU1_7_G07.b2_A029 Roots plus added... 107 2e-021
gb|DR743499.1|DR743499 RTCU1_16_F11.b1_A029 Roots plus adde... 107 2e-021
gb|DR746338.1|DR746338 RTCU1_36_G04.b1_A029 Roots plus adde... 107 2e-021
gb|BG832908.1|BG832908 NXPV_083_C08_F NXPV (Nsf Xylem Plani... 105 7e-021
gb|CF387540.1|CF387540 RTDR1_20_B03.g1_A015 Loblolly pine r... 105 7e-021
gb|CO410876.1|CO410876 EST841261 Sequencing ESTs from loblo... 105 7e-021
gb|CO368512.1|CO368512 RTK1_41_C09.b1_A029 Roots minus pota... 105 7e-021
gb|CV134688.1|CV134688 EST845897 Sequencing ESTs from loblo... 105 7e-021
gb|CV143410.1|CV143410 EST854619 Sequencing ESTs from loblo... 105 7e-021
gb|DN461578.1|DN461578 EST957377 Sequencing ESTs from loblo... 105 7e-021
gb|DR057409.1|DR057409 RTNIT1_5_D08.g1_A029 Roots minus nit... 105 7e-021
gb|DR057792.1|DR057792 RTNIT1_7_G11.g1_A029 Roots minus nit... 105 7e-021
gb|DR079166.1|DR079166 RTFEPL1_9_B11.g1_A029 Roots plus add... 105 7e-021
gb|DR686193.1|DR686193 EST1076271 Normalized pine embryo li... 105 7e-021
gb|DR742047.1|DR742047 RTCU1_1_H04.b1_A029 Roots plus added... 103 3e-020
gb|AA556631.1|AA556631 486 Loblolly pine C Pinus taeda cDNA... 101 1e-019
gb|DR020961.1|DR020961 STRS1_40_A08.g1_A034 Shoot tip pitch... 101 1e-019
gb|DT626087.1|DT626087 EST1158011 Sequencing ESTs from lobl... 101 1e-019
gb|BX249573.1|BX249573 BX249573 Pinus pinaster differenciat... 100 4e-019
gb|BQ107010.1|BQ107010 NXLV085_E04_F NXLV (Nsf Xylem Late w... 100 4e-019
gb|CX651235.1|CX651235 COLD1_51_C02.b1_A029 Root cold Pinus... 100 4e-019
gb|DN609458.1|DN609458 EST962508 Subtracted pine embryo lib... 100 4e-019
gb|DR020742.1|DR020742 STRS1_39_B01.b1_A034 Shoot tip pitch... 100 4e-019
gb|DR745811.1|DR745811 RTCU1_32_E05.g1_A029 Roots plus adde... 100 4e-019
gb|DT625045.1|DT625045 EST1159320 Sequencing ESTs from lobl... 100 4e-019
gb|DT627732.1|DT627732 EST1156481 Subtracted pine embryo li... 100 4e-019
gb|BM493758.1|BM493758 NXLV_067_B09_F NXLV (Nsf Xylem Late ... 98 2e-018
gb|CO201706.1|CO201706 RTCNT2_7_C11.g1_A029 Root control 2 ... 98 2e-018
gb|DN446070.1|DN446070 EST941869 Sequencing ESTs from loblo... 98 2e-018
gb|BG673847.1|BG673847 NXPV_075_H02_F NXPV (Nsf Xylem Plani... 96 7e-018
gb|CF477311.1|CF477311 RTWW3_7_E08.b1_A022 Well-watered lob... 96 7e-018
gb|BQ107402.1|BQ107402 NXLV091_C07_F NXLV (Nsf Xylem Late w... 94 3e-017
gb|DR020818.1|DR020818 STRS1_39_B01.g1_A034 Shoot tip pitch... 94 3e-017
gb|DR021454.1|DR021454 STRS1_44_F05.g1_A034 Shoot tip pitch... 94 3e-017
gb|BF777709.1|BF777709 NXSI_074_C06_F NXSI (Nsf Xylem Side ... 92 1e-016
gb|DR743298.1|DR743298 RTCU1_14_H11.g1_A029 Roots plus adde... 92 1e-016
gb|CF387511.1|CF387511 RTDR1_20_B03.b1_A015 Loblolly pine r... 90 4e-016
gb|AW010218.1|AW010218 ST03E02 Pine TriplEx shoot tip libra... 86 7e-015
gb|DN450896.1|DN450896 EST946695 Sequencing ESTs from loblo... 84 3e-014
gb|AW226288.1|AW226288 ST80F04 Pine TriplEx shoot tip libra... 82 1e-013
gb|AW870068.1|AW870068 NXNV_123_G02_F Nsf Xylem Normal wood... 82 1e-013
gb|BG319360.1|BG319360 NXPV_027_A11_F NXPV (Nsf Xylem Plani... 82 1e-013
gb|BQ107796.1|BQ107796 NXLV104_E11_F NXLV (Nsf Xylem Late w... 82 1e-013
gb|AW437852.1|AW437852 ST73A07 Pine TriplEx shoot tip libra... 80 4e-013
gb|BF169583.1|BF169583 NXCI_124_H07_F NXCI (Nsf Xylem Compr... 80 4e-013
gb|BM903059.1|BM903059 NXLV_078_H01_F NXLV (Nsf Xylem Late ... 80 4e-013
gb|CO414011.1|CO414011 EST844396 Sequencing ESTs from loblo... 80 4e-013
gb|BQ634037.1|BQ634037 NXRV065_A04_F NXRV (Nsf Xylem Root w... 74 3e-011
gb|BQ699032.1|BQ699032 NXRV118_E12_F NXRV (Nsf Xylem Root w... 74 3e-011
gb|CF665018.1|CF665018 RTCNT1_13_H04.b1_A029 Root control P... 74 3e-011
gb|CO411034.1|CO411034 EST841419 Sequencing ESTs from loblo... 74 3e-011
gb|CV138246.1|CV138246 EST849455 Sequencing ESTs from loblo... 74 3e-011
gb|DN447603.1|DN447603 EST943402 Sequencing ESTs from loblo... 74 3e-011
gb|DN450318.1|DN450318 EST946117 Sequencing ESTs from loblo... 74 3e-011
gb|DN458562.1|DN458562 EST954361 Sequencing ESTs from loblo... 74 3e-011
gb|DR161462.1|DR161462 RTFE1_12_A02.b1_A029 Roots minus iro... 74 3e-011
gb|CF390741.1|CF390741 RTDR2_17_H07.g1_A021 Loblolly pine r... 72 1e-010
gb|BM493768.1|BM493768 NXLV_067_C07_F NXLV (Nsf Xylem Late ... 70 4e-010
gb|BQ698700.1|BQ698700 NXPV_130_H08_F NXPV (Nsf Xylem Plani... 66 6e-009
gb|AW984916.1|AW984916 NXNV_131_A04_F Nsf Xylem Normal wood... 64 2e-008
gb|CD017218.1|CD017218 NXCI_097_D09_F NXCI (Nsf Xylem Compr... 64 2e-008
gb|BG318805.1|BG318805 NXPV_020_B01_F NXPV (Nsf Xylem Plani... 62 1e-007
gb|DR181201.1|DR181201 RTMNUT1_37_A10.g2_A029 Roots minus m... 62 1e-007
gb|BX248883.1|BX248883 BX248883 Pinus pinaster differenciat... 60 4e-007
gb|BF221406.1|BF221406 NXCI_165_D03_F NXCI (Nsf Xylem Compr... 58 2e-006
gb|BM367737.1|BM367737 NXLV_056_A02_F NXLV (Nsf Xylem Late ... 58 2e-006
gb|CO167982.1|CO167982 FLD1_72_B09.g1_A029 Root flooded Pin... 58 2e-006
gb|DR081326.1|DR081326 RTFEPL1_28_G12.g1_A029 Roots plus ad... 58 2e-006
gb|BM134093.1|BM134093 NXLV_016_D07_F NXLV (Nsf Xylem Late ... 56 6e-006
gb|CO363266.1|CO363266 RTK1_8_D12.g1_A029 Roots minus potas... 54 2e-005
gb|AI812449.1|AI812449 11C10 Pine Lambda Zap Xylem library ... 52 9e-005
gb|AI812493.1|AI812493 11G7 Pine Lambda Zap Xylem library P... 52 9e-005
gb|BE187274.1|BE187274 NXNV_76_G04_F Nsf Xylem Normal wood ... 52 9e-005
gb|BM493380.1|BM493380 NXLV_063_D05_F NXLV (Nsf Xylem Late ... 52 9e-005
gb|BQ697173.1|BQ697173 NXPV_050_D06_F NXPV (Nsf Xylem Plani... 52 9e-005
gb|DN629396.1|DN629396 EST980212 Subtracted pine embryo lib... 52 9e-005
gb|DN629718.1|DN629718 EST980534 Subtracted pine embryo lib... 52 9e-005
gb|CO163259.1|CO163259 FLD1_40_A12.g1_A029 Root flooded Pin... 48 0.001
gb|DR692209.1|DR692209 EST1082297 Normalized pine embryo li... 46 0.006
gb|AW754761.1|AW754761 PC07E10 Pine TriplEx pollen cone lib... 42 0.091
gb|CD018827.1|CD018827 NXLV_052_C10_F NXLV (Nsf Xylem Late ... 42 0.091
gb|CD019820.1|CD019820 NXLV115_D03_F NXLV (Nsf Xylem Late w... 42 0.091
gb|CD016411.1|CD016411 NXCI_043_E11_F NXCI (Nsf Xylem Compr... 40 0.36
>gb|CO368789.1|CO368789 RTK1_42_G08.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_42_G08_A029 5', mRNA sequence
Length = 817
Score = 274 bits (138), Expect = 1e-071
Identities = 631/794 (79%), Gaps = 1/794 (0%)
Strand = Plus / Minus
Query: 586 aaggaagctgaaattttggctgcacaggatgatggtggtggtgaagcattggagcgtgtt 645
|||||||||||| | | |||||||| |||||||| ||||| || ||| | || || |
Sbjct: 794 aaggaagctgaagctctagctgcacaagatgatggaggtggagaggcactagatcgatta 735
Query: 646 tatgagcgtctagatgcaatggatgctggaactgcagaaaagcgagctgctgaaatttta 705
|||||||||||||| | ||||||||| ||| |||||||||||||| |||||||| |||
Sbjct: 734 tatgagcgtctagaatccttggatgctgcaacagcagaaaagcgagcagctgaaatatta 675
Query: 706 tttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaagatttctctggaggt 765
||||| | |||||||| ||| ||||||||||||| || || | || |||||||| |||
Sbjct: 674 tttggcttaggttttgataaaaaaatgcaagcaaaaaagacaagtgacttctctggtggt 615
Query: 766 tggcgtatgaggattgctttagcaagagcactgtttatgaatccaacaatccttttgctt 825
||||||||| | || ||| | ||| |||| |||| |||||||| ||| | | || ||
Sbjct: 614 tggcgtatgcgaatagctctggcacgagcgttgttcatgaatcctacagttttgttacta 555
Query: 826 gatgagcccacaaaccatctagatcttgaggcttgtgtctggttggaagagacactgaag 885
||||| || ||||| ||||| |||||||| |||||||| ||| | || || | |||||
Sbjct: 554 gatgaacctacaaatcatcttgatcttgaagcttgtgtatggctcgaggaaatgctgaaa 495
Query: 886 aaatttgaccgcatacttgttgtcatatcacactcccaagattttctaaatggagtgtgt 945
|||||||| ||||| | ||||| |||||||| || ||||||||||| |||||| | |||
Sbjct: 494 aaatttgatcgcattttggttgtaatatcacattcgcaagattttctcaatggaatttgt 435
Query: 946 actaacattatccatatgcaaaacaagaagctcaagttatacaccggtaactacgatcag 1005
|||||||| || ||||||||||| || ||| | || || || || || || || ||||||
Sbjct: 434 actaacatcattcatatgcaaaataaaaagttgaaattgtatacgggaaattatgatcag 375
Query: 1006 tatgttcaaactcgctccgatcttgaagagaatcaaatgaagcagtacaaatgggagcag 1065
||||| ||||| | | |||||||| || || || ||||||||||||| ||||||||||
Sbjct: 374 tatgtacaaacaagaactgatcttgaggaaaaccagatgaagcagtacagatgggagcag 315
Query: 1066 gaacagattgcttcaatgaaggagtacattgctcgcttcggtcatggttctgcaaagctt 1125
|| ||||| || ||||||||||| || || ||| | || ||||||||||||||||| |||
Sbjct: 314 gagcagatagcgtcaatgaaggaatatatagctagatttggtcatggttctgcaaaactt 255
Query: 1126 gctcgtcaggctcagagcaaagagaaaactcttgcaaagatggagcgaggtggtctcacc 1185
||| | || || || || ||||| || || || ||||||||||| ||||||| || ||
Sbjct: 254 gctaggcaagcacaaagtaaagaaaagaccctggcaaagatggaaagaggtgggctaacg 195
Query: 1186 gagaaggttgttagggacagagttctagtgttcaggtttacagatgttggcaaacttcct 1245
|| || || || || || | ||| |||||||| | || || |||||||| || ||||||
Sbjct: 194 gaaaaagtggtcagagataaagtattagtgttccgtttcaccgatgttgggaagcttcct 135
Query: 1246 ccacctgtgctgcagtttgttgaagtcaagtttgggtatacaccagataatctcatatac 1305
|||||||| ||||||||||| ||||| | |||||||| || || || || || |||||
Sbjct: 134 ccacctgttctgcagtttgtggaagtagactttgggtacactcctgaaaaccttatatat 75
Query: 1306 aagagtcttgactttggagttgatcttgactctagaatcgcattggttggtcccaatggt 1365
|||| | | || |||||||| ||||| || || || || || ||||||||||| |||||
Sbjct: 74 aagaatatagattttggagtggatctggattcaaggatagc-ttggttggtccaaatgga 16
Query: 1366 gcagggaagagcac 1379
||||| ||||||||
Sbjct: 15 gcaggaaagagcac 2
>gb|CF477443.1|CF477443 RTWW3_7_E08.g1_A022 Well-watered loblolly pine roots WW3 Pinus taeda
cDNA clone RTWW3_7_E08_A022 5', mRNA sequence
Length = 693
Score = 250 bits (126), Expect = 2e-064
Identities = 501/626 (80%)
Strand = Plus / Plus
Query: 646 tatgagcgtctagatgcaatggatgctggaactgcagaaaagcgagctgctgaaatttta 705
|||||||||||||| | ||||||||| ||| |||||||||||||| |||||||| |||
Sbjct: 27 tatgagcgtctagaatccttggatgctgcaacagcagaaaagcgagcagctgaaatatta 86
Query: 706 tttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaagatttctctggaggt 765
||||| | |||||||| ||| ||||||||||||| || || | || |||||||| |||
Sbjct: 87 tttggcttaggttttgataaaaaaatgcaagcaaaaaagacaagtgacttctctggtggt 146
Query: 766 tggcgtatgaggattgctttagcaagagcactgtttatgaatccaacaatccttttgctt 825
||||||||| | || ||| | ||| |||| |||| |||||||| ||| | | || ||
Sbjct: 147 tggcgtatgcgaatagctctggcacgagcgttgttcatgaatcctacagttttgttacta 206
Query: 826 gatgagcccacaaaccatctagatcttgaggcttgtgtctggttggaagagacactgaag 885
||||| || ||||| ||||| |||||||| |||||||| ||| | || || | |||||
Sbjct: 207 gatgaacctacaaatcatcttgatcttgaagcttgtgtatggctcgaggaaatgctgaaa 266
Query: 886 aaatttgaccgcatacttgttgtcatatcacactcccaagattttctaaatggagtgtgt 945
|||||||| ||||| | ||||| |||||||| || ||||||||||| |||||| | |||
Sbjct: 267 aaatttgatcgcattttggttgtaatatcacattcgcaagattttctcaatggaatttgt 326
Query: 946 actaacattatccatatgcaaaacaagaagctcaagttatacaccggtaactacgatcag 1005
|||||||| || ||||||||||| || ||| | || || || || || || || ||||||
Sbjct: 327 actaacatcattcatatgcaaaataaaaagttgaaattgtatacgggaaattatgatcag 386
Query: 1006 tatgttcaaactcgctccgatcttgaagagaatcaaatgaagcagtacaaatgggagcag 1065
||||| ||||| | | |||||||| || || || ||||||||||||| ||||||||||
Sbjct: 387 tatgtacaaacaagaactgatcttgaggaaaaccagatgaagcagtacagatgggagcag 446
Query: 1066 gaacagattgcttcaatgaaggagtacattgctcgcttcggtcatggttctgcaaagctt 1125
|| ||||| || ||||||||||| || || ||| | || ||||||||||||||||| |||
Sbjct: 447 gagcagatagcgtcaatgaaggaatatatagctagatttggtcatggttctgcaaaactt 506
Query: 1126 gctcgtcaggctcagagcaaagagaaaactcttgcaaagatggagcgaggtggtctcacc 1185
||| | || || || || ||||| || || || ||||||||||| ||||||| || ||
Sbjct: 507 gctaggcaagcacaaagtaaagaaaagaccctggcaaagatggaaagaggtgggctaacg 566
Query: 1186 gagaaggttgttagggacagagttctagtgttcaggtttacagatgttggcaaacttcct 1245
|| || || || || || | ||| |||||||| | || || |||||||| || ||||||
Sbjct: 567 gaaaaagtggtcagagataaagtattagtgttccgtttcaccgatgttgggaagcttcct 626
Query: 1246 ccacctgtgctgcagtttgttgaagt 1271
|||||||| ||||||||||| |||||
Sbjct: 627 ccacctgttctgcagtttgtggaagt 652
>gb|DR070329.1|DR070329 RTDK1_12_D09.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_12_D09_A029 5', mRNA sequence
Length = 691
Score = 232 bits (117), Expect = 5e-059
Identities = 474/593 (79%)
Strand = Plus / Plus
Query: 679 gcagaaaagcgagctgctgaaattttatttggtctgggttttgacaaacaaatgcaagca 738
|||||||||||||| |||||||| |||||||| | |||||||| ||| |||||||||||
Sbjct: 21 gcagaaaagcgagcagctgaaatattatttggcttaggttttgataaaaaaatgcaagca 80
Query: 739 aagaaaactaaagatttctctggaggttggcgtatgaggattgctttagcaagagcactg 798
|| || || | || |||||||| |||||||||||| | || ||| | ||| |||| ||
Sbjct: 81 aaaaagacaagtgacttctctggtggttggcgtatgcgaatagctctggcacgagcgttg 140
Query: 799 tttatgaatccaacaatccttttgcttgatgagcccacaaaccatctagatcttgaggct 858
|| |||||||| ||| | | || || ||||| || ||||| ||||| |||||||| |||
Sbjct: 141 ttcatgaatcctacagttttgttactagatgaacctacaaatcatcttgatcttgaagct 200
Query: 859 tgtgtctggttggaagagacactgaagaaatttgaccgcatacttgttgtcatatcacac 918
||||| ||| | || || | ||||| |||||||| ||||| | ||||| ||||||||
Sbjct: 201 tgtgtatggctcgaggaaatgctgaaaaaatttgatcgcattttggttgtaatatcacat 260
Query: 919 tcccaagattttctaaatggagtgtgtactaacattatccatatgcaaaacaagaagctc 978
|| ||||||||||| |||||| | ||||||||||| || ||||||||||| || ||| |
Sbjct: 261 tcgcaagattttctcaatggaatttgtactaacatcattcatatgcaaaataaaaagttg 320
Query: 979 aagttatacaccggtaactacgatcagtatgttcaaactcgctccgatcttgaagagaat 1038
|| || || || || || || ||||||||||| ||||| | | |||||||| || ||
Sbjct: 321 aaattgtatacgggaaattatgatcagtatgtacaaacaagaactgatcttgaggaaaac 380
Query: 1039 caaatgaagcagtacaaatgggagcaggaacagattgcttcaatgaaggagtacattgct 1098
|| ||||||||||||| |||||||||||| ||||| || ||||||||||| || || |||
Sbjct: 381 cagatgaagcagtacagatgggagcaggagcagatagcgtcaatgaaggaatatatagct 440
Query: 1099 cgcttcggtcatggttctgcaaagcttgctcgtcaggctcagagcaaagagaaaactctt 1158
| || ||||||||||||||||| |||||| | || || || || ||||| || || ||
Sbjct: 441 agatttggtcatggttctgcaaaacttgctaggcaagcacaaagtaaagaaaagaccctg 500
Query: 1159 gcaaagatggagcgaggtggtctcaccgagaaggttgttagggacagagttctagtgttc 1218
||||||||||| ||||||| || || || || || || || || | ||| ||||||||
Sbjct: 501 gcaaagatggaaagaggtgggctaacggaaaaagtggtcagagataaagtattagtgttc 560
Query: 1219 aggtttacagatgttggcaaacttcctccacctgtgctgcagtttgttgaagt 1271
| || || |||||||| || |||||||||||||| ||||||||||| |||||
Sbjct: 561 cgtttcaccgatgttgggaagcttcctccacctgttctgcagtttgtggaagt 613
>gb|DR181543.1|DR181543 RTMNUT1_39_C02.g2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_39_C02_A029 5', mRNA sequence
Length = 790
Score = 232 bits (117), Expect = 5e-059
Identities = 474/593 (79%)
Strand = Plus / Plus
Query: 586 aaggaagctgaaattttggctgcacaggatgatggtggtggtgaagcattggagcgtgtt 645
|||||||||||| | | |||||||| |||||||| ||||| || ||| | || || |
Sbjct: 177 aaggaagctgaagctctagctgcacaagatgatggaggtggagaggcactagatcgatta 236
Query: 646 tatgagcgtctagatgcaatggatgctggaactgcagaaaagcgagctgctgaaatttta 705
|||||||||||||| | ||||||||| ||| |||||||||||||| |||||||| |||
Sbjct: 237 tatgagcgtctagaatccttggatgctgcaacagcagaaaagcgagcagctgaaatatta 296
Query: 706 tttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaagatttctctggaggt 765
||||| | |||||||| ||| ||||||||||||| || || | || |||||||| |||
Sbjct: 297 tttggcttaggttttgataaaaaaatgcaagcaaaaaagacaagtgacttctctggtggt 356
Query: 766 tggcgtatgaggattgctttagcaagagcactgtttatgaatccaacaatccttttgctt 825
||||||||| | || ||| | ||| |||| |||| |||||||| ||| | | || ||
Sbjct: 357 tggcgtatgcgaatagctctggcacgagcgttgttcatgaatcctacagttttgttacta 416
Query: 826 gatgagcccacaaaccatctagatcttgaggcttgtgtctggttggaagagacactgaag 885
||||| || ||||| ||||| |||||||| |||||||| ||| | || || | |||||
Sbjct: 417 gatgaacctacaaatcatcttgatcttgaagcttgtgtatggctcgaggaaatgctgaaa 476
Query: 886 aaatttgaccgcatacttgttgtcatatcacactcccaagattttctaaatggagtgtgt 945
|||||||| ||||| | ||||| |||||||| || ||||||||||| |||||| | |||
Sbjct: 477 aaatttgatcgcattttggttgtaatatcacattcgcaagattttctcaatggaatttgt 536
Query: 946 actaacattatccatatgcaaaacaagaagctcaagttatacaccggtaactacgatcag 1005
|||||||| || ||||||||||| || ||| | || || || || || || || ||||||
Sbjct: 537 actaacatcattcatatgcaaaataaaaagttgaaattgtatacgggaaattatgatcag 596
Query: 1006 tatgttcaaactcgctccgatcttgaagagaatcaaatgaagcagtacaaatgggagcag 1065
||||| ||||| | | |||||||| || || || ||||||||||||| ||||||||||
Sbjct: 597 tatgtacaaacaagaactgatcttgaggaaaaccagatgaagcagtacagatgggagcag 656
Query: 1066 gaacagattgcttcaatgaaggagtacattgctcgcttcggtcatggttctgcaaagctt 1125
|| ||||| || ||||||||||| || || ||| | || ||||||||||||||||| |||
Sbjct: 657 gagcagatagcgtcaatgaaggaatatatagctagatttggtcatggttctgcaaaactt 716
Query: 1126 gctcgtcaggctcagagcaaagagaaaactcttgcaaagatggagcgaggtgg 1178
||| | || || || || ||||| || || || ||||||||||| |||||||
Sbjct: 717 gctaggcaagcacaaagtaaagaaaagaccctggcaaagatggaaagaggtgg 769
>gb|DR683762.1|DR683762 EST1073838 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAK96 3' end, mRNA sequence
Length = 798
Score = 218 bits (110), Expect = 7e-055
Identities = 416/518 (80%)
Strand = Plus / Plus
Query: 604 gctgcacaggatgatggtggtggtgaagcattggagcgtgtttatgagcgtctagatgca 663
|||||||| |||||||| ||||| || ||| | || || | |||||||||||||| |
Sbjct: 279 gctgcacaagatgatggaggtggagaggcactagatcgattatatgagcgtctagaatcc 338
Query: 664 atggatgctggaactgcagaaaagcgagctgctgaaattttatttggtctgggttttgac 723
||||||||| ||| |||||||||||||| |||||||| |||||||| | ||||||||
Sbjct: 339 ttggatgctgcaacagcagaaaagcgagcagctgaaatattatttggcttaggttttgat 398
Query: 724 aaacaaatgcaagcaaagaaaactaaagatttctctggaggttggcgtatgaggattgct 783
||| ||||||||||||| || || | || |||||||| |||||||||||| | || |||
Sbjct: 399 aaaaaaatgcaagcaaaaaagacaagtgacttctctggtggttggcgtatgcgaatagct 458
Query: 784 ttagcaagagcactgtttatgaatccaacaatccttttgcttgatgagcccacaaaccat 843
| ||| |||| |||| |||||||| ||| | | || || ||||| || ||||| |||
Sbjct: 459 ctggcacgagcgttgttcatgaatcctacagttttgttactagatgaacctacaaatcat 518
Query: 844 ctagatcttgaggcttgtgtctggttggaagagacactgaagaaatttgaccgcatactt 903
|| |||||||| |||||||| ||| | || || | ||||| |||||||| ||||| |
Sbjct: 519 cttgatcttgaagcttgtgtatggctcgaggaaatgctgaaaaaatttgatcgcattttg 578
Query: 904 gttgtcatatcacactcccaagattttctaaatggagtgtgtactaacattatccatatg 963
||||| |||||||| || ||||||||||| |||||| | ||||||||||| || ||||||
Sbjct: 579 gttgtaatatcacattcgcaagattttctcaatggaatttgtactaacatcattcatatg 638
Query: 964 caaaacaagaagctcaagttatacaccggtaactacgatcagtatgttcaaactcgctcc 1023
||||| || ||| | || || || || || || || ||||||||||| ||||| | |
Sbjct: 639 caaaataaaaagttgaaattgtatacgggaaattatgatcagtatgtacaaacaagaact 698
Query: 1024 gatcttgaagagaatcaaatgaagcagtacaaatgggagcaggaacagattgcttcaatg 1083
|||||||| || || || ||||||||||||| |||||||||||| ||||| || ||||||
Sbjct: 699 gatcttgaggaaaaccagatgaagcagtacagatgggagcaggagcagatagcgtcaatg 758
Query: 1084 aaggagtacattgctcgcttcggtcatggttctgcaaa 1121
||||| || || ||| | || |||||||||||||||||
Sbjct: 759 aaggaatatatagctagatttggtcatggttctgcaaa 796
>gb|CF479058.1|CF479058 RTWW3_21_D06.g1_A022 Well-watered loblolly pine roots WW3 Pinus taeda
cDNA clone RTWW3_21_D06_A022 5', mRNA sequence
Length = 743
Score = 202 bits (102), Expect = 4e-050
Identities = 441/554 (79%)
Strand = Plus / Plus
Query: 826 gatgagcccacaaaccatctagatcttgaggcttgtgtctggttggaagagacactgaag 885
||||| || ||||| ||||| |||||||| |||||||| ||| | || || | |||||
Sbjct: 31 gatgaacctacaaatcatcttgatcttgaagcttgtgtatggctcgaggaaatgctgaaa 90
Query: 886 aaatttgaccgcatacttgttgtcatatcacactcccaagattttctaaatggagtgtgt 945
|||||||| ||||| | ||||| |||||||| || ||||||||||| |||||| | |||
Sbjct: 91 aaatttgatcgcattttggttgtaatatcacattcgcaagattttctcaatggaatttgt 150
Query: 946 actaacattatccatatgcaaaacaagaagctcaagttatacaccggtaactacgatcag 1005
|||||||| || ||||||||||| || ||| | || || || || || || || ||||||
Sbjct: 151 actaacatcattcatatgcaaaataaaaagttgaaattgtatacgggaaattatgatcag 210
Query: 1006 tatgttcaaactcgctccgatcttgaagagaatcaaatgaagcagtacaaatgggagcag 1065
||||| ||||| | | |||||||| || || || ||||||||||||| ||||||||||
Sbjct: 211 tatgtacaaacaagaactgatcttgaggaaaaccagatgaagcagtacagatgggagcag 270
Query: 1066 gaacagattgcttcaatgaaggagtacattgctcgcttcggtcatggttctgcaaagctt 1125
|| ||||| || ||||||||||| || || ||| | || ||||||||||||||||| |||
Sbjct: 271 gagcagatagcgtcaatgaaggaatatatagctagatttggtcatggttctgcaaaactt 330
Query: 1126 gctcgtcaggctcagagcaaagagaaaactcttgcaaagatggagcgaggtggtctcacc 1185
||| | || || || || ||||| || || || ||||||||||| ||||||| || ||
Sbjct: 331 gctaggcaagcacaaagtaaagaaaagaccctggcaaagatggaaagaggtgggctaacg 390
Query: 1186 gagaaggttgttagggacagagttctagtgttcaggtttacagatgttggcaaacttcct 1245
|| || || || || || | ||| |||||||| | || || |||||||| || ||||||
Sbjct: 391 gaaaaagtggtcagagataaagtattagtgttccgtttcaccgatgttgggaagcttcct 450
Query: 1246 ccacctgtgctgcagtttgttgaagtcaagtttgggtatacaccagataatctcatatac 1305
|||||||| ||||||||||| ||||| | |||||||| || || || || || |||||
Sbjct: 451 ccacctgttctgcagtttgtggaagtagactttgggtacactcctgaaaaccttatatat 510
Query: 1306 aagagtcttgactttggagttgatcttgactctagaatcgcattggttggtcccaatggt 1365
|||| | | || |||||||| ||||| || || || || || ||||||||||| |||||
Sbjct: 511 aagaatatagattttggagtggatctggattcaaggatagctttggttggtccaaatgga 570
Query: 1366 gcagggaagagcac 1379
||||| ||||||||
Sbjct: 571 gcaggaaagagcac 584
>gb|DR689976.1|DR689976 EST1080062 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACP67 3' end, mRNA sequence
Length = 858
Score = 202 bits (102), Expect = 4e-050
Identities = 441/554 (79%)
Strand = Plus / Plus
Query: 826 gatgagcccacaaaccatctagatcttgaggcttgtgtctggttggaagagacactgaag 885
||||| || ||||| ||||| |||||||| |||||||| ||| | || || | |||||
Sbjct: 8 gatgaacctacaaatcatcttgatcttgaagcttgtgtatggctcgaggaaatgctgaaa 67
Query: 886 aaatttgaccgcatacttgttgtcatatcacactcccaagattttctaaatggagtgtgt 945
|||||||| ||||| | ||||| |||||||| || ||||||||||| |||||| | |||
Sbjct: 68 aaatttgatcgcattttggttgtaatatcacattcgcaagattttctcaatggaatttgt 127
Query: 946 actaacattatccatatgcaaaacaagaagctcaagttatacaccggtaactacgatcag 1005
|||||||| || ||||||||||| || ||| | || || || || || || || ||||||
Sbjct: 128 actaacatcattcatatgcaaaataaaaagttgaaattgtatacgggaaattatgatcag 187
Query: 1006 tatgttcaaactcgctccgatcttgaagagaatcaaatgaagcagtacaaatgggagcag 1065
||||| ||||| | | |||||||| || || || ||||||||||||| ||||||||||
Sbjct: 188 tatgtacaaacaagaactgatcttgaggaaaaccagatgaagcagtacagatgggagcag 247
Query: 1066 gaacagattgcttcaatgaaggagtacattgctcgcttcggtcatggttctgcaaagctt 1125
|| ||||| || ||||||||||| || || ||| | || ||||||||||||||||| |||
Sbjct: 248 gagcagatagcgtcaatgaaggaatatatagctagatttggtcatggttctgcaaaactt 307
Query: 1126 gctcgtcaggctcagagcaaagagaaaactcttgcaaagatggagcgaggtggtctcacc 1185
||| | || || || || ||||| || || || ||||||||||| ||||||| || ||
Sbjct: 308 gctaggcaagcacaaagtaaagaaaagaccctggcaaagatggaaagaggtgggctaacg 367
Query: 1186 gagaaggttgttagggacagagttctagtgttcaggtttacagatgttggcaaacttcct 1245
|| || || || || || | ||| |||||||| | || || |||||||| || ||||||
Sbjct: 368 gaaaaagtggtcagagataaagtattagtgttccgtttcaccgatgttgggaagcttcct 427
Query: 1246 ccacctgtgctgcagtttgttgaagtcaagtttgggtatacaccagataatctcatatac 1305
|||||||| ||||||||||| ||||| | |||||||| || || || || || |||||
Sbjct: 428 ccacctgttctgcagtttgtggaagtagactttgggtacactcctgaaaaccttatatat 487
Query: 1306 aagagtcttgactttggagttgatcttgactctagaatcgcattggttggtcccaatggt 1365
|||| | | || |||||||| ||||| || || || || || ||||||||||| |||||
Sbjct: 488 aagaatatagattttggagtggatctggattcaaggatagctttggttggtccaaatgga 547
Query: 1366 gcagggaagagcac 1379
||||| ||||||||
Sbjct: 548 gcaggaaagagcac 561
>gb|DR742125.1|DR742125 RTCU1_1_H04.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_1_H04_A029 5', mRNA sequence
Length = 789
Score = 202 bits (102), Expect = 4e-050
Identities = 441/554 (79%)
Strand = Plus / Plus
Query: 826 gatgagcccacaaaccatctagatcttgaggcttgtgtctggttggaagagacactgaag 885
||||| || ||||| ||||| |||||||| |||||||| ||| | || || | |||||
Sbjct: 77 gatgaacctacaaatcatcttgatcttgaagcttgtgtatggctcgaggaaatgctgaaa 136
Query: 886 aaatttgaccgcatacttgttgtcatatcacactcccaagattttctaaatggagtgtgt 945
|||||||| ||||| | ||||| |||||||| || ||||||||||| |||||| | |||
Sbjct: 137 aaatttgatcgcattttggttgtaatatcacattcgcaagattttctcaatggaatttgt 196
Query: 946 actaacattatccatatgcaaaacaagaagctcaagttatacaccggtaactacgatcag 1005
|||||||| || ||||||||||| || ||| | || || || || || || || ||||||
Sbjct: 197 actaacatcattcatatgcaaaataaaaagttgaaattgtatacgggaaattatgatcag 256
Query: 1006 tatgttcaaactcgctccgatcttgaagagaatcaaatgaagcagtacaaatgggagcag 1065
||||| ||||| | | |||||||| || || || ||||||||||||| ||||||||||
Sbjct: 257 tatgtacaaacaagaactgatcttgaggaaaaccagatgaagcagtacagatgggagcag 316
Query: 1066 gaacagattgcttcaatgaaggagtacattgctcgcttcggtcatggttctgcaaagctt 1125
|| ||||| || ||||||||||| || || ||| | || ||||||||||||||||| |||
Sbjct: 317 gagcagatagcgtcaatgaaggaatatatagctagatttggtcatggttctgcaaaactt 376
Query: 1126 gctcgtcaggctcagagcaaagagaaaactcttgcaaagatggagcgaggtggtctcacc 1185
||| | || || || || ||||| || || || ||||||||||| ||||||| || ||
Sbjct: 377 gctaggcaagcacaaagtaaagaaaagaccctggcaaagatggaaagaggtgggctaacg 436
Query: 1186 gagaaggttgttagggacagagttctagtgttcaggtttacagatgttggcaaacttcct 1245
|| || || || || || | ||| |||||||| | || || |||||||| || ||||||
Sbjct: 437 gaaaaagtggtcagagataaagtattagtgttccgtttcaccgatgttgggaagcttcct 496
Query: 1246 ccacctgtgctgcagtttgttgaagtcaagtttgggtatacaccagataatctcatatac 1305
|||||||| ||||||||||| ||||| | |||||||| || || || || || |||||
Sbjct: 497 ccacctgttctgcagtttgtggaagtagactttgggtacactcctgaaaaccttatatat 556
Query: 1306 aagagtcttgactttggagttgatcttgactctagaatcgcattggttggtcccaatggt 1365
|||| | | || |||||||| ||||| || || || || || ||||||||||| |||||
Sbjct: 557 aagaatatagattttggagtggatctggattcaaggatagctttggttggtccaaatgga 616
Query: 1366 gcagggaagagcac 1379
||||| ||||||||
Sbjct: 617 gcaggaaagagcac 630
>gb|DR019238.1|DR019238 STRS1_28_D12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_28_D12_A034 5', mRNA sequence
Length = 791
Score = 190 bits (96), Expect = 2e-046
Identities = 399/500 (79%)
Strand = Plus / Plus
Query: 880 ctgaagaaatttgaccgcatacttgttgtcatatcacactcccaagattttctaaatgga 939
||||| |||||||| ||||| | ||||| |||||||| || ||||||||||| ||||||
Sbjct: 42 ctgaaaaaatttgatcgcattttggttgtaatatcacattcgcaagattttctcaatgga 101
Query: 940 gtgtgtactaacattatccatatgcaaaacaagaagctcaagttatacaccggtaactac 999
| ||||||||||| || ||||||||||| || ||| | || || || || || || ||
Sbjct: 102 atttgtactaacatcattcatatgcaaaataaaaagttgaaattgtatacgggaaattat 161
Query: 1000 gatcagtatgttcaaactcgctccgatcttgaagagaatcaaatgaagcagtacaaatgg 1059
||||||||||| ||||| | | |||||||| || || || ||||||||||||| ||||
Sbjct: 162 gatcagtatgtacaaacaagaactgatcttgaggaaaaccagatgaagcagtacagatgg 221
Query: 1060 gagcaggaacagattgcttcaatgaaggagtacattgctcgcttcggtcatggttctgca 1119
|||||||| ||||| || ||||||||||| || || ||| | || |||||||||||||||
Sbjct: 222 gagcaggagcagatagcgtcaatgaaggaatatatagctagatttggtcatggttctgca 281
Query: 1120 aagcttgctcgtcaggctcagagcaaagagaaaactcttgcaaagatggagcgaggtggt 1179
|| |||||| | || || || || ||||| || || || ||||||||||| |||||||
Sbjct: 282 aaacttgctaggcaagcacaaagtaaagaaaagaccctggcaaagatggaaagaggtggg 341
Query: 1180 ctcaccgagaaggttgttagggacagagttctagtgttcaggtttacagatgttggcaaa 1239
|| || || || || || || || | ||| |||||||| | || || |||||||| ||
Sbjct: 342 ctaacggaaaaagtggtcagagataaagtattagtgttccgtttcaccgatgttgggaag 401
Query: 1240 cttcctccacctgtgctgcagtttgttgaagtcaagtttgggtatacaccagataatctc 1299
|||||||||||||| ||||||||||| ||||| | |||||||| || || || || ||
Sbjct: 402 cttcctccacctgttctgcagtttgtggaagtagactttgggtacactcctgaaaacctt 461
Query: 1300 atatacaagagtcttgactttggagttgatcttgactctagaatcgcattggttggtccc 1359
||||| |||| | | || |||||||| ||||| || || || || || |||||||||||
Sbjct: 462 atatataagaatatagattttggagtggatctggattcaaggatagctttggttggtcca 521
Query: 1360 aatggtgcagggaagagcac 1379
||||| ||||| ||||||||
Sbjct: 522 aatggagcaggaaagagcac 541
>gb|CO366763.1|CO366763 RTK1_29_H10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_29_H10_A029 5', mRNA sequence
Length = 733
Score = 182 bits (92), Expect = 4e-044
Identities = 380/476 (79%)
Strand = Plus / Plus
Query: 904 gttgtcatatcacactcccaagattttctaaatggagtgtgtactaacattatccatatg 963
||||| |||||||| || ||||||||||| |||||| | ||||||||||| || ||||||
Sbjct: 5 gttgtaatatcacattcgcaagattttctcaatggaatttgtactaacatcattcatatg 64
Query: 964 caaaacaagaagctcaagttatacaccggtaactacgatcagtatgttcaaactcgctcc 1023
||||| || ||| | || || || || || || || ||||||||||| ||||| | |
Sbjct: 65 caaaataaaaagttgaaattgtatacgggaaattatgatcagtatgtacaaacaagaact 124
Query: 1024 gatcttgaagagaatcaaatgaagcagtacaaatgggagcaggaacagattgcttcaatg 1083
|||||||| || || || ||||||||||||| |||||||||||| ||||| || ||||||
Sbjct: 125 gatcttgaggaaaaccagatgaagcagtacagatgggagcaggagcagatagcgtcaatg 184
Query: 1084 aaggagtacattgctcgcttcggtcatggttctgcaaagcttgctcgtcaggctcagagc 1143
||||| || || ||| | || ||||||||||||||||| |||||| | || || || ||
Sbjct: 185 aaggaatatatagctagatttggtcatggttctgcaaaacttgctaggcaagcacaaagt 244
Query: 1144 aaagagaaaactcttgcaaagatggagcgaggtggtctcaccgagaaggttgttagggac 1203
||||| || || || ||||||||||| ||||||| || || || || || || || ||
Sbjct: 245 aaagaaaagaccctggcaaagatggaaagaggtgggctaacggaaaaagtggtcagagat 304
Query: 1204 agagttctagtgttcaggtttacagatgttggcaaacttcctccacctgtgctgcagttt 1263
| ||| |||||||| | || || |||||||| || |||||||||||||| |||||||||
Sbjct: 305 aaagtattagtgttccgtttcaccgatgttgggaagcttcctccacctgttctgcagttt 364
Query: 1264 gttgaagtcaagtttgggtatacaccagataatctcatatacaagagtcttgactttgga 1323
|| ||||| | |||||||| || || || || || ||||| |||| | | || ||||||
Sbjct: 365 gtggaagtagactttgggtacactcctgaaaaccttatatataagaatatagattttgga 424
Query: 1324 gttgatcttgactctagaatcgcattggttggtcccaatggtgcagggaagagcac 1379
|| ||||| || || || || || ||||||||||| ||||| ||||| ||||||||
Sbjct: 425 gtggatctggattcaaggatagctttggttggtccaaatggagcaggaaagagcac 480
>gb|DR053644.1|DR053644 RTCA1_12_A10.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_12_A10_A029 5', mRNA sequence
Length = 717
Score = 182 bits (92), Expect = 4e-044
Identities = 380/476 (79%)
Strand = Plus / Plus
Query: 904 gttgtcatatcacactcccaagattttctaaatggagtgtgtactaacattatccatatg 963
||||| |||||||| || ||||||||||| |||||| | ||||||||||| || ||||||
Sbjct: 16 gttgtaatatcacattcgcaagattttctcaatggaatttgtactaacatcattcatatg 75
Query: 964 caaaacaagaagctcaagttatacaccggtaactacgatcagtatgttcaaactcgctcc 1023
||||| || ||| | || || || || || || || ||||||||||| ||||| | |
Sbjct: 76 caaaataaaaagttgaaattgtatacgggaaattatgatcagtatgtacaaacaagaact 135
Query: 1024 gatcttgaagagaatcaaatgaagcagtacaaatgggagcaggaacagattgcttcaatg 1083
|||||||| || || || ||||||||||||| |||||||||||| ||||| || ||||||
Sbjct: 136 gatcttgaggaaaaccagatgaagcagtacagatgggagcaggagcagatagcgtcaatg 195
Query: 1084 aaggagtacattgctcgcttcggtcatggttctgcaaagcttgctcgtcaggctcagagc 1143
||||| || || ||| | || ||||||||||||||||| |||||| | || || || ||
Sbjct: 196 aaggaatatatagctagatttggtcatggttctgcaaaacttgctaggcaagcacaaagt 255
Query: 1144 aaagagaaaactcttgcaaagatggagcgaggtggtctcaccgagaaggttgttagggac 1203
||||| || || || ||||||||||| ||||||| || || || || || || || ||
Sbjct: 256 aaagaaaagaccctggcaaagatggaaagaggtgggctaacggaaaaagtggtcagagat 315
Query: 1204 agagttctagtgttcaggtttacagatgttggcaaacttcctccacctgtgctgcagttt 1263
| ||| |||||||| | || || |||||||| || |||||||||||||| |||||||||
Sbjct: 316 aaagtattagtgttccgtttcaccgatgttgggaagcttcctccacctgttctgcagttt 375
Query: 1264 gttgaagtcaagtttgggtatacaccagataatctcatatacaagagtcttgactttgga 1323
|| ||||| | |||||||| || || || || || ||||| |||| | | || ||||||
Sbjct: 376 gtggaagtagactttgggtacactcctgaaaaccttatatataagaatatagattttgga 435
Query: 1324 gttgatcttgactctagaatcgcattggttggtcccaatggtgcagggaagagcac 1379
|| ||||| || || || || || ||||||||||| ||||| ||||| ||||||||
Sbjct: 436 gtggatctggattcaaggatagctttggttggtccaaatggagcaggaaagagcac 491
>gb|DR160064.1|DR160064 RTFE1_3_B06.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_3_B06_A029 5', mRNA sequence
Length = 771
Score = 182 bits (92), Expect = 4e-044
Identities = 398/500 (79%)
Strand = Plus / Plus
Query: 880 ctgaagaaatttgaccgcatacttgttgtcatatcacactcccaagattttctaaatgga 939
||||| |||||||| ||||| | ||||| ||||||| || ||||||||||| ||||||
Sbjct: 44 ctgaaaaaatttgatcgcattttggttgtattatcacattcgcaagattttctcaatgga 103
Query: 940 gtgtgtactaacattatccatatgcaaaacaagaagctcaagttatacaccggtaactac 999
| ||||||||||| || ||||||||||| || ||| | || || || || || || ||
Sbjct: 104 atttgtactaacatcattcatatgcaaaataaaaagttgaaattgtatacgggaaattat 163
Query: 1000 gatcagtatgttcaaactcgctccgatcttgaagagaatcaaatgaagcagtacaaatgg 1059
||||||||||| ||||| | | |||||||| || || || ||||||||||||| ||||
Sbjct: 164 gatcagtatgtacaaacaagaactgatcttgaggaaaaccagatgaagcagtacagatgg 223
Query: 1060 gagcaggaacagattgcttcaatgaaggagtacattgctcgcttcggtcatggttctgca 1119
|||||||| ||||| || ||||||||||| || || ||| | || |||||||||||||||
Sbjct: 224 gagcaggagcagatagcgtcaatgaaggaatatatagctagatttggtcatggttctgca 283
Query: 1120 aagcttgctcgtcaggctcagagcaaagagaaaactcttgcaaagatggagcgaggtggt 1179
|| |||||| | || || || || ||||| || || || ||||||||||| |||||||
Sbjct: 284 aaacttgctaggcaagcacaaagtaaagaaaagaccctggcaaagatggaaagaggtggg 343
Query: 1180 ctcaccgagaaggttgttagggacagagttctagtgttcaggtttacagatgttggcaaa 1239
|| || || || || || || || | ||| |||||||| | || || |||||||| ||
Sbjct: 344 ctaacggaaaaagtggtcagagataaagtattagtgttccgtttcaccgatgttgggaag 403
Query: 1240 cttcctccacctgtgctgcagtttgttgaagtcaagtttgggtatacaccagataatctc 1299
|||||||||||||| ||||||||||| ||||| | |||||||| || || || || ||
Sbjct: 404 cttcctccacctgttctgcagtttgtggaagtagactttgggtacactcctgaaaacctt 463
Query: 1300 atatacaagagtcttgactttggagttgatcttgactctagaatcgcattggttggtccc 1359
||||| |||| | | || |||||||| ||||| || || || || || |||||||||||
Sbjct: 464 atatataagaatatagattttggagtggatctggattcaaggatagctttggttggtcca 523
Query: 1360 aatggtgcagggaagagcac 1379
||||| ||||| ||||||||
Sbjct: 524 aatggagcaggaaagagcac 543
>gb|DR054577.1|DR054577 RTCA1_18_E09.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_E09_A029 3', mRNA sequence
Length = 689
Score = 178 bits (90), Expect = 6e-043
Identities = 375/470 (79%)
Strand = Plus / Minus
Query: 910 atatcacactcccaagattttctaaatggagtgtgtactaacattatccatatgcaaaac 969
|||||||| || ||||||||||| |||||| | ||||||||||| || |||||||||||
Sbjct: 669 atatcacattcgcaagattttctcaatggaatttgtactaacatcattcatatgcaaaat 610
Query: 970 aagaagctcaagttatacaccggtaactacgatcagtatgttcaaactcgctccgatctt 1029
|| ||| | || || || || || || || ||||||||||| ||||| | | ||||||
Sbjct: 609 aaaaagttgaaattgtatacgggaaattatgatcagtatgtacaaacaagaactgatctt 550
Query: 1030 gaagagaatcaaatgaagcagtacaaatgggagcaggaacagattgcttcaatgaaggag 1089
|| || || || ||||||||||||| |||||||||||| ||||| || |||||||||||
Sbjct: 549 gaggaaaaccagatgaagcagtacagatgggagcaggagcagatagcgtcaatgaaggaa 490
Query: 1090 tacattgctcgcttcggtcatggttctgcaaagcttgctcgtcaggctcagagcaaagag 1149
|| || ||| | || ||||||||||||||||| |||||| | || || || || |||||
Sbjct: 489 tatatagctagatttggtcatggttctgcaaaacttgctaggcaagcacaaagtaaagaa 430
Query: 1150 aaaactcttgcaaagatggagcgaggtggtctcaccgagaaggttgttagggacagagtt 1209
|| || || ||||||||||| ||||||| || || || || || || || || | |||
Sbjct: 429 aagaccctggcaaagatggaaagaggtgggctaacggaaaaagtggtcagagataaagta 370
Query: 1210 ctagtgttcaggtttacagatgttggcaaacttcctccacctgtgctgcagtttgttgaa 1269
|||||||| | || || |||||||| || |||||||||||||| ||||||||||| |||
Sbjct: 369 ttagtgttccgtttcaccgatgttgggaagcttcctccacctgttctgcagtttgtggaa 310
Query: 1270 gtcaagtttgggtatacaccagataatctcatatacaagagtcttgactttggagttgat 1329
|| | |||||||| || || || || || ||||| |||| | | || |||||||| |||
Sbjct: 309 gtagactttgggtacactcctgaaaaccttatatataagaatatagattttggagtggat 250
Query: 1330 cttgactctagaatcgcattggttggtcccaatggtgcagggaagagcac 1379
|| || || || || || ||||||||||| ||||| ||||| ||||||||
Sbjct: 249 ctggattcaaggatagctttggttggtccaaatggagcaggaaagagcac 200
>gb|DR091921.1|DR091921 RTAL1_24_H02.g1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_24_H02_A029 5', mRNA sequence
Length = 847
Score = 178 bits (90), Expect = 6e-043
Identities = 375/470 (79%)
Strand = Plus / Plus
Query: 910 atatcacactcccaagattttctaaatggagtgtgtactaacattatccatatgcaaaac 969
|||||||| || ||||||||||| |||||| | ||||||||||| || |||||||||||
Sbjct: 5 atatcacattcgcaagattttctcaatggaatttgtactaacatcattcatatgcaaaat 64
Query: 970 aagaagctcaagttatacaccggtaactacgatcagtatgttcaaactcgctccgatctt 1029
|| ||| | || || || || || || || ||||||||||| ||||| | | ||||||
Sbjct: 65 aaaaagttgaaattgtatacgggaaattatgatcagtatgtacaaacaagaactgatctt 124
Query: 1030 gaagagaatcaaatgaagcagtacaaatgggagcaggaacagattgcttcaatgaaggag 1089
|| || || || ||||||||||||| |||||||||||| ||||| || |||||||||||
Sbjct: 125 gaggaaaaccagatgaagcagtacagatgggagcaggagcagatagcgtcaatgaaggaa 184
Query: 1090 tacattgctcgcttcggtcatggttctgcaaagcttgctcgtcaggctcagagcaaagag 1149
|| || ||| | || ||||||||||||||||| |||||| | || || || || |||||
Sbjct: 185 tatatagctagatttggtcatggttctgcaaaacttgctaggcaagcacaaagtaaagaa 244
Query: 1150 aaaactcttgcaaagatggagcgaggtggtctcaccgagaaggttgttagggacagagtt 1209
|| || || ||||||||||| ||||||| || || || || || || || || | |||
Sbjct: 245 aagaccctggcaaagatggaaagaggtgggctaacggaaaaagtggtcagagataaagta 304
Query: 1210 ctagtgttcaggtttacagatgttggcaaacttcctccacctgtgctgcagtttgttgaa 1269
|||||||| | || || |||||||| || |||||||||||||| ||||||||||| |||
Sbjct: 305 ttagtgttccgtttcaccgatgttgggaagcttcctccacctgttctgcagtttgtggaa 364
Query: 1270 gtcaagtttgggtatacaccagataatctcatatacaagagtcttgactttggagttgat 1329
|| | |||||||| || || || || || ||||| |||| | | || |||||||| |||
Sbjct: 365 gtagactttgggtacactcctgaaaaccttatatataagaatatagattttggagtggat 424
Query: 1330 cttgactctagaatcgcattggttggtcccaatggtgcagggaagagcac 1379
|| || || || || || ||||||||||| ||||| ||||| ||||||||
Sbjct: 425 ctggattcaaggatagctttggttggtccaaatggagcaggaaagagcac 474
Score = 60.0 bits (30), Expect = 4e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 1679 tgctcgatgagccgacaaatcatttggacattgagaccattgactccctggcggaggcac 1738
|||| ||||| || || |||||| | |||||||| |||||||| || || || |||||||
Sbjct: 774 tgctagatgaaccaactaatcatcttgacattgaaaccattgattcactcgcagaggcac 833
Query: 1739 tgaatgagtgggat 1752
||||||||||||||
Sbjct: 834 tgaatgagtgggat 847
>gb|DR387362.1|DR387362 RTHG1_21_F04.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_21_F04_A029 3', mRNA sequence
Length = 744
Score = 178 bits (90), Expect = 6e-043
Identities = 375/470 (79%)
Strand = Plus / Minus
Query: 910 atatcacactcccaagattttctaaatggagtgtgtactaacattatccatatgcaaaac 969
|||||||| || ||||||||||| |||||| | ||||||||||| || |||||||||||
Sbjct: 717 atatcacattcgcaagattttctcaatggaatttgtactaacatcattcatatgcaaaat 658
Query: 970 aagaagctcaagttatacaccggtaactacgatcagtatgttcaaactcgctccgatctt 1029
|| ||| | || || || || || || || ||||||||||| ||||| | | ||||||
Sbjct: 657 aaaaagttgaaattgtatacgggaaattatgatcagtatgtacaaacaagaactgatctt 598
Query: 1030 gaagagaatcaaatgaagcagtacaaatgggagcaggaacagattgcttcaatgaaggag 1089
|| || || || ||||||||||||| |||||||||||| ||||| || |||||||||||
Sbjct: 597 gaggaaaaccagatgaagcagtacagatgggagcaggagcagatagcgtcaatgaaggaa 538
Query: 1090 tacattgctcgcttcggtcatggttctgcaaagcttgctcgtcaggctcagagcaaagag 1149
|| || ||| | || ||||||||||||||||| |||||| | || || || || |||||
Sbjct: 537 tatatagctagatttggtcatggttctgcaaaacttgctaggcaagcacaaagtaaagaa 478
Query: 1150 aaaactcttgcaaagatggagcgaggtggtctcaccgagaaggttgttagggacagagtt 1209
|| || || ||||||||||| ||||||| || || || || || || || || | |||
Sbjct: 477 aagaccctggcaaagatggaaagaggtgggctaacggaaaaagtggtcagagataaagta 418
Query: 1210 ctagtgttcaggtttacagatgttggcaaacttcctccacctgtgctgcagtttgttgaa 1269
|||||||| | || || |||||||| || |||||||||||||| ||||||||||| |||
Sbjct: 417 ttagtgttccgtttcaccgatgttgggaagcttcctccacctgttctgcagtttgtggaa 358
Query: 1270 gtcaagtttgggtatacaccagataatctcatatacaagagtcttgactttggagttgat 1329
|| | |||||||| || || || || || ||||| |||| | | || |||||||| |||
Sbjct: 357 gtagactttgggtacactcctgaaaaccttatatataagaatatagattttggagtggat 298
Query: 1330 cttgactctagaatcgcattggttggtcccaatggtgcagggaagagcac 1379
|| || || || || || ||||||||||| ||||| ||||| ||||||||
Sbjct: 297 ctggattcaaggatagctttggttggtccaaatggagcaggaaagagcac 248
>gb|CX713497.1|CX713497 RTPQ1_9_G11.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_9_G11_A032 5', mRNA sequence
Length = 505
Score = 176 bits (89), Expect = 2e-042
Identities = 386/485 (79%)
Strand = Plus / Plus
Query: 886 aaatttgaccgcatacttgttgtcatatcacactcccaagattttctaaatggagtgtgt 945
|||||||| ||||| | ||||| |||||||| || ||||||||||| |||||| | |||
Sbjct: 19 aaatttgatcgcattttggttgtaatatcacattcgcaagattttctcaatggaatttgt 78
Query: 946 actaacattatccatatgcaaaacaagaagctcaagttatacaccggtaactacgatcag 1005
|||||||| || ||||||||||| || ||| | || || || || || || || ||||||
Sbjct: 79 actaacatcattcatatgcaaaataaaaagttgaaattgtatacgggaaattatgatcag 138
Query: 1006 tatgttcaaactcgctccgatcttgaagagaatcaaatgaagcagtacaaatgggagcag 1065
||||| ||||| | | |||||||| || || || ||||||||||||| ||||||||||
Sbjct: 139 tatgtacaaacaagaactgatcttgaggaaaaccagatgaagcagtacagatgggagcag 198
Query: 1066 gaacagattgcttcaatgaaggagtacattgctcgcttcggtcatggttctgcaaagctt 1125
|| ||||| || ||||||||||| || || ||| | || ||||||||||||||||| |||
Sbjct: 199 gagcagatagcgtcaatgaaggaatatatagctagatttggtcatggttctgcaaaactt 258
Query: 1126 gctcgtcaggctcagagcaaagagaaaactcttgcaaagatggagcgaggtggtctcacc 1185
||| | || || || || ||||| || || || ||||||||||| ||||||| || ||
Sbjct: 259 gctaggcaagcacaaagtaaagaaaagaccctggcaaagatggaaagaggtgggctaacg 318
Query: 1186 gagaaggttgttagggacagagttctagtgttcaggtttacagatgttggcaaacttcct 1245
|| || || || || || | ||| |||||||| | || || |||||||| || ||||||
Sbjct: 319 gaaaaagtggtcagagataaagtattagtgttccgtttcaccgatgttgggaagcttcct 378
Query: 1246 ccacctgtgctgcagtttgttgaagtcaagtttgggtatacaccagataatctcatatac 1305
|||||||| ||||||||||| ||||| | |||||||| || || || || || |||||
Sbjct: 379 ccacctgttctgcagtttgtggaagtagactttgggtacactcctgaaaaccttatatat 438
Query: 1306 aagagtcttgactttggagttgatcttgactctagaatcgcattggttggtcccaatggt 1365
|||| | | || |||||||| ||||| || || || || || ||||||||||| |||||
Sbjct: 439 aagaatatagattttggagtggatctggattcaaggatagctttggttggtccaaatgga 498
Query: 1366 gcagg 1370
|||||
Sbjct: 499 gcagg 503
>gb|DR013932.1|DR013932 HEAT1_22_H12.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_22_H12_A029 3', mRNA sequence
Length = 583
Score = 176 bits (89), Expect = 2e-042
Identities = 380/477 (79%)
Strand = Plus / Minus
Query: 586 aaggaagctgaaattttggctgcacaggatgatggtggtggtgaagcattggagcgtgtt 645
|||||||||||| | | |||||||| |||||||| ||||| || ||| | || || |
Sbjct: 477 aaggaagctgaagctctagctgcacaagatgatggaggtggagaggcactagatcgatta 418
Query: 646 tatgagcgtctagatgcaatggatgctggaactgcagaaaagcgagctgctgaaatttta 705
|||||||||||||| | ||||||||| ||| |||||||||||||| |||||||| |||
Sbjct: 417 tatgagcgtctagaatccttggatgctgcaacagcagaaaagcgagcagctgaaatatta 358
Query: 706 tttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaagatttctctggaggt 765
||||| | |||||||| ||| ||||||||||||| || || | || |||||||| |||
Sbjct: 357 tttggcttaggttttgataaaaaaatgcaagcaaaaaagacaagtgacttctctggtggt 298
Query: 766 tggcgtatgaggattgctttagcaagagcactgtttatgaatccaacaatccttttgctt 825
||||||||| | || ||| | ||| |||| |||| |||||||| ||| | | || ||
Sbjct: 297 tggcgtatgcgaatagctctggcacgagcgttgttcatgaatcctacagttttgttacta 238
Query: 826 gatgagcccacaaaccatctagatcttgaggcttgtgtctggttggaagagacactgaag 885
||||| || ||||| ||||| |||||||| |||||||| ||| | || || | |||||
Sbjct: 237 gatgaacctacaaatcatcttgatcttgaagcttgtgtatggctcgaggaaatgctgaaa 178
Query: 886 aaatttgaccgcatacttgttgtcatatcacactcccaagattttctaaatggagtgtgt 945
|||||||| ||||| | ||||| |||||||| || ||||||||||| |||||| | |||
Sbjct: 177 aaatttgatcgcattttggttgtaatatcacattcgcaagattttctcaatggaatttgt 118
Query: 946 actaacattatccatatgcaaaacaagaagctcaagttatacaccggtaactacgatcag 1005
|||||||| || ||||||||||| || ||| | || || || || || || || ||||||
Sbjct: 117 actaacatcattcatatgcaaaataaaaagttgaaattgtatacgggaaattatgatcag 58
Query: 1006 tatgttcaaactcgctccgatcttgaagagaatcaaatgaagcagtacaaatgggag 1062
||||| ||||| | | |||||||| || || || ||||||||||||| |||||||
Sbjct: 57 tatgtacaaacaagaactgatcttgaggaaaaccagatgaagcagtacagatgggag 1
>gb|CV147137.1|CV147137 EST858346 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA
clone RPIE410 5' end, mRNA sequence
Length = 888
Score = 165 bits (83), Expect = 9e-039
Identities = 344/431 (79%)
Strand = Plus / Plus
Query: 586 aaggaagctgaaattttggctgcacaggatgatggtggtggtgaagcattggagcgtgtt 645
|||||||||||| | | |||||||| |||||||| ||||| || ||| | || || |
Sbjct: 427 aaggaagctgaagctctagctgcacaagatgatggaggtggagaggcactagatcgatta 486
Query: 646 tatgagcgtctagatgcaatggatgctggaactgcagaaaagcgagctgctgaaatttta 705
|||||||||||||| | ||||||||| ||| |||||||||||||| |||||||| |||
Sbjct: 487 tatgagcgtctagaatccttggatgctgcaacagcagaaaagcgagcagctgaaatatta 546
Query: 706 tttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaagatttctctggaggt 765
||||| | |||||||| ||| ||||||||||||| || || | || |||||||| |||
Sbjct: 547 tttggcttaggttttgataaaaaaatgcaagcaaaaaagacaagtgacttctctggtggt 606
Query: 766 tggcgtatgaggattgctttagcaagagcactgtttatgaatccaacaatccttttgctt 825
||||||||| | || ||| | ||| |||| |||| |||||||| ||| | | || ||
Sbjct: 607 tggcgtatgcgaatagctctggcacgagcgttgttcatgaatcctacagttttgttacta 666
Query: 826 gatgagcccacaaaccatctagatcttgaggcttgtgtctggttggaagagacactgaag 885
||||| || ||||| ||||| |||||||| |||||||| ||| | || || | |||||
Sbjct: 667 gatgaacctacaaatcatcttgatcttgaagcttgtgtatggctcgaggaaatgctgaaa 726
Query: 886 aaatttgaccgcatacttgttgtcatatcacactcccaagattttctaaatggagtgtgt 945
|||||||| ||||| | ||||| |||||||| || ||||||||||| |||||| | |||
Sbjct: 727 aaatttgatcgcattttggttgtaatatcacattcgcaagattttctcaatggaatttgt 786
Query: 946 actaacattatccatatgcaaaacaagaagctcaagttatacaccggtaactacgatcag 1005
|||||||| || ||||||||||| || ||| | || || || || || || || ||||||
Sbjct: 787 actaacatcattcatatgcaaaataaaaagttgaaattgtatacgggaaattatgatcag 846
Query: 1006 tatgttcaaac 1016
||||| |||||
Sbjct: 847 tatgtacaaac 857
>gb|DR388367.1|DR388367 RTHG1_27_G05.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_27_G05_A029 5', mRNA sequence
Length = 750
Score = 165 bits (83), Expect = 9e-039
Identities = 308/383 (80%)
Strand = Plus / Plus
Query: 586 aaggaagctgaaattttggctgcacaggatgatggtggtggtgaagcattggagcgtgtt 645
|||||||||||| | | |||||||| |||||||| ||||| || ||| | || || |
Sbjct: 361 aaggaagctgaagctctagctgcacaagatgatggaggtggagaggcactagatcgatta 420
Query: 646 tatgagcgtctagatgcaatggatgctggaactgcagaaaagcgagctgctgaaatttta 705
|||||||||||||| | ||||||||| ||| |||||||||||||| |||||||| |||
Sbjct: 421 tatgagcgtctagaatccttggatgctgcaacagcagaaaagcgagcagctgaaatatta 480
Query: 706 tttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaagatttctctggaggt 765
||||| | |||||||| ||| ||||||||||||| || || | || |||||||| |||
Sbjct: 481 tttggcttaggttttgataaaaaaatgcaagcaaaaaagacaagtgacttctctggtggt 540
Query: 766 tggcgtatgaggattgctttagcaagagcactgtttatgaatccaacaatccttttgctt 825
||||||||| | || ||| | ||| |||| |||| |||||||| ||| | | || ||
Sbjct: 541 tggcgtatgcgaatagctctggcacgagcgttgttcatgaatcctacagttttgttacta 600
Query: 826 gatgagcccacaaaccatctagatcttgaggcttgtgtctggttggaagagacactgaag 885
||||| || ||||| ||||| |||||||| |||||||| ||| | || || | |||||
Sbjct: 601 gatgaacctacaaatcatcttgatcttgaagcttgtgtatggctcgaggaaatgctgaaa 660
Query: 886 aaatttgaccgcatacttgttgtcatatcacactcccaagattttctaaatggagtgtgt 945
|||||||| ||||| | ||||| |||||||| || ||||||||||| |||||| | |||
Sbjct: 661 aaatttgatcgcattttggttgtaatatcacattcgcaagattttctcaatggaatttgt 720
Query: 946 actaacattatccatatgcaaaa 968
|||||||| || |||||||||||
Sbjct: 721 actaacatcattcatatgcaaaa 743
>gb|CX651317.1|CX651317 COLD1_51_C02.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_51_C02_A029 5', mRNA sequence
Length = 739
Score = 157 bits (79), Expect = 2e-036
Identities = 343/431 (79%)
Strand = Plus / Plus
Query: 586 aaggaagctgaaattttggctgcacaggatgatggtggtggtgaagcattggagcgtgtt 645
|||||||||||| | | |||||||| |||||||| ||||| || ||| | || || |
Sbjct: 288 aaggaagctgaagctcttgctgcacaagatgatggaggtggagaggcactagatcgatta 347
Query: 646 tatgagcgtctagatgcaatggatgctggaactgcagaaaagcgagctgctgaaatttta 705
|||||||||||||| | ||||||||| ||| |||||||||||||| |||||||| |||
Sbjct: 348 tatgagcgtctagaatccttggatgctgcaacagcagaaaagcgagcagctgaaatatta 407
Query: 706 tttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaagatttctctggaggt 765
||||| | |||||||| ||| ||||||||||||| || || | || |||||||| |||
Sbjct: 408 tttggcttaggttttgataaaaaaatgcaagcaaaaaagacaagtgacttctctggtggt 467
Query: 766 tggcgtatgaggattgctttagcaagagcactgtttatgaatccaacaatccttttgctt 825
||||||||| | || ||| | ||| |||| |||| |||||||| ||| | | || ||
Sbjct: 468 tggcgtatgcgaatagctctggcacgagcgttgttcatgaatcctacagttttgttacta 527
Query: 826 gatgagcccacaaaccatctagatcttgaggcttgtgtctggttggaagagacactgaag 885
||||| || ||||| ||||| |||||||| || ||||| ||| | || || | |||||
Sbjct: 528 gatgaacctacaaatcatcttgatcttgaagcctgtgtatggctcgaggaaatgctgaaa 587
Query: 886 aaatttgaccgcatacttgttgtcatatcacactcccaagattttctaaatggagtgtgt 945
|||||||| ||||| | ||||| |||||||| || ||||||||||| |||||| | |||
Sbjct: 588 aaatttgatcgcattttggttgtaatatcacattcgcaagattttctcaatggaatttgt 647
Query: 946 actaacattatccatatgcaaaacaagaagctcaagttatacaccggtaactacgatcag 1005
|||||||| || ||||||||||| || ||| | || || || || || || || ||||||
Sbjct: 648 actaacatcattcatatgcaaaataaaaagttgaaattgtatacgggaaattatgatcag 707
Query: 1006 tatgttcaaac 1016
||||| |||||
Sbjct: 708 tatgtacaaac 718
>gb|BE187282.1|BE187282 NXNV_162_A06_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_162_A06 5' similar to Arabidopsis thaliana sequence
At5g60790 ABC transporter homolog PnATH - like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 583
Score = 151 bits (76), Expect = 1e-034
Identities = 277/344 (80%)
Strand = Plus / Plus
Query: 826 gatgagcccacaaaccatctagatcttgaggcttgtgtctggttggaagagacactgaag 885
||||| || ||||| ||||| |||||||| |||||||| ||| | || || | |||||
Sbjct: 35 gatgaacctacaaatcatcttgatcttgaagcttgtgtatggctcgaggaaatgctgaaa 94
Query: 886 aaatttgaccgcatacttgttgtcatatcacactcccaagattttctaaatggagtgtgt 945
|||||||| ||||| | ||||| |||||||| || ||||||||||| |||||| | |||
Sbjct: 95 aaatttgatcgcattttggttgtaatatcacattcgcaagattttctcaatggaatttgt 154
Query: 946 actaacattatccatatgcaaaacaagaagctcaagttatacaccggtaactacgatcag 1005
|||||||| || ||||||||||| || ||| | || || || || || || || ||||||
Sbjct: 155 actaacatcattcatatgcaaaataaaaagttgaaattgtatacgggaaattatgatcag 214
Query: 1006 tatgttcaaactcgctccgatcttgaagagaatcaaatgaagcagtacaaatgggagcag 1065
||||| ||||| | | |||||||| || || || ||||||||||||| ||||||||||
Sbjct: 215 tatgtacaaacaagaactgatcttgaggaaaaccagatgaagcagtacagatgggagcag 274
Query: 1066 gaacagattgcttcaatgaaggagtacattgctcgcttcggtcatggttctgcaaagctt 1125
|| ||||| || ||||||||||| || || ||| | || ||||||||||||||||| |||
Sbjct: 275 gagcagatagcgtcaatgaaggaatatatagctagatttggtcatggttctgcaaaactt 334
Query: 1126 gctcgtcaggctcagagcaaagagaaaactcttgcaaagatgga 1169
||| | || || || || ||||| || || || |||||||||||
Sbjct: 335 gctaggcaagcacaaagtaaagaaaagaccctggcaaagatgga 378
>gb|BG673792.1|BG673792 NXPV_075_B05_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_075_B05 5' similar to Arabidopsis
thaliana sequence At5g60790 ABC transporter homolog PnATH
- like see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 425
Score = 147 bits (74), Expect = 2e-033
Identities = 239/294 (81%)
Strand = Plus / Plus
Query: 835 acaaaccatctagatcttgaggcttgtgtctggttggaagagacactgaagaaatttgac 894
||||| ||||| |||||||| |||||||| ||| | || || | ||||| ||||||||
Sbjct: 35 acaaatcatcttgatcttgaagcttgtgtatggctcgaggaaatgctgaaaaaatttgat 94
Query: 895 cgcatacttgttgtcatatcacactcccaagattttctaaatggagtgtgtactaacatt 954
||||| | ||||| |||||||| || ||||||||||| |||||| | |||||||||||
Sbjct: 95 cgcattttggttgtaatatcacattcgcaagattttctcaatggaatttgtactaacatc 154
Query: 955 atccatatgcaaaacaagaagctcaagttatacaccggtaactacgatcagtatgttcaa 1014
|| ||||||||||| || ||| | || || || || || || || ||||||||||| |||
Sbjct: 155 attcatatgcaaaataaaaagttgaaattgtatacgggaaattatgatcagtatgtacaa 214
Query: 1015 actcgctccgatcttgaagagaatcaaatgaagcagtacaaatgggagcaggaacagatt 1074
|| | | |||||||| || || || ||||||||||||| |||||||||||| |||||
Sbjct: 215 acaagaactgatcttgaggaaaaccagatgaagcagtacagatgggagcaggagcagata 274
Query: 1075 gcttcaatgaaggagtacattgctcgcttcggtcatggttctgcaaagcttgct 1128
|| ||||||||||| || || ||| | || ||||||||||||||||| ||||||
Sbjct: 275 gcgtcaatgaaggaatatatagctagatttggtcatggttctgcaaaacttgct 328
>gb|BQ697846.1|BQ697846 NXPV_061_E12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_061_E12 5' similar to Arabidopsis
thaliana sequence At5g60790 ABC transporter homolog PnATH
- like see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 510
Score = 147 bits (74), Expect = 2e-033
Identities = 281/350 (80%)
Strand = Plus / Plus
Query: 922 caagattttctaaatggagtgtgtactaacattatccatatgcaaaacaagaagctcaag 981
||||||||||| |||||| | ||||||||||| || ||||||||||| || ||| | ||
Sbjct: 2 caagattttctcaatggaatttgtactaacatcattcatatgcaaaataaaaagttgaaa 61
Query: 982 ttatacaccggtaactacgatcagtatgttcaaactcgctccgatcttgaagagaatcaa 1041
|| || || || || || ||||||||||| ||||| | | |||||||| || || ||
Sbjct: 62 ttgtatacgggaaattatgatcagtatgtacaaacaagaactgatcttgaggaaaaccag 121
Query: 1042 atgaagcagtacaaatgggagcaggaacagattgcttcaatgaaggagtacattgctcgc 1101
||||||||||||| |||||||||||| ||||| || ||||||||||| || || ||| |
Sbjct: 122 atgaagcagtacagatgggagcaggagcagatagcgtcaatgaaggaatatatagctaga 181
Query: 1102 ttcggtcatggttctgcaaagcttgctcgtcaggctcagagcaaagagaaaactcttgca 1161
|| ||||||||||||||||| |||||| | || || || || ||||| || || || |||
Sbjct: 182 tttggtcatggttctgcaaaacttgctaggcaagcacaaagtaaagaaaagaccctggca 241
Query: 1162 aagatggagcgaggtggtctcaccgagaaggttgttagggacagagttctagtgttcagg 1221
|||||||| ||||||| || || || || || || || || | ||| |||||||| |
Sbjct: 242 aagatggaaagaggtgggctaacggaaaaagtggtcagagataaagtattagtgttccgt 301
Query: 1222 tttacagatgttggcaaacttcctccacctgtgctgcagtttgttgaagt 1271
|| || |||||||| || |||||||||||||| ||||||||||| |||||
Sbjct: 302 ttcaccgatgttgggaagcttcctccacctgttctgcagtttgtggaagt 351
>gb|BM157547.1|BM157547 NXLV_020_H09_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_020_H09 5' similar to Arabidopsis thaliana
sequence At5g60790 ABC transporter homolog PnATH - like
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 700
Score = 145 bits (73), Expect = 8e-033
Identities = 346/437 (79%)
Strand = Plus / Plus
Query: 943 tgtactaacattatccatatgcaaaacaagaagctcaagttatacaccggtaactacgat 1002
||||||||||| || ||||||||||| || ||| | || || || || || || || |||
Sbjct: 24 tgtactaacatcattcatatgcaaaataaaaagttgaaattgtatacgggaaattatgat 83
Query: 1003 cagtatgttcaaactcgctccgatcttgaagagaatcaaatgaagcagtacaaatgggag 1062
|||||||| ||||| | | |||||||| || || || ||||||||||||| | |||||
Sbjct: 84 cagtatgtacaaacaagaactgatcttgaggaaaaccagatgaagcagtacagacgggag 143
Query: 1063 caggaacagattgcttcaatgaaggagtacattgctcgcttcggtcatggttctgcaaag 1122
||||| ||||| || ||||||||||| || || ||| | || |||||||||||||||||
Sbjct: 144 caggagcagatagcgtcaatgaaggaatatatagctagatttggtcatggttctgcaaaa 203
Query: 1123 cttgctcgtcaggctcagagcaaagagaaaactcttgcaaagatggagcgaggtggtctc 1182
|||||| | || || || || ||||| || || || ||||||||||| ||||||| ||
Sbjct: 204 cttgctaggcaagcacaaagtaaagaaaagaccctggcaaagatggaaagaggtgggcta 263
Query: 1183 accgagaaggttgttagggacagagttctagtgttcaggtttacagatgttggcaaactt 1242
|| || || || || || || | ||| |||||||| | || || |||||||| || |||
Sbjct: 264 acggaaaaagtggtcagagataaagtattagtgttccgtttcaccgatgttgggaagctt 323
Query: 1243 cctccacctgtgctgcagtttgttgaagtcaagtttgggtatacaccagataatctcata 1302
||||||||||| ||||||||||| ||||| | |||||||| || || || || || |||
Sbjct: 324 cctccacctgttctgcagtttgtggaagtagactttgggtacactcctgaaaaccttata 383
Query: 1303 tacaagagtcttgactttggagttgatcttgactctagaatcgcattggttggtcccaat 1362
|| |||| | | || |||||||| ||||| || || || || || ||||||||||| |||
Sbjct: 384 tataagaatatagattttggagtggatctggattcaaggatagctttggttggtccaaat 443
Query: 1363 ggtgcagggaagagcac 1379
|| ||||| ||||||||
Sbjct: 444 ggagcaggaaagagcac 460
>gb|CF402471.1|CF402471 RTWW1_17_F10.g1_A015 Well-watered loblolly pine roots WW1 Pinus taeda
cDNA clone RTWW1_17_F10_A015 5', mRNA sequence
Length = 796
Score = 143 bits (72), Expect = 3e-032
Identities = 285/356 (80%)
Strand = Plus / Plus
Query: 1024 gatcttgaagagaatcaaatgaagcagtacaaatgggagcaggaacagattgcttcaatg 1083
|||||||| || || || ||||||||||||| |||||||||||| ||||| || ||||||
Sbjct: 47 gatcttgaggaaaaccagatgaagcagtacagatgggagcaggagcagatagcgtcaatg 106
Query: 1084 aaggagtacattgctcgcttcggtcatggttctgcaaagcttgctcgtcaggctcagagc 1143
||||| || || ||| | || ||||||||||||||||| |||||| | || || || ||
Sbjct: 107 aaggaatatatagctagatttggtcatggttctgcaaaacttgctaggcaagcacaaagt 166
Query: 1144 aaagagaaaactcttgcaaagatggagcgaggtggtctcaccgagaaggttgttagggac 1203
||||| || || || ||||||||||| ||||||| || || || || || || || ||
Sbjct: 167 aaagaaaagaccctggcaaagatggaaagaggtgggctaacggaaaaagtggtcagagat 226
Query: 1204 agagttctagtgttcaggtttacagatgttggcaaacttcctccacctgtgctgcagttt 1263
| ||| |||||||| | || || |||||||| || |||||||||||||| |||||||||
Sbjct: 227 aaagtattagtgttccgtttcaccgatgttgggaagcttcctccacctgttctgcagttt 286
Query: 1264 gttgaagtcaagtttgggtatacaccagataatctcatatacaagagtcttgactttgga 1323
|| ||||| | |||||||| || || || || || ||||| |||| | | || ||||||
Sbjct: 287 gtggaagtagactttgggtacactcctgaaaaccttatatataagaatatagattttgga 346
Query: 1324 gttgatcttgactctagaatcgcattggttggtcccaatggtgcagggaagagcac 1379
|| ||||| || || || || || ||||||||||| ||||| ||||| ||||||||
Sbjct: 347 gtggatctggattcaaggatagctttggttggtccaaatggagcaggaaagagcac 402
Score = 63.9 bits (32), Expect = 2e-008
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 1679 tgctcgatgagccgacaaatcatttggacattgagaccattgactccctggcggaggcac 1738
|||| ||||| || || |||||| | |||||||| |||||||| || || || |||||||
Sbjct: 702 tgctagatgaaccaactaatcatcttgacattgaaaccattgattcactcgcagaggcac 761
Query: 1739 tgaatgagtgggatgg 1754
||||||||||||||||
Sbjct: 762 tgaatgagtgggatgg 777
>gb|DR057039.1|DR057039 RTNIT1_2_D08.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_2_D08_A029 3', mRNA sequence
Length = 767
Score = 143 bits (72), Expect = 3e-032
Identities = 303/380 (79%)
Strand = Plus / Minus
Query: 1000 gatcagtatgttcaaactcgctccgatcttgaagagaatcaaatgaagcagtacaaatgg 1059
||||||||||| ||||| | | |||||||| || || || ||||||||||||| ||||
Sbjct: 724 gatcagtatgtacaaacaagaactgatcttgaggaaaaccagatgaagcagtacagatgg 665
Query: 1060 gagcaggaacagattgcttcaatgaaggagtacattgctcgcttcggtcatggttctgca 1119
|||||||| ||||| || ||||||||||| || || ||| | || |||||||||||||||
Sbjct: 664 gagcaggagcagatagcgtcaatgaaggaatatatagctagatttggtcatggttctgca 605
Query: 1120 aagcttgctcgtcaggctcagagcaaagagaaaactcttgcaaagatggagcgaggtggt 1179
|| |||||| | || || || || ||||| || || || ||||||||||| |||||||
Sbjct: 604 aaacttgctaggcaagcacaaagtaaagaaaagaccctggcaaagatggaaagaggtggg 545
Query: 1180 ctcaccgagaaggttgttagggacagagttctagtgttcaggtttacagatgttggcaaa 1239
|| || || || || || || || | ||| |||||||| | || || |||||||| ||
Sbjct: 544 ctaacggaaaaagtggtcagagataaagtattagtgttccgtttcaccgatgttgggaag 485
Query: 1240 cttcctccacctgtgctgcagtttgttgaagtcaagtttgggtatacaccagataatctc 1299
|||||||||||||| ||||||||||| ||||| | |||||||| || || || || ||
Sbjct: 484 cttcctccacctgttctgcagtttgtggaagtagactttgggtacactcctgaaaacctt 425
Query: 1300 atatacaagagtcttgactttggagttgatcttgactctagaatcgcattggttggtccc 1359
||||| |||| | | || |||||||| ||||| || || || || || |||||||||||
Sbjct: 424 atatataagaatatagattttggagtggatctggattcaaggatagctttggttggtcca 365
Query: 1360 aatggtgcagggaagagcac 1379
||||| ||||| ||||||||
Sbjct: 364 aatggagcaggaaagagcac 345
>gb|DR384615.1|DR384615 RTHG1_3_A03.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_3_A03_A029 5', mRNA sequence
Length = 782
Score = 143 bits (72), Expect = 3e-032
Identities = 303/380 (79%)
Strand = Plus / Plus
Query: 1000 gatcagtatgttcaaactcgctccgatcttgaagagaatcaaatgaagcagtacaaatgg 1059
||||||||||| ||||| | | |||||||| || || || ||||||||||||| ||||
Sbjct: 9 gatcagtatgtacaaacaagaactgatcttgaggaaaaccagatgaagcagtacagatgg 68
Query: 1060 gagcaggaacagattgcttcaatgaaggagtacattgctcgcttcggtcatggttctgca 1119
|||||||| ||||| || ||||||||||| || || ||| | || |||||||||||||||
Sbjct: 69 gagcaggagcagatagcgtcaatgaaggaatatatagctagatttggtcatggttctgca 128
Query: 1120 aagcttgctcgtcaggctcagagcaaagagaaaactcttgcaaagatggagcgaggtggt 1179
|| |||||| | || || || || ||||| || || || ||||||||||| |||||||
Sbjct: 129 aaacttgctaggcaagcacaaagtaaagaaaagaccctggcaaagatggaaagaggtggg 188
Query: 1180 ctcaccgagaaggttgttagggacagagttctagtgttcaggtttacagatgttggcaaa 1239
|| || || || || || || || | ||| |||||||| | || || |||||||| ||
Sbjct: 189 ctaacggaaaaagtggtcagagataaagtattagtgttccgtttcaccgatgttgggaag 248
Query: 1240 cttcctccacctgtgctgcagtttgttgaagtcaagtttgggtatacaccagataatctc 1299
|||||||||||||| ||||||||||| ||||| | |||||||| || || || || ||
Sbjct: 249 cttcctccacctgttctgcagtttgtggaagtagactttgggtacactcctgaaaacctt 308
Query: 1300 atatacaagagtcttgactttggagttgatcttgactctagaatcgcattggttggtccc 1359
||||| |||| | | || |||||||| ||||| || || || || || |||||||||||
Sbjct: 309 atatataagaatatagattttggagtggatctggattcaaggatagctttggttggtcca 368
Query: 1360 aatggtgcagggaagagcac 1379
||||| ||||| ||||||||
Sbjct: 369 aatggagcaggaaagagcac 388
Score = 63.9 bits (32), Expect = 2e-008
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 1679 tgctcgatgagccgacaaatcatttggacattgagaccattgactccctggcggaggcac 1738
|||| ||||| || || |||||| | |||||||| |||||||| || || || |||||||
Sbjct: 688 tgctagatgaaccaactaatcatcttgacattgaaaccattgattcactcgcagaggcac 747
Query: 1739 tgaatgagtgggatgg 1754
||||||||||||||||
Sbjct: 748 tgaatgagtgggatgg 763
>gb|AI812847.1|AI812847 20G10 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 505
Score = 139 bits (70), Expect = 5e-031
Identities = 283/354 (79%)
Strand = Plus / Plus
Query: 586 aaggaagctgaaattttggctgcacaggatgatggtggtggtgaagcattggagcgtgtt 645
|||||||||||| | | |||||||| |||||||| ||||| || ||| | || || |
Sbjct: 149 aaggaagctgaagctctagctgcacaagatgatggaggtggagaggcactagatcgatta 208
Query: 646 tatgagcgtctagatgcaatggatgctggaactgcagaaaagcgagctgctgaaatttta 705
|||||||||||||| | ||||||||| ||| |||||||||||||| |||||||| |||
Sbjct: 209 tatgagcgtctagaatccttggatgctgcaacagcagaaaagcgagcagctgaaatatta 268
Query: 706 tttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaagatttctctggaggt 765
||||| | |||||||| ||| ||||||||||||| || || | || |||||||| |||
Sbjct: 269 tttggcttaggttttgataaaaaaatgcaagcaaaaaagacaagtgacttctctggtggt 328
Query: 766 tggcgtatgaggattgctttagcaagagcactgtttatgaatccaacaatccttttgctt 825
||||||||| | || ||| | ||| |||| |||| |||||||| ||| | | || ||
Sbjct: 329 tggcgtatgcgaatagctctggcacgagcgttgttcatgaatcctacagttttgttacta 388
Query: 826 gatgagcccacaaaccatctagatcttgaggcttgtgtctggttggaagagacactgaag 885
||||| || ||||| ||||| |||||||| |||||||| ||| | || || | |||||
Sbjct: 389 gatgaacctacaaatcatcttgatcttgaagcttgtgtatggctcgaggaaatgctgaaa 448
Query: 886 aaatttgaccgcatacttgttgtcatatcacactcccaagattttctaaatgga 939
|||||||| ||||| | ||||| |||||||| || ||||||||||| ||||||
Sbjct: 449 aaatttgatcgcattttggttgtaatatcacattcgcaagattttctcaatgga 502
>gb|DR742917.1|DR742917 RTCU1_7_G07.g2_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_7_G07_A029 5', mRNA sequence
Length = 690
Score = 139 bits (70), Expect = 5e-031
Identities = 271/338 (80%)
Strand = Plus / Plus
Query: 1042 atgaagcagtacaaatgggagcaggaacagattgcttcaatgaaggagtacattgctcgc 1101
||||||||||||| |||||||||||| ||||| || ||||||||||| || || ||| |
Sbjct: 23 atgaagcagtacagatgggagcaggagcagatagcgtcaatgaaggaatatatagctaga 82
Query: 1102 ttcggtcatggttctgcaaagcttgctcgtcaggctcagagcaaagagaaaactcttgca 1161
|| ||||||||||||||||| |||||| | || || || || ||||| || || || |||
Sbjct: 83 tttggtcatggttctgcaaaacttgctaggcaagcacaaagtaaagaaaagaccctggca 142
Query: 1162 aagatggagcgaggtggtctcaccgagaaggttgttagggacagagttctagtgttcagg 1221
|||||||| ||||||| || || || || || || || || | ||| |||||||| |
Sbjct: 143 aagatggaaagaggtgggctaacggaaaaagtggtcagagataaagtattagtgttccgt 202
Query: 1222 tttacagatgttggcaaacttcctccacctgtgctgcagtttgttgaagtcaagtttggg 1281
|| || |||||||| || |||||||||||||| ||||||||||| ||||| | ||||||
Sbjct: 203 ttcaccgatgttgggaagcttcctccacctgttctgcagtttgtggaagtagactttggg 262
Query: 1282 tatacaccagataatctcatatacaagagtcttgactttggagttgatcttgactctaga 1341
|| || || || || || ||||| |||| | | || |||||||| ||||| || || ||
Sbjct: 263 tacactcctgaaaaccttatatataagaatatagattttggagtggatctggattcaagg 322
Query: 1342 atcgcattggttggtcccaatggtgcagggaagagcac 1379
|| || ||||||||||| ||||| ||||| ||||||||
Sbjct: 323 atagctttggttggtccaaatggagcaggaaagagcac 360
>gb|AW043038.1|AW043038 ST28E05 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST28E05, mRNA sequence
Length = 601
Score = 137 bits (69), Expect = 2e-030
Identities = 302/380 (79%)
Strand = Plus / Plus
Query: 1000 gatcagtatgttcaaactcgctccgatcttgaagagaatcaaatgaagcagtacaaatgg 1059
||||||||||| ||||| | | |||||||| || || || ||||||||||||| ||||
Sbjct: 23 gatcagtatgtacaaacaagaactgatcttgaggaaaaccagatgaagcagtacagatgg 82
Query: 1060 gagcaggaacagattgcttcaatgaaggagtacattgctcgcttcggtcatggttctgca 1119
|||||||| ||||| || ||||||||||| || || ||| | || |||||||||||||||
Sbjct: 83 gagcaggagcagatagcgtcaatgaaggaatatatagctagatttggtcatggttctgca 142
Query: 1120 aagcttgctcgtcaggctcagagcaaagagaaaactcttgcaaagatggagcgaggtggt 1179
|| |||||| | || || || || ||||| || || || ||||||||||| |||||||
Sbjct: 143 aaacttgctaggcaagcacaaagtaaagaaaagaccctggcaaagatggaaagaggtggg 202
Query: 1180 ctcaccgagaaggttgttagggacagagttctagtgttcaggtttacagatgttggcaaa 1239
|| || || || || || || || | ||| |||||||| | || || |||||||| ||
Sbjct: 203 ctaacggaaaaagtggtcagagataaagtattagtgttccgtttcaccgatgttgggaag 262
Query: 1240 cttcctccacctgtgctgcagtttgttgaagtcaagtttgggtatacaccagataatctc 1299
|||||||||||||| ||||||||||| ||||| | |||||||| || || || || ||
Sbjct: 263 cttcctccacctgttctgcagtttgtggaagtagactttgggtacactcctgaaaacctt 322
Query: 1300 atatacaagagtcttgactttggagttgatcttgactctagaatcgcattggttggtccc 1359
||||| |||| | | || ||||| || ||||| || || || || || |||||||||||
Sbjct: 323 atatataagaatatagattttggngtggatctggattcaaggatagctttggttggtcca 382
Query: 1360 aatggtgcagggaagagcac 1379
||||| ||||| ||||||||
Sbjct: 383 aatggagcaggaaagagcac 402
>gb|CO169818.1|CO169818 NDL1_9_G08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_9_G08_A029 5', mRNA sequence
Length = 512
Score = 135 bits (68), Expect = 8e-030
Identities = 302/380 (79%)
Strand = Plus / Plus
Query: 1000 gatcagtatgttcaaactcgctccgatcttgaagagaatcaaatgaagcagtacaaatgg 1059
||||||||||| ||||| | | |||||||| || || || ||||||||||||| ||||
Sbjct: 58 gatcagtatgtacaaacaagaactgatcttgaggaaaaccagatgaagcagtacagatgg 117
Query: 1060 gagcaggaacagattgcttcaatgaaggagtacattgctcgcttcggtcatggttctgca 1119
|||||||| ||||| || ||||||||||| || || ||| | || |||||||||||||||
Sbjct: 118 gagcaggagcagatagcgtcaatgaaggaatatatagctagatttggtcatggttctgca 177
Query: 1120 aagcttgctcgtcaggctcagagcaaagagaaaactcttgcaaagatggagcgaggtggt 1179
|| |||||| | || || || || ||||| || || || ||||||||||| |||||||
Sbjct: 178 aaacttgctaggcaagcacaaagtaaagaaaagaccctggcaaagatggaaagaggtggg 237
Query: 1180 ctcaccgagaaggttgttagggacagagttctagtgttcaggtttacagatgttggcaaa 1239
|| || || || || || || || | ||| |||||||| | || || |||||||| ||
Sbjct: 238 ctaacggaaaaagtggtcagagataaagtattagtgttccgtttcaccgatgttgggaag 297
Query: 1240 cttcctccacctgtgctgcagtttgttgaagtcaagtttgggtatacaccagataatctc 1299
|||||||||||||| ||||||||||| | ||| | |||||||| || || || || ||
Sbjct: 298 cttcctccacctgttctgcagtttgtggtagtagactttgggtacactcctgaaaacctt 357
Query: 1300 atatacaagagtcttgactttggagttgatcttgactctagaatcgcattggttggtccc 1359
||||| |||| | | || |||||||| ||||| || || || || || |||||||||||
Sbjct: 358 atatataagaatatagattttggagtggatctggattcaaggatagctttggttggtcca 417
Query: 1360 aatggtgcagggaagagcac 1379
||||| ||||| ||||||||
Sbjct: 418 aatggagcaggaaagagcac 437
>gb|DR743574.1|DR743574 RTCU1_16_F11.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_16_F11_A029 5', mRNA sequence
Length = 857
Score = 129 bits (65), Expect = 5e-028
Identities = 266/333 (79%)
Strand = Plus / Plus
Query: 1047 gcagtacaaatgggagcaggaacagattgcttcaatgaaggagtacattgctcgcttcgg 1106
|||||||| |||||||||||| ||||| || ||||||||||| || || ||| | || ||
Sbjct: 1 gcagtacagatgggagcaggagcagatagcgtcaatgaaggaatatatagctagatttgg 60
Query: 1107 tcatggttctgcaaagcttgctcgtcaggctcagagcaaagagaaaactcttgcaaagat 1166
||||||||||||||| |||||| | || || || || ||||| || || || ||||||||
Sbjct: 61 tcatggttctgcaaaacttgctaggcaagcacaaagtaaagaaaagaccctggcaaagat 120
Query: 1167 ggagcgaggtggtctcaccgagaaggttgttagggacagagttctagtgttcaggtttac 1226
||| ||||||| || || || || || || || || | ||| |||||||| | || ||
Sbjct: 121 ggaaagaggtgggctaacggaaaaagtggtcagagataaagtattagtgttccgtttcac 180
Query: 1227 agatgttggcaaacttcctccacctgtgctgcagtttgttgaagtcaagtttgggtatac 1286
|||||||| || |||||||||||||| ||||||||||| ||||| | |||||||| ||
Sbjct: 181 cgatgttgggaagcttcctccacctgttctgcagtttgtggaagtagactttgggtacac 240
Query: 1287 accagataatctcatatacaagagtcttgactttggagttgatcttgactctagaatcgc 1346
|| || || || ||||| |||| | | || |||||||| ||||| || || || || ||
Sbjct: 241 tcctgaaaaccttatatataagaatatagattttggagtggatctggattcaaggatagc 300
Query: 1347 attggttggtcccaatggtgcagggaagagcac 1379
||||||||||| ||||| ||||| ||||||||
Sbjct: 301 tttggttggtccaaatggagcaggaaagagcac 333
Score = 107 bits (54), Expect = 2e-021
Identities = 174/214 (81%)
Strand = Plus / Plus
Query: 1679 tgctcgatgagccgacaaatcatttggacattgagaccattgactccctggcggaggcac 1738
|||| ||||| || || |||||| | |||||||| |||||||| || || || |||||||
Sbjct: 633 tgctagatgaaccaactaatcatcttgacattgaaaccattgattcactcgcagaggcac 692
Query: 1739 tgaatgagtgggatggtggtttggtcttggtgagccatgatttcaggctgatcaaccagg 1798
|||||||||||||||| || | || ||||| ||||| ||||||||||| || ||||| |
Sbjct: 693 tgaatgagtgggatggaggacttgttttggttagccacgatttcaggctcataaaccaag 752
Query: 1799 ttgctcaagagatttgggtgtgtgagaatcaggcggtgacaaggtgggaaggtgatatca 1858
| || ||||||| ||||| ||||| ||| || || || || |||| ||||||||| |
Sbjct: 753 tggccaaagagatatgggtatgtgaaaataagaaagtcacgagatggggaggtgatatta 812
Query: 1859 tggatttcaaggcacacttgaagagcaaggctgg 1892
||||||||||| |||||| || |||||||||||
Sbjct: 813 tggatttcaagagacacttaaaaagcaaggctgg 846
>gb|DR161215.1|DR161215 RTFE1_10_B11.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_B11_A029 5', mRNA sequence
Length = 786
Score = 125 bits (63), Expect = 8e-027
Identities = 271/339 (79%), Gaps = 1/339 (0%)
Strand = Plus / Plus
Query: 1042 atgaagcagtacaaatgggagcaggaacagattgcttcaatgaaggagtacattgctcgc 1101
||||||||||||| |||||||||||| ||||| || ||||||||||| || || ||| |
Sbjct: 2 atgaagcagtacagatgggagcaggagcagatagcgtcaatgaaggaatatatagctaga 61
Query: 1102 ttcggtcatggttctgcaa-agcttgctcgtcaggctcagagcaaagagaaaactcttgc 1160
|| |||||||||||||||| | |||||| | || || || || ||||| || || || ||
Sbjct: 62 tttggtcatggttctgcaagaacttgctaggcaagcacaaagtaaagaaaagaccctggc 121
Query: 1161 aaagatggagcgaggtggtctcaccgagaaggttgttagggacagagttctagtgttcag 1220
||||||||| ||||||| || || || || || || || || | ||| |||||||| |
Sbjct: 122 aaagatggaaagaggtgggctaacggaaaaagtggtcagagataaagtattagtgttccg 181
Query: 1221 gtttacagatgttggcaaacttcctccacctgtgctgcagtttgttgaagtcaagtttgg 1280
|| || |||||||| || |||||||||||||| ||||||||||| ||||| | |||||
Sbjct: 182 tttcaccgatgttgggaagcttcctccacctgttctgcagtttgtggaagtagactttgg 241
Query: 1281 gtatacaccagataatctcatatacaagagtcttgactttggagttgatcttgactctag 1340
||| || || || || || ||||| |||| | | || |||||||| ||||| || || ||
Sbjct: 242 gtacactcctgaaaaccttatatataagaatatagattttggagtggatctggattcaag 301
Query: 1341 aatcgcattggttggtcccaatggtgcagggaagagcac 1379
|| || ||||||||||| ||||| ||||| ||||||||
Sbjct: 302 gatagctttggttggtccaaatggagcaggaaagagcac 340
Score = 81.8 bits (41), Expect = 1e-013
Identities = 119/145 (82%)
Strand = Plus / Plus
Query: 1679 tgctcgatgagccgacaaatcatttggacattgagaccattgactccctggcggaggcac 1738
|||| ||||| || || |||||| | |||||||| |||||||| || || || |||||||
Sbjct: 640 tgctagatgaaccaactaatcatcttgacattgaaaccattgattcactcgcagaggcac 699
Query: 1739 tgaatgagtgggatggtggtttggtcttggtgagccatgatttcaggctgatcaaccagg 1798
|||||||||||||||| || | || ||||| ||||| ||||||||||| || ||||| |
Sbjct: 700 tgaatgagtgggatggaggacttgttttggttagccacgatttcaggctcataaaccaag 759
Query: 1799 ttgctcaagagatttgggtgtgtga 1823
| || ||||||| ||||| |||||
Sbjct: 760 tggccaaagagatatgggtatgtga 784
>gb|BQ695608.1|BQ695608 NXPV_030_E11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_030_E11 5' similar to Arabidopsis
thaliana sequence At5g60790 ABC transporter homolog PnATH
- like see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 497
Score = 123 bits (62), Expect = 3e-026
Identities = 268/338 (79%)
Strand = Plus / Plus
Query: 1042 atgaagcagtacaaatgggagcaggaacagattgcttcaatgaaggagtacattgctcgc 1101
||||||||||||| |||||||||||| ||||| || ||||||||||| || || ||| |
Sbjct: 10 atgaagcagtacagatgggagcaggagcagatagcgtcaatgaaggaatatatagctaga 69
Query: 1102 ttcggtcatggttctgcaaagcttgctcgtcaggctcagagcaaagagaaaactcttgca 1161
|| ||||||||||||||||| |||||| | || || || || ||||| || || || |||
Sbjct: 70 tttggtcatggttctgcaaaacttgctaggcaagcacaaagtaaagaaaagaccctggca 129
Query: 1162 aagatggagcgaggtggtctcaccgagaaggttgttagggacagagttctagtgttcagg 1221
|||||||| ||||||| || || || || || || || || | ||| |||||||| |
Sbjct: 130 aagatggaaagaggtgggctaacggaaaaagtggtcagagataaagtattagtgttccgt 189
Query: 1222 tttacagatgttggcaaacttcctccacctgtgctgcagtttgttgaagtcaagtttggg 1281
|| || |||||||| || |||||||||||||| ||||||||||| ||||| | ||||||
Sbjct: 190 ttcaccgatgttgggaagcttcctccacctgttctgcagtttgtggaagtagactttggg 249
Query: 1282 tatacaccagataatctcatatacaagagtcttgactttggagttgatcttgactctaga 1341
|| || || || || || ||||| |||| | | || |||||||| ||||| || || ||
Sbjct: 250 tacactcctgaaaaccttatatataagaatatagattttggagtggatctggattcaagg 309
Query: 1342 atcgcattggttggtcccaatggtgcagggaagagcac 1379
|| || ||||||||| | ||||| || | ||||||||
Sbjct: 310 atagctttggttggtncaaatggagcngnnaagagcac 347
>gb|BQ698162.1|BQ698162 NXPV_067_C02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_067_C02 5' similar to Arabidopsis
thaliana sequence At5g60790 ABC transporter homolog PnATH
- like see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 536
Score = 123 bits (62), Expect = 3e-026
Identities = 266/335 (79%)
Strand = Plus / Plus
Query: 1045 aagcagtacaaatgggagcaggaacagattgcttcaatgaaggagtacattgctcgcttc 1104
|||||||||| |||||||||||| ||||| || ||||||||||| || || ||| | ||
Sbjct: 1 aagcagtacagatgggagcaggagcagatagcgtcaatgaaggaatatatagctagattt 60
Query: 1105 ggtcatggttctgcaaagcttgctcgtcaggctcagagcaaagagaaaactcttgcaaag 1164
||||||||||||||||| |||||| | || || || || ||||| || || || ||||||
Sbjct: 61 ggtcatggttctgcaaaacttgctaggcaagcacaaagtaaagaaaagaccctggcaaag 120
Query: 1165 atggagcgaggtggtctcaccgagaaggttgttagggacagagttctagtgttcaggttt 1224
||||| ||||||| || || || || || || || || | ||| |||||||| | ||
Sbjct: 121 atggaaagaggtgggctaacggaaaaagtggtcagagataaagtattagtgttccgtttc 180
Query: 1225 acagatgttggcaaacttcctccacctgtgctgcagtttgttgaagtcaagtttgggtat 1284
|| |||||||| || |||||||||||||| ||||||||||| ||||| | ||||||||
Sbjct: 181 accgatgttgggaagcttcctccacctgttctgcagtttgtggaagtagactttgggtac 240
Query: 1285 acaccagataatctcatatacaagagtcttgactttggagttgatcttgactctagaatc 1344
|| || || || || ||||| |||| | | || |||||||| ||||| || || || ||
Sbjct: 241 actcctgaaaaccttatatataagaatatagattttggagtggatctggattcaaggata 300
Query: 1345 gcattggttggtcccaatggtgcagggaagagcac 1379
|| ||||||||||| ||||| || | ||||||||
Sbjct: 301 gctttggttggtccaaatggagcngnnaagagcac 335
>gb|BF777973.1|BF777973 NXSI_079_E01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_079_E01 5' similar to Arabidopsis thaliana
sequence At5g60790 ABC transporter homolog PnATH - like
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 502
Score = 121 bits (61), Expect = 1e-025
Identities = 256/321 (79%)
Strand = Plus / Plus
Query: 1044 gaagcagtacaaatgggagcaggaacagattgcttcaatgaaggagtacattgctcgctt 1103
||||||||||| |||||||||||| ||||| || ||||||||||| || || ||| | ||
Sbjct: 5 gaagcagtacagatgggagcaggagcagatagcgtcaatgaaggaatatatagctagatt 64
Query: 1104 cggtcatggttctgcaaagcttgctcgtcaggctcagagcaaagagaaaactcttgcaaa 1163
||||||||||||||||| |||||| | || || || || ||||| || || || |||||
Sbjct: 65 tggtcatggttctgcaaaacttgctaggcaagcacaaagtaaagaaaagaccctggcaaa 124
Query: 1164 gatggagcgaggtggtctcaccgagaaggttgttagggacagagttctagtgttcaggtt 1223
|||||| ||||||| || || || || || || || || | ||| |||||||| | ||
Sbjct: 125 gatggaaagaggtgggctaacggaaaaagtggtcagagataaagtattagtgttccgttt 184
Query: 1224 tacagatgttggcaaacttcctccacctgtgctgcagtttgttgaagtcaagtttgggta 1283
|| |||||||| || |||||||||||||| ||||||||||| ||||| | ||||||||
Sbjct: 185 caccgatgttgggaagcttcctccacctgttctgcagtttgtggaagtagactttgggta 244
Query: 1284 tacaccagataatctcatatacaagagtcttgactttggagttgatcttgactctagaat 1343
|| || || || || ||||| |||| | | || |||||||| ||||| || || || ||
Sbjct: 245 cactcctgaaaaccttatatataagaatatagattttggagtggatctggattcaaggat 304
Query: 1344 cgcattggttggtcccaatgg 1364
|| ||||||||||| |||||
Sbjct: 305 agctttggttggtccaaatgg 325
>gb|BG833030.1|BG833030 NXPV_088_B08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_088_B08 5' similar to Arabidopsis
thaliana sequence At5g60790 ABC transporter homolog PnATH
- like see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 505
Score = 119 bits (60), Expect = 5e-025
Identities = 265/335 (79%)
Strand = Plus / Plus
Query: 1045 aagcagtacaaatgggagcaggaacagattgcttcaatgaaggagtacattgctcgcttc 1104
|||||||||| |||||||||||| ||||| || ||||||||||| || || ||| | ||
Sbjct: 1 aagcagtacagatgggagcaggagcagatagcgtcaatgaaggaatatatagctagattt 60
Query: 1105 ggtcatggttctgcaaagcttgctcgtcaggctcagagcaaagagaaaactcttgcaaag 1164
||||||||||||||||| |||||| | || || || || ||||| || || || ||||||
Sbjct: 61 ggtcatggttctgcaaaacttgctaggcaagcacaaagtaaagaaaagaccctggcaaag 120
Query: 1165 atggagcgaggtggtctcaccgagaaggttgttagggacagagttctagtgttcaggttt 1224
||||| ||||||| || || || || || || || || | ||| |||||||| | ||
Sbjct: 121 atggaaagaggtgggctaacggaaaaagtggtcagagataaagtattagtgttccgtttc 180
Query: 1225 acagatgttggcaaacttcctccacctgtgctgcagtttgttgaagtcaagtttgggtat 1284
|| |||||||| || |||||||||||||| ||||||||||| ||||| | ||||||||
Sbjct: 181 accgatgttgggaagcttcctccacctgttctgcagtttgtggaagtanactttgggtac 240
Query: 1285 acaccagataatctcatatacaagagtcttgactttggagttgatcttgactctagaatc 1344
|| || || || || ||||| |||| | | || |||||||| || | || || || ||
Sbjct: 241 actcctgaaaaccttatatataagaatatagattttggagtgganntggattcaaggata 300
Query: 1345 gcattggttggtcccaatggtgcagggaagagcac 1379
|| ||||||||||| ||||| |||| ||||||||
Sbjct: 301 gctttggttggtccaaatggagcagnnaagagcac 335
>gb|DR112239.1|DR112239 RTS1_26_G07.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_26_G07_A029 5', mRNA sequence
Length = 334
Score = 119 bits (60), Expect = 5e-025
Identities = 252/316 (79%)
Strand = Plus / Plus
Query: 1042 atgaagcagtacaaatgggagcaggaacagattgcttcaatgaaggagtacattgctcgc 1101
||||||||||||| |||||||||||| ||||| || ||||||||||| || || ||| |
Sbjct: 19 atgaagcagtacagatgggagcaggagcagatagcgtcaatgaaggaatatatagctaga 78
Query: 1102 ttcggtcatggttctgcaaagcttgctcgtcaggctcagagcaaagagaaaactcttgca 1161
|| ||||||||||||||||| |||||| | || || || || ||||| || || || |||
Sbjct: 79 tttggtcatggttctgcaaaacttgctaggcaagcacaaagtaaagaaaagaccctggca 138
Query: 1162 aagatggagcgaggtggtctcaccgagaaggttgttagggacagagttctagtgttcagg 1221
|||||||| ||||||| || || || || || || || || | ||| |||||||| |
Sbjct: 139 aagatggaaagaggtgggctaacggaaaaagtggtcagagataaagtattagtgttccgt 198
Query: 1222 tttacagatgttggcaaacttcctccacctgtgctgcagtttgttgaagtcaagtttggg 1281
|| || |||||||| || |||||||||||||| ||||||||||| ||||| | ||||||
Sbjct: 199 ttcaccgatgttgggaagcttcctccacctgttctgcagtttgtggaagtagactttggg 258
Query: 1282 tatacaccagataatctcatatacaagagtcttgactttggagttgatcttgactctaga 1341
|| || || || || || ||||| |||| | | || |||||||| ||||| || || ||
Sbjct: 259 tacactcctgaaaaccttatatataagaatatagattttggagtggatctggattcaagg 318
Query: 1342 atcgcattggttggtc 1357
|| || ||||||||||
Sbjct: 319 atagctttggttggtc 334
>gb|DR746417.1|DR746417 RTCU1_36_G04.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_36_G04_A029 5', mRNA sequence
Length = 556
Score = 119 bits (60), Expect = 5e-025
Identities = 258/324 (79%)
Strand = Plus / Plus
Query: 1056 atgggagcaggaacagattgcttcaatgaaggagtacattgctcgcttcggtcatggttc 1115
|||||||||||| ||||| || ||||||||||| || || ||| | || |||||||||||
Sbjct: 6 atgggagcaggagcagatagcgtcaatgaaggaatatatagctagatttggtcatggttc 65
Query: 1116 tgcaaagcttgctcgtcaggctcagagcaaagagaaaactcttgcaaagatggagcgagg 1175
|||||| |||||| | || || || || ||||| || || || ||||||||||| ||||
Sbjct: 66 tgcaaaacttgctaggcaagcacaaagtaaagaaaagaccctggcaaagatggaaagagg 125
Query: 1176 tggtctcaccgagaaggttgttagggacagagttctagtgttcaggtttacagatgttgg 1235
||| || || || || || || || || | ||| |||||||| | || || ||||||||
Sbjct: 126 tgggctaacggaaaaagtggtcagagataaagtattagtgttccgtttcaccgatgttgg 185
Query: 1236 caaacttcctccacctgtgctgcagtttgttgaagtcaagtttgggtatacaccagataa 1295
|| |||||||||||||| ||||||||||| ||||| | |||||||| || || || ||
Sbjct: 186 gaagcttcctccacctgttctgcagtttgtggaagtagactttgggtacactcctgaaaa 245
Query: 1296 tctcatatacaagagtcttgactttggagttgatcttgactctagaatcgcattggttgg 1355
|| ||||| |||| | | || |||||||| ||||| || || || || || ||||||||
Sbjct: 246 ccttatatataagaatatagattttggagtggatctggattcaaggatagctttggttgg 305
Query: 1356 tcccaatggtgcagggaagagcac 1379
||| ||||| ||||| ||||||||
Sbjct: 306 tccaaatggagcaggaaagagcac 329
>gb|AL750030.1|AL750030 AL750030 AS Pinus pinaster cDNA clone AS05A05 similar to ABC
TRANSPORTER, mRNA sequence
Length = 694
Score = 115 bits (58), Expect = 8e-024
Identities = 175/214 (81%)
Strand = Plus / Minus
Query: 1679 tgctcgatgagccgacaaatcatttggacattgagaccattgactccctggcggaggcac 1738
|||| ||||| || || |||||| | |||||||| |||||||| || || || |||||||
Sbjct: 422 tgctagatgaaccaactaatcatcttgacattgaaaccattgattcactcgcagaggcac 363
Query: 1739 tgaatgagtgggatggtggtttggtcttggtgagccatgatttcaggctgatcaaccagg 1798
|||||||||||||||| || | || ||||| ||||| ||||||||||| || ||||| |
Sbjct: 362 tgaatgagtgggatggaggacttgttttggttagccacgatttcaggctcataaaccaag 303
Query: 1799 ttgctcaagagatttgggtgtgtgagaatcaggcggtgacaaggtgggaaggtgatatca 1858
| || ||||||| ||||| ||||| ||| || || || || |||| ||||||||| |
Sbjct: 302 tggccaaagagatatgggtatgtgaaaataagaaagtcacgagatggggaggtgatatta 243
Query: 1859 tggatttcaaggcacacttgaagagcaaggctgg 1892
||||||||||| ||||||||| |||||||||||
Sbjct: 242 tggatttcaagcgacacttgaaaagcaaggctgg 209
>gb|BX248891.1|BX248891 BX248891 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP002C11 similar to ATP BINDING CASSETTE, mRNA
sequence
Length = 495
Score = 115 bits (58), Expect = 8e-024
Identities = 175/214 (81%)
Strand = Plus / Plus
Query: 1679 tgctcgatgagccgacaaatcatttggacattgagaccattgactccctggcggaggcac 1738
|||| ||||| || || |||||| | |||||||| |||||||| || || || |||||||
Sbjct: 48 tgctagatgaaccaactaatcatcttgacattgaaaccattgattcactcgcagaggcac 107
Query: 1739 tgaatgagtgggatggtggtttggtcttggtgagccatgatttcaggctgatcaaccagg 1798
|||||||||||||||| || | || ||||| ||||| ||||||||||| || ||||| |
Sbjct: 108 tgaatgagtgggatggaggacttgttttggttagccacgatttcaggctcataaaccaag 167
Query: 1799 ttgctcaagagatttgggtgtgtgagaatcaggcggtgacaaggtgggaaggtgatatca 1858
| || ||||||| ||||| ||||| ||| || || || || |||| ||||||||| |
Sbjct: 168 tggccaaagagatatgggtatgtgaaaataagaaagtcacgagatggggaggtgatatta 227
Query: 1859 tggatttcaaggcacacttgaagagcaaggctgg 1892
||||||||||| ||||||||| |||||||||||
Sbjct: 228 tggatttcaagcgacacttgaaaagcaaggctgg 261
>gb|BX249449.1|BX249449 BX249449 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP024B07 similar to ATP BINDING CASSETTE, mRNA
sequence
Length = 503
Score = 115 bits (58), Expect = 8e-024
Identities = 175/214 (81%)
Strand = Plus / Plus
Query: 1679 tgctcgatgagccgacaaatcatttggacattgagaccattgactccctggcggaggcac 1738
|||| ||||| || || |||||| | |||||||| |||||||| || || || |||||||
Sbjct: 121 tgctagatgaaccaactaatcatcttgacattgaaaccattgattcactcgcagaggcac 180
Query: 1739 tgaatgagtgggatggtggtttggtcttggtgagccatgatttcaggctgatcaaccagg 1798
|||||||||||||||| || | || ||||| ||||| ||||||||||| || ||||| |
Sbjct: 181 tgaatgagtgggatggaggacttgttttggttagccacgatttcaggctcataaaccaag 240
Query: 1799 ttgctcaagagatttgggtgtgtgagaatcaggcggtgacaaggtgggaaggtgatatca 1858
| || ||||||| ||||| ||||| ||| || || || || |||| ||||||||| |
Sbjct: 241 tggccaaagagatatgggtatgtgaaaataagaaagtcacgagatggggaggtgatatta 300
Query: 1859 tggatttcaaggcacacttgaagagcaaggctgg 1892
||||||||||| ||||||||| |||||||||||
Sbjct: 301 tggatttcaagcgacacttgaaaagcaaggctgg 334
>gb|BI202706.1|BI202706 NXPV_097_B09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_097_B09 5' similar to Arabidopsis
thaliana sequence At5g60790 ABC transporter homolog PnATH
- like see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 523
Score = 115 bits (58), Expect = 8e-024
Identities = 254/320 (79%)
Strand = Plus / Plus
Query: 1045 aagcagtacaaatgggagcaggaacagattgcttcaatgaaggagtacattgctcgcttc 1104
|||||||||| |||||||||||| ||||| || ||||||||||| || || ||| | ||
Sbjct: 1 aagcagtacagatgggagcaggagcagatagcgtcaatgaaggaatatatagctagattt 60
Query: 1105 ggtcatggttctgcaaagcttgctcgtcaggctcagagcaaagagaaaactcttgcaaag 1164
||||||||||||||||| |||||| | || || || || ||||| || || || ||||||
Sbjct: 61 ggtcatggttctgcaaaacttgctaggcaagcacaaagtaaagaaaagaccctggcaaag 120
Query: 1165 atggagcgaggtggtctcaccgagaaggttgttagggacagagttctagtgttcaggttt 1224
||||| ||||||| || || || || || || || || | ||| |||||||| | ||
Sbjct: 121 atggaaagaggtgggctaacggaaaaagtggtcagagataaagtattagtgttccgtttc 180
Query: 1225 acagatgttggcaaacttcctccacctgtgctgcagtttgttgaagtcaagtttgggtat 1284
|| |||||||| || |||||||||||||| ||||||||||| ||||| | ||||||||
Sbjct: 181 accgatgttgggaagcttcctccacctgttctgcagtttgtggaagtagactttgggtac 240
Query: 1285 acaccagataatctcatatacaagagtcttgactttggagttgatcttgactctagaatc 1344
|| || || || || ||||| |||| | | || |||||||| ||||| || || || ||
Sbjct: 241 actcctgaaaaccttatatataagaatatagattttggagtggatctggattcaaggatn 300
Query: 1345 gcattggttggtcccaatgg 1364
| ||||||||||| |||||
Sbjct: 301 nctttggttggtccaaatgg 320
>gb|BQ655225.1|BQ655225 NXRV091_F09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV091_F09 5' similar to Arabidopsis thaliana
sequence At5g60790 ABC transporter homolog PnATH - like
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 380
Score = 115 bits (58), Expect = 8e-024
Identities = 223/278 (80%)
Strand = Plus / Plus
Query: 586 aaggaagctgaaattttggctgcacaggatgatggtggtggtgaagcattggagcgtgtt 645
|||||||||||| | | |||||||| |||||||| ||||| || ||| | || || |
Sbjct: 99 aaggaagctgaagctctagctgcacaagatgatggaggtggagaggcactagatcgatta 158
Query: 646 tatgagcgtctagatgcaatggatgctggaactgcagaaaagcgagctgctgaaatttta 705
|||||||||||||| | ||||||||| ||| |||||||||||||| |||||||| |||
Sbjct: 159 tatgagcgtctagaatccttggatgctgcaacagcagaaaagcgagcagctgaaatatta 218
Query: 706 tttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaagatttctctggaggt 765
||||| | |||||||| ||| ||||||||||||| || || | || |||||||| |||
Sbjct: 219 tttggcttaggttttgataaaaaaatgcaagcaaaaaagacaagtgacttctctggtggt 278
Query: 766 tggcgtatgaggattgctttagcaagagcactgtttatgaatccaacaatccttttgctt 825
||||||||| | || ||| | ||| |||| |||| |||||||| ||| | | || ||
Sbjct: 279 tggcgtatgcgaatagctctggcacgagcgttgttcatgaatcctacagttttgttacta 338
Query: 826 gatgagcccacaaaccatctagatcttgaggcttgtgt 863
||||| || ||||| ||||| |||||||| ||||||||
Sbjct: 339 gatgaacctacaaatcatcttgatcttgaagcttgtgt 376
>gb|CO413870.1|CO413870 EST844255 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAMG64 5' end, mRNA sequence
Length = 968
Score = 115 bits (58), Expect = 8e-024
Identities = 223/278 (80%)
Strand = Plus / Plus
Query: 586 aaggaagctgaaattttggctgcacaggatgatggtggtggtgaagcattggagcgtgtt 645
|||||||||||| | | |||||||| |||||||| ||||| || ||| | || || |
Sbjct: 672 aaggaagctgaagctcttgctgcacaagatgatggaggtggagaggcactagatcgatta 731
Query: 646 tatgagcgtctagatgcaatggatgctggaactgcagaaaagcgagctgctgaaatttta 705
|||||||||||||| | ||||||||| ||| |||||||||||||| |||||||| |||
Sbjct: 732 tatgagcgtctagaatccttggatgctgcaacagcagaaaagcgagcagctgaaatatta 791
Query: 706 tttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaagatttctctggaggt 765
||||| | |||||||| ||| ||||||||||||| || || | || |||||||| |||
Sbjct: 792 tttggcttaggttttgataaaaaaatgcaagcaaaaaagacaagtgacttctctggtggt 851
Query: 766 tggcgtatgaggattgctttagcaagagcactgtttatgaatccaacaatccttttgctt 825
||||||||| | || ||| | ||| |||| |||| |||||||| ||| | | || ||
Sbjct: 852 tggcgtatgcgaatagctctggcacgagcgttgttcatgaatcctacagttttgttacta 911
Query: 826 gatgagcccacaaaccatctagatcttgaggcttgtgt 863
||||| || ||||| ||||| |||||||| ||||||||
Sbjct: 912 gatgaacctacaaatcatcttgatcttgaagcttgtgt 949
>gb|CO368711.1|CO368711 RTK1_42_G08.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_42_G08_A029 3', mRNA sequence
Length = 866
Score = 115 bits (58), Expect = 8e-024
Identities = 223/278 (80%)
Strand = Plus / Minus
Query: 586 aaggaagctgaaattttggctgcacaggatgatggtggtggtgaagcattggagcgtgtt 645
|||||||||||| | | |||||||| |||||||| ||||| || ||| | || || |
Sbjct: 287 aaggaagctgaagctctagctgcacaagatgatggaggtggagaggcactagatcgatta 228
Query: 646 tatgagcgtctagatgcaatggatgctggaactgcagaaaagcgagctgctgaaatttta 705
|||||||||||||| | ||||||||| ||| |||||||||||||| |||||||| |||
Sbjct: 227 tatgagcgtctagaatccttggatgctgcaacagcagaaaagcgagcagctgaaatatta 168
Query: 706 tttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaagatttctctggaggt 765
||||| | |||||||| ||| ||||||||||||| || || | || |||||||| |||
Sbjct: 167 tttggcttaggttttgataaaaaaatgcaagcaaaaaagacaagtgacttctctggtggt 108
Query: 766 tggcgtatgaggattgctttagcaagagcactgtttatgaatccaacaatccttttgctt 825
||||||||| | || ||| | ||| |||| |||| |||||||| ||| | | || ||
Sbjct: 107 tggcgtatgcgaatagctctggcacgagcgttgttcatgaatcctacagttttgttacta 48
Query: 826 gatgagcccacaaaccatctagatcttgaggcttgtgt 863
||||| || ||||| ||||| |||||||| ||||||||
Sbjct: 47 gatgaacctacaaatcatcttgatcttgaagcttgtgt 10
>gb|CV034685.1|CV034685 RTNACL1_10_H06.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_10_H06_A029 5', mRNA sequence
Length = 711
Score = 115 bits (58), Expect = 8e-024
Identities = 223/278 (80%)
Strand = Plus / Plus
Query: 586 aaggaagctgaaattttggctgcacaggatgatggtggtggtgaagcattggagcgtgtt 645
|||||||||||| | | |||||||| |||||||| ||||| || ||| | || || |
Sbjct: 429 aaggaagctgaagctctagctgcacaagatgatggaggtggagaggcactagatcgatta 488
Query: 646 tatgagcgtctagatgcaatggatgctggaactgcagaaaagcgagctgctgaaatttta 705
|||||||||||||| | ||||||||| ||| |||||||||||||| |||||||| |||
Sbjct: 489 tatgagcgtctagaatccttggatgctgcaacagcagaaaagcgagcagctgaaatatta 548
Query: 706 tttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaagatttctctggaggt 765
||||| | |||||||| ||| ||||||||||||| || || | || |||||||| |||
Sbjct: 549 tttggcttaggttttgataaaaaaatgcaagcaaaaaagacaagtgacttctctggtggt 608
Query: 766 tggcgtatgaggattgctttagcaagagcactgtttatgaatccaacaatccttttgctt 825
||||||||| | || ||| | ||| |||| |||| |||||||| ||| | | || ||
Sbjct: 609 tggcgtatgcgaatagctctggcacgagcgttgttcatgaatcctacagttttgttacta 668
Query: 826 gatgagcccacaaaccatctagatcttgaggcttgtgt 863
||||| || ||||| ||||| |||||||| ||||||||
Sbjct: 669 gatgaacctacaaatcatcttgatcttgaagcttgtgt 706
>gb|DN447027.1|DN447027 EST942826 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIBO31 5' end, mRNA sequence
Length = 960
Score = 115 bits (58), Expect = 8e-024
Identities = 223/278 (80%)
Strand = Plus / Plus
Query: 586 aaggaagctgaaattttggctgcacaggatgatggtggtggtgaagcattggagcgtgtt 645
|||||||||||| | | |||||||| |||||||| ||||| || ||| | || || |
Sbjct: 672 aaggaagctgaagctcttgctgcacaagatgatggaggtggagaggcactagatcgatta 731
Query: 646 tatgagcgtctagatgcaatggatgctggaactgcagaaaagcgagctgctgaaatttta 705
|||||||||||||| | ||||||||| ||| |||||||||||||| |||||||| |||
Sbjct: 732 tatgagcgtctagaatccttggatgctgcaacagcagaaaagcgagcagctgaaatatta 791
Query: 706 tttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaagatttctctggaggt 765
||||| | |||||||| ||| ||||||||||||| || || | || |||||||| |||
Sbjct: 792 tttggcttaggttttgataaaaaaatgcaagcaaaaaagacaagtgacttctctggtggt 851
Query: 766 tggcgtatgaggattgctttagcaagagcactgtttatgaatccaacaatccttttgctt 825
||||||||| | || ||| | ||| |||| |||| |||||||| ||| | | || ||
Sbjct: 852 tggcgtatgcgaatagctctggcacgagcgttgttcatgaatcctacagttttgttacta 911
Query: 826 gatgagcccacaaaccatctagatcttgaggcttgtgt 863
||||| || ||||| ||||| |||||||| ||||||||
Sbjct: 912 gatgaacctacaaatcatcttgatcttgaagcttgtgt 949
>gb|DN453530.1|DN453530 EST949329 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIFT78 5' end, mRNA sequence
Length = 699
Score = 115 bits (58), Expect = 8e-024
Identities = 223/278 (80%)
Strand = Plus / Plus
Query: 586 aaggaagctgaaattttggctgcacaggatgatggtggtggtgaagcattggagcgtgtt 645
|||||||||||| | | |||||||| |||||||| ||||| || ||| | || || |
Sbjct: 367 aaggaagctgaagctctagctgcacaagatgatggaggtggagaggcactagatcgatta 426
Query: 646 tatgagcgtctagatgcaatggatgctggaactgcagaaaagcgagctgctgaaatttta 705
|||||||||||||| | ||||||||| ||| |||||||||||||| |||||||| |||
Sbjct: 427 tatgagcgtctagaatccttggatgctgcaacagcagaaaagcgagcagctgaaatatta 486
Query: 706 tttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaagatttctctggaggt 765
||||| | |||||||| ||| ||||||||||||| || || | || |||||||| |||
Sbjct: 487 tttggcttaggttttgataaaaaaatgcaagcaaaaaagacaagtgacttctctggtggt 546
Query: 766 tggcgtatgaggattgctttagcaagagcactgtttatgaatccaacaatccttttgctt 825
||||||||| | || ||| | ||| |||| |||| |||||||| ||| | | || ||
Sbjct: 547 tggcgtatgcgaatagctctggcacgagcgttgttcatgaatcctacagttttgttacta 606
Query: 826 gatgagcccacaaaccatctagatcttgaggcttgtgt 863
||||| || ||||| ||||| |||||||| ||||||||
Sbjct: 607 gatgaacctacaaatcatcttgatcttgaagcttgtgt 644
>gb|DN460440.1|DN460440 EST956239 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHY57 5' end, mRNA sequence
Length = 822
Score = 115 bits (58), Expect = 8e-024
Identities = 223/278 (80%)
Strand = Plus / Plus
Query: 586 aaggaagctgaaattttggctgcacaggatgatggtggtggtgaagcattggagcgtgtt 645
|||||||||||| | | |||||||| |||||||| ||||| || ||| | || || |
Sbjct: 526 aaggaagctgaagctctagctgcacaagatgatggaggtggagaggcactagatcgatta 585
Query: 646 tatgagcgtctagatgcaatggatgctggaactgcagaaaagcgagctgctgaaatttta 705
|||||||||||||| | ||||||||| ||| |||||||||||||| |||||||| |||
Sbjct: 586 tatgagcgtctagaatccttggatgctgcaacagcagaaaagcgagcagctgaaatatta 645
Query: 706 tttggtctgggttttgacaaacaaatgcaagcaaagaaaactaaagatttctctggaggt 765
||||| | |||||||| ||| ||||||||||||| || || | || |||||||| |||
Sbjct: 646 tttggcttaggttttgataaaaaaatgcaagcaaaaaagacaagtgacttctctggtggt 705
Query: 766 tggcgtatgaggattgctttagcaagagcactgtttatgaatccaacaatccttttgctt 825
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Sbjct: 706 tggcgtatgcgaatagctctggcacgagcgttgttcatgaatcctacagttttgttacta 765
Query: 826 gatgagcccacaaaccatctagatcttgaggcttgtgt 863
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Sbjct: 766 gatgaacctacaaatcatcttgatcttgaagcttgtgt 803
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 281,433
Number of Sequences: 355925
Number of extensions: 281433
Number of successful extensions: 81169
Number of sequences better than 0.5: 178
Number of HSP's better than 0.5 without gapping: 177
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 80529
Number of HSP's gapped (non-prelim): 463
length of query: 2083
length of database: 217,277,237
effective HSP length: 20
effective length of query: 2063
effective length of database: 210,158,737
effective search space: 433557474431
effective search space used: 433557474431
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)