BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE12f02.yg.2.1
(290 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRN... 56 8e-007
gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mR... 54 3e-006
gb|BQ698421.1|BQ698421 NXPV_069_F11_F NXPV (Nsf Xylem Plani... 52 1e-005
gb|DR684943.1|DR684943 EST1075020 Normalized pine embryo li... 52 1e-005
gb|DR687054.1|DR687054 EST1077132 Normalized pine embryo li... 52 1e-005
gb|DR692054.1|DR692054 EST1082141 Normalized pine embryo li... 52 1e-005
gb|DT632612.1|DT632612 EST1147543 Normalized pine embryo li... 52 1e-005
gb|DT633819.1|DT633819 EST1148750 Normalized pine embryo li... 52 1e-005
gb|AH014319.1|SEG_AY764731S Pinus taeda isolate 27 cellulos... 50 5e-005
gb|AY764732.1|AY764731S2 Pinus taeda isolate 27 cellulose s... 50 5e-005
gb|CF478733.1|CF478733 RTWW3_16_G10.g1_A022 Well-watered lo... 48 2e-004
gb|CV031645.1|CV031645 RTNACL1_2_G07.g1_A029 Roots plus add... 48 2e-004
gb|DR096307.1|DR096307 STRR1_27_D08.b1_A033 Stem Response R... 48 2e-004
gb|DR096386.1|DR096386 STRR1_27_D08.g1_A033 Stem Response R... 48 2e-004
gb|BV079716.1| Pp_CesA4 Pinus pinaster megagametophytes Pin... 46 8e-004
gb|AW698152.1|AW698152 NXNV_073_G04_F Nsf Xylem Normal wood... 44 0.003
gb|BE762150.1|BE762150 NXCI_082_D03_F NXCI (Nsf Xylem Compr... 44 0.003
gb|CD027901.1|CD027901 NXNV_073_G04 Nsf Xylem Normal wood V... 44 0.003
gb|DR118030.1|DR118030 RTMG1_10_E11.g1_A029 Roots minus mag... 44 0.003
gb|DR163320.1|DR163320 RTFE1_42_F04.b1_A029 Roots minus iro... 44 0.003
gb|AW042872.1|AW042872 ST26D09 Pine TriplEx shoot tip libra... 42 0.012
gb|AW064806.1|AW064806 ST36A06 Pine TriplEx shoot tip libra... 42 0.012
gb|AL749837.1|AL749837 AL749837 AS Pinus pinaster cDNA clon... 42 0.012
gb|AW697996.1|AW697996 NXNV_079_C07_F Nsf Xylem Normal wood... 42 0.012
gb|BG039685.1|BG039685 NXSI_102_H08_F NXSI (Nsf Xylem Side ... 42 0.012
gb|BQ695648.1|BQ695648 NXPV_030_H04_F NXPV (Nsf Xylem Plani... 42 0.012
gb|BQ697774.1|BQ697774 NXPV_052_F10_F NXPV (Nsf Xylem Plani... 42 0.012
gb|BQ703105.1|BQ703105 NXSI_136_D09_F NXSI (Nsf Xylem Side ... 42 0.012
gb|CD023932.1|CD023932 NXRV_018_G08_F NXRV (Nsf Xylem Root ... 42 0.012
gb|DR060720.1|DR060720 RTNIT1_29_C08.g1_A029 Roots minus ni... 42 0.012
dbj|BD236020.1| Materials and method for modification of pl... 42 0.012
gb|AY639654.1| Pinus radiata cellulose synthase catalytic s... 42 0.012
gb|AH014290.1|SEG_AY764673S Pinus taeda isolate 11 cellulos... 42 0.012
gb|AY764674.1|AY764673S2 Pinus taeda isolate 11 cellulose s... 42 0.012
gb|AH014291.1|SEG_AY764675S Pinus taeda isolate 16 cellulos... 42 0.012
gb|AY764676.1|AY764675S2 Pinus taeda isolate 16 cellulose s... 42 0.012
gb|AH014292.1|SEG_AY764677S Pinus taeda isolate 25 cellulos... 42 0.012
gb|AY764678.1|AY764677S2 Pinus taeda isolate 25 cellulose s... 42 0.012
gb|AH014293.1|SEG_AY764679S Pinus taeda isolate 7 cellulose... 42 0.012
gb|AY764680.1|AY764679S2 Pinus taeda isolate 7 cellulose sy... 42 0.012
gb|AH014294.1|SEG_AY764681S Pinus taeda isolate 6 cellulose... 42 0.012
gb|AY764682.1|AY764681S2 Pinus taeda isolate 6 cellulose sy... 42 0.012
gb|AH014295.1|SEG_AY764683S Pinus taeda isolate 4 cellulose... 42 0.012
gb|AY764684.1|AY764683S2 Pinus taeda isolate 4 cellulose sy... 42 0.012
gb|AH014296.1|SEG_AY764685S Pinus taeda isolate 26 cellulos... 42 0.012
gb|AY764686.1|AY764685S2 Pinus taeda isolate 26 cellulose s... 42 0.012
gb|AH014297.1|SEG_AY764687S Pinus taeda isolate 9 cellulose... 42 0.012
gb|AY764688.1|AY764687S2 Pinus taeda isolate 9 cellulose sy... 42 0.012
gb|AH014298.1|SEG_AY764689S Pinus taeda isolate 23 cellulos... 42 0.012
gb|AY764690.1|AY764689S2 Pinus taeda isolate 23 cellulose s... 42 0.012
gb|AH014299.1|SEG_AY764691S Pinus taeda isolate 13 cellulos... 42 0.012
gb|AY764692.1|AY764691S2 Pinus taeda isolate 13 cellulose s... 42 0.012
gb|AH014300.1|SEG_AY764693S Pinus taeda isolate 30 cellulos... 42 0.012
gb|AY764694.1|AY764693S2 Pinus taeda isolate 30 cellulose s... 42 0.012
gb|AH014301.1|SEG_AY764695S Pinus taeda isolate 22 cellulos... 42 0.012
gb|AY764696.1|AY764695S2 Pinus taeda isolate 22 cellulose s... 42 0.012
gb|AH014302.1|SEG_AY764697S Pinus taeda isolate 32 cellulos... 42 0.012
gb|AY764698.1|AY764697S2 Pinus taeda isolate 32 cellulose s... 42 0.012
gb|AH014303.1|SEG_AY764699S Pinus taeda isolate 18 cellulos... 42 0.012
gb|AY764700.1|AY764699S2 Pinus taeda isolate 18 cellulose s... 42 0.012
gb|AH014304.1|SEG_AY764701S Pinus taeda isolate 10 cellulos... 42 0.012
gb|AY764702.1|AY764701S2 Pinus taeda isolate 10 cellulose s... 42 0.012
gb|AH014305.1|SEG_AY764703S Pinus taeda isolate 14 cellulos... 42 0.012
gb|AY764704.1|AY764703S2 Pinus taeda isolate 14 cellulose s... 42 0.012
gb|AH014306.1|SEG_AY764705S Pinus taeda isolate 21 cellulos... 42 0.012
gb|AY764706.1|AY764705S2 Pinus taeda isolate 21 cellulose s... 42 0.012
gb|AH014307.1|SEG_AY764707S Pinus taeda isolate 31 cellulos... 42 0.012
gb|AY764708.1|AY764707S2 Pinus taeda isolate 31 cellulose s... 42 0.012
gb|AH014308.1|SEG_AY764709S Pinus taeda isolate 5 cellulose... 42 0.012
gb|AY764710.1|AY764709S2 Pinus taeda isolate 5 cellulose sy... 42 0.012
gb|AH014309.1|SEG_AY764711S Pinus taeda isolate 2 cellulose... 42 0.012
gb|AY764712.1|AY764711S2 Pinus taeda isolate 2 cellulose sy... 42 0.012
gb|AH014310.1|SEG_AY764713S Pinus taeda isolate 3 cellulose... 42 0.012
gb|AY764714.1|AY764713S2 Pinus taeda isolate 3 cellulose sy... 42 0.012
gb|AH014311.1|SEG_AY764715S Pinus taeda isolate 19 cellulos... 42 0.012
gb|AY764716.1|AY764715S2 Pinus taeda isolate 19 cellulose s... 42 0.012
gb|AH014312.1|SEG_AY764717S Pinus taeda isolate 28 cellulos... 42 0.012
gb|AY764718.1|AY764717S2 Pinus taeda isolate 28 cellulose s... 42 0.012
gb|AH014313.1|SEG_AY764719S Pinus taeda isolate 17 cellulos... 42 0.012
gb|AY764720.1|AY764719S2 Pinus taeda isolate 17 cellulose s... 42 0.012
gb|AH014314.1|SEG_AY764721S Pinus taeda isolate 8 cellulose... 42 0.012
gb|AY764722.1|AY764721S2 Pinus taeda isolate 8 cellulose sy... 42 0.012
gb|AH014315.1|SEG_AY764723S Pinus taeda isolate 15 cellulos... 42 0.012
gb|AY764724.1|AY764723S2 Pinus taeda isolate 15 cellulose s... 42 0.012
gb|AH014316.1|SEG_AY764725S Pinus taeda isolate 1 cellulose... 42 0.012
gb|AY764726.1|AY764725S2 Pinus taeda isolate 1 cellulose sy... 42 0.012
gb|AH014317.1|SEG_AY764727S Pinus taeda isolate 29 cellulos... 42 0.012
gb|AY764728.1|AY764727S2 Pinus taeda isolate 29 cellulose s... 42 0.012
gb|AH014318.1|SEG_AY764729S Pinus taeda isolate 20 cellulos... 42 0.012
gb|AY764730.1|AY764729S2 Pinus taeda isolate 20 cellulose s... 42 0.012
gb|AH014320.1|SEG_AY764733S Pinus taeda isolate 12 cellulos... 42 0.012
gb|AY764734.1|AY764733S2 Pinus taeda isolate 12 cellulose s... 42 0.012
gb|AH014321.1|SEG_AY764735S Pinus taeda isolate 24 cellulos... 42 0.012
gb|AY764736.1|AY764735S2 Pinus taeda isolate 24 cellulose s... 42 0.012
gb|AY789652.1| Pinus taeda cellulose synthase catalytic sub... 42 0.012
gb|BX249614.1|BX249614 BX249614 Pinus pinaster differenciat... 40 0.047
gb|BX254022.1|BX254022 BX254022 Pinus pinaster differenciat... 40 0.047
gb|BX254483.1|BX254483 BX254483 Pinus pinaster differenciat... 40 0.047
gb|BX254948.1|BX254948 BX254948 Pinus pinaster differenciat... 40 0.047
gb|BX255349.1|BX255349 BX255349 Pinus pinaster differenciat... 40 0.047
gb|BE209203.1|BE209203 NXNV_147_C08_F Nsf Xylem Normal wood... 40 0.047
gb|BF609149.1|BF609149 NXSI_040_H08_F NXSI (Nsf Xylem Side ... 40 0.047
gb|BF609565.1|BF609565 NXSI_046_C11_F NXSI (Nsf Xylem Side ... 40 0.047
gb|BF610213.1|BF610213 NXSI_056_B10_F NXSI (Nsf Xylem Side ... 40 0.047
gb|BF777661.1|BF777661 NXSI_073_C10_F NXSI (Nsf Xylem Side ... 40 0.047
gb|BG040499.1|BG040499 NXSI_108_H05_F NXSI (Nsf Xylem Side ... 40 0.047
gb|BG040950.1|BG040950 NXSI_117_A06_F NXSI (Nsf Xylem Side ... 40 0.047
gb|BG275218.1|BG275218 NXSI_138_C06_F NXSI (Nsf Xylem Side ... 40 0.047
gb|CF666027.1|CF666027 RTCNT1_20_E07.b1_A029 Root control P... 40 0.047
gb|CF672816.1|CF672816 RTCNT1_74_D05.b1_A029 Root control P... 40 0.047
gb|CO168623.1|CO168623 NDL1_1_A02.g1_A029 Needles control P... 40 0.047
gb|AY789650.1| Pinus taeda cellulose synthase catalytic sub... 40 0.047
gb|AY262815.1| Pinus radiata cellulose synthase (CesA3) mRN... 40 0.047
gb|DR682518.1|DR682518 EST1072593 Normalized pine embryo li... 38 0.19
>gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRNA, partial cds
Length = 3603
Score = 56.0 bits (28), Expect = 8e-007
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
||||| || ||||| ||||| ||||||||||||| | | || || || ||||| ||||||
Sbjct: 2992 ttcggaaaactcttttttgcgttttgggtgattgtccatctttaccctttcctgaaaggt 3051
Query: 183 ttggttgggaggcaaaacaggacaccgacaatt 215
||| | || | |||||||||||||| ||||||
Sbjct: 3052 ttgatgggacgacaaaacaggacacccacaatt 3084
>gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mRNA, complete cds
Length = 4428
Score = 54.0 bits (27), Expect = 3e-006
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
||||| ||||| ||||| ||||||||||||| | || ||||| |||||||||||||||
Sbjct: 3733 gggaaactcttttttgctttttgggtgattgttcacctttatcctttcctcaaaggtttg 3792
>gb|BQ698421.1|BQ698421 NXPV_069_F11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_069_F11 5' similar to Arabidopsis
thaliana sequence At5g05170 cellulose synthase catalytic
subunit (Ath-B) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 497
Score = 52.0 bits (26), Expect = 1e-005
Identities = 103/132 (78%)
Strand = Plus / Plus
Query: 84 aatgcaatcaataatggatacgagtcatggggnnnnnnnttcgggaagctcttctttgca 143
||||| || ||||||||||| ||||||||||| ||||| || || || |||||
Sbjct: 72 aatgccattaataatggatatgagtcatggggccctctgttcggaaaacttttttttgcc 131
Query: 144 ttttgggtgattgncnanctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|| |||||||||| | ||||||| ||||| ||||||||| | || ||||| ||| ||
Sbjct: 132 ttctgggtgattgtgcatttgtatcctttcctaaaaggtttgatgggaaggcagaaccgg 191
Query: 204 acaccgacaatt 215
||||| ||||||
Sbjct: 192 acacccacaatt 203
>gb|DR684943.1|DR684943 EST1075020 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAY38 3' end, mRNA sequence
Length = 859
Score = 52.0 bits (26), Expect = 1e-005
Identities = 103/132 (78%)
Strand = Plus / Plus
Query: 84 aatgcaatcaataatggatacgagtcatggggnnnnnnnttcgggaagctcttctttgca 143
||||| || ||||||||||| ||||||||||| ||||| || || || |||||
Sbjct: 370 aatgccattaataatggatatgagtcatggggccctctgttcggaaaacttttttttgcc 429
Query: 144 ttttgggtgattgncnanctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|| |||||||||| | ||||||| ||||| ||||||||| | || ||||| ||| ||
Sbjct: 430 ttctgggtgattgtgcatttgtatcctttcctaaaaggtttgatgggaaggcagaaccgg 489
Query: 204 acaccgacaatt 215
||||| ||||||
Sbjct: 490 acacccacaatt 501
>gb|DR687054.1|DR687054 EST1077132 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABM78 3' end, mRNA sequence
Length = 740
Score = 52.0 bits (26), Expect = 1e-005
Identities = 103/132 (78%)
Strand = Plus / Plus
Query: 84 aatgcaatcaataatggatacgagtcatggggnnnnnnnttcgggaagctcttctttgca 143
||||| || ||||||||||| ||||||||||| ||||| || || || |||||
Sbjct: 465 aatgccattaataatggatatgagtcatggggccctctgttcggaaaacttttttttgcc 524
Query: 144 ttttgggtgattgncnanctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|| |||||||||| | ||||||| ||||| ||||||||| | || ||||| ||| ||
Sbjct: 525 ttctgggtgattgtgcatttgtatcctttcctaaaaggtttgatgggaaggcagaaccgg 584
Query: 204 acaccgacaatt 215
||||| ||||||
Sbjct: 585 acacccacaatt 596
>gb|DR692054.1|DR692054 EST1082141 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADH43 3' end, mRNA sequence
Length = 770
Score = 52.0 bits (26), Expect = 1e-005
Identities = 103/132 (78%)
Strand = Plus / Plus
Query: 84 aatgcaatcaataatggatacgagtcatggggnnnnnnnttcgggaagctcttctttgca 143
||||| || ||||||||||| ||||||||||| ||||| || || || |||||
Sbjct: 125 aatgccattaataatggatatgagtcatggggccctctgttcggaaaacttttttttgcc 184
Query: 144 ttttgggtgattgncnanctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|| |||||||||| | ||||||| ||||| ||||||||| | || ||||| ||| ||
Sbjct: 185 ttctgggtgattgtgcatttgtatcctttcctaaaaggtttgatgggaaggcagaaccgg 244
Query: 204 acaccgacaatt 215
||||| ||||||
Sbjct: 245 acacccacaatt 256
>gb|DT632612.1|DT632612 EST1147543 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFL85 3' end, mRNA sequence
Length = 771
Score = 52.0 bits (26), Expect = 1e-005
Identities = 103/132 (78%)
Strand = Plus / Plus
Query: 84 aatgcaatcaataatggatacgagtcatggggnnnnnnnttcgggaagctcttctttgca 143
||||| || ||||||||||| ||||||||||| ||||| || || || |||||
Sbjct: 378 aatgccattaataatggatatgagtcatggggccctctgttcggaaaacttttttttgcc 437
Query: 144 ttttgggtgattgncnanctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|| |||||||||| | ||||||| ||||| ||||||||| | || ||||| ||| ||
Sbjct: 438 ttctgggtgattgtgcatttgtatcctttcctaaaaggtttgatgggaaggcagaaccgg 497
Query: 204 acaccgacaatt 215
||||| ||||||
Sbjct: 498 acacccacaatt 509
>gb|DT633819.1|DT633819 EST1148750 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFZ11 3' end, mRNA sequence
Length = 688
Score = 52.0 bits (26), Expect = 1e-005
Identities = 103/132 (78%)
Strand = Plus / Plus
Query: 84 aatgcaatcaataatggatacgagtcatggggnnnnnnnttcgggaagctcttctttgca 143
||||| || ||||||||||| ||||||||||| ||||| || || || |||||
Sbjct: 473 aatgccattaataatggatatgagtcatggggccctctgttcggaaaacttttttttgcc 532
Query: 144 ttttgggtgattgncnanctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|| |||||||||| | ||||||| ||||| ||||||||| | || ||||| ||| ||
Sbjct: 533 ttctgggtgattgtgcatttgtatcctttcctaaaaggtttgatgggaaggcagaaccgg 592
Query: 204 acaccgacaatt 215
||||| ||||||
Sbjct: 593 acacccacaatt 604
>gb|AH014319.1|SEG_AY764731S Pinus taeda isolate 27 cellulose synthase genes, partial cds
Length = 1023
Score = 50.1 bits (25), Expect = 5e-005
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
||||| ||||||||||| ||||| |||| | |||||||| ||||||||||||
Sbjct: 752 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaaaggt 805
>gb|AY764732.1|AY764731S2 Pinus taeda isolate 27 cellulose synthase gene, partial cds
Length = 452
Score = 50.1 bits (25), Expect = 5e-005
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
||||| ||||||||||| ||||| |||| | |||||||| ||||||||||||
Sbjct: 181 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaaaggt 234
>gb|CF478733.1|CF478733 RTWW3_16_G10.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_16_G10_A022 5', mRNA sequence
Length = 695
Score = 48.1 bits (24), Expect = 2e-004
Identities = 75/93 (80%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
||||| || ||||| ||||| ||||||||||||| | | || || || ||||| ||||||
Sbjct: 222 ttcggaaaactcttttttgcgttttgggtgattgtccatctttaccctttcctgaaaggt 281
Query: 183 ttggttgggaggcaaaacaggacaccgacaatt 215
||| | || | || ||||||||||| ||||||
Sbjct: 282 ttgatgggacgacagaacaggacacccacaatt 314
>gb|CV031645.1|CV031645 RTNACL1_2_G07.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_2_G07_A029 5', mRNA sequence
Length = 796
Score = 48.1 bits (24), Expect = 2e-004
Identities = 75/93 (80%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
||||| || ||||| ||||| ||||||||||||| | | || || || ||||| ||||||
Sbjct: 494 ttcggaaaactcttttttgcgttttgggtgattgtccatctttaccctttcctgaaaggt 553
Query: 183 ttggttgggaggcaaaacaggacaccgacaatt 215
||| | || | || ||||||||||| ||||||
Sbjct: 554 ttgatgggacgacagaacaggacacccacaatt 586
>gb|DR096307.1|DR096307 STRR1_27_D08.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_27_D08_A033 3', mRNA sequence
Length = 797
Score = 48.1 bits (24), Expect = 2e-004
Identities = 75/93 (80%)
Strand = Plus / Minus
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
||||| || ||||| ||||| ||||||||||||| | | || || || ||||| ||||||
Sbjct: 290 ttcggaaaactcttttttgcgttttgggtgattgtccatctttaccctttcctgaaaggt 231
Query: 183 ttggttgggaggcaaaacaggacaccgacaatt 215
||| | || | || ||||||||||| ||||||
Sbjct: 230 ttgatgggacgacagaacaggacacccacaatt 198
>gb|DR096386.1|DR096386 STRR1_27_D08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_27_D08_A033 5', mRNA sequence
Length = 744
Score = 48.1 bits (24), Expect = 2e-004
Identities = 75/93 (80%)
Strand = Plus / Minus
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
||||| || ||||| ||||| ||||||||||||| | | || || || ||||| ||||||
Sbjct: 552 ttcggaaaactcttttttgcgttttgggtgattgtccatctttaccctttcctgaaaggt 493
Query: 183 ttggttgggaggcaaaacaggacaccgacaatt 215
||| | || | || ||||||||||| ||||||
Sbjct: 492 ttgatgggacgacagaacaggacacccacaatt 460
>gb|BV079716.1| Pp_CesA4 Pinus pinaster megagametophytes Pinus pinaster STS
genomic, sequence tagged site
Length = 489
Score = 46.1 bits (23), Expect = 8e-004
Identities = 68/84 (80%)
Strand = Plus / Minus
Query: 132 ctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggttggg 191
||||| ||||| ||||||||||||| | | || || || ||||| ||||||||| | ||
Sbjct: 312 ctcttttttgcgttttgggtgattgtccatctttaccctttcctgaaaggtttgatggga 253
Query: 192 aggcaaaacaggacaccgacaatt 215
| || ||||||||||| ||||||
Sbjct: 252 cgacagaacaggacacccacaatt 229
>gb|AW698152.1|AW698152 NXNV_073_G04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_073_G04 5', mRNA sequence
Length = 240
Score = 44.1 bits (22), Expect = 0.003
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 135 ttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
||||||||||| |||||||||| | || ||||| ||||| |||||||||
Sbjct: 101 ttctttgcattctgggtgattgtacatctatatcctttcctgaaaggtttg 151
>gb|BE762150.1|BE762150 NXCI_082_D03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_082_D03 5' similar to Arabidopsis
thaliana sequence At5g44030 cellulose synthase catalytic
subunit-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 238
Score = 44.1 bits (22), Expect = 0.003
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 135 ttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
||||||||||| |||||||||| | || ||||| ||||| |||||||||
Sbjct: 8 ttctttgcattctgggtgattgtacatctatatcctttcctgaaaggtttg 58
>gb|CD027901.1|CD027901 NXNV_073_G04 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_073_G04 5' similar to Arabidopsis thaliana sequence
At5g17420 cellulose synthase catalytic subunit (IRX3)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 240
Score = 44.1 bits (22), Expect = 0.003
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 135 ttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
||||||||||| |||||||||| | || ||||| ||||| |||||||||
Sbjct: 101 ttctttgcattctgggtgattgtacatctatatcctttcctgaaaggtttg 151
>gb|DR118030.1|DR118030 RTMG1_10_E11.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_10_E11_A029 5', mRNA sequence
Length = 700
Score = 44.1 bits (22), Expect = 0.003
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 135 ttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
||||||||||| |||||||||| | || ||||| ||||| |||||||||
Sbjct: 111 ttctttgcattctgggtgattgtacatctatatcctttcctgaaaggtttg 161
>gb|DR163320.1|DR163320 RTFE1_42_F04.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_42_F04_A029 3', mRNA sequence
Length = 835
Score = 44.1 bits (22), Expect = 0.003
Identities = 43/51 (84%)
Strand = Plus / Minus
Query: 135 ttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttg 185
||||||||||| |||||||||| | || ||||| ||||| |||||||||
Sbjct: 632 ttctttgcattctgggtgattgtacatctatatcctttcctgaaaggtttg 582
>gb|AW042872.1|AW042872 ST26D09 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST26D09, mRNA sequence
Length = 569
Score = 42.1 bits (21), Expect = 0.012
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 72 gctggtgtttccaatgcaatcaataatggatacgagtcatgggg 115
||||| || || ||||| || ||||||||||| |||||||||||
Sbjct: 209 gctggggtatcnaatgccattaataatggatatgagtcatgggg 252
>gb|AW064806.1|AW064806 ST36A06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST36A06, mRNA sequence
Length = 596
Score = 42.1 bits (21), Expect = 0.012
Identities = 74/93 (79%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
||||| || ||||| ||||| ||||||||||||| | | || || | ||||| ||||||
Sbjct: 111 ttcggaaaactcttttttgcgttttgggtgattgtccatctttacnctttcctgaaaggt 170
Query: 183 ttggttgggaggcaaaacaggacaccgacaatt 215
||| | || | || ||||||||||| ||||||
Sbjct: 171 ttgatgggacgacagaacaggacacccacaatt 203
>gb|AL749837.1|AL749837 AL749837 AS Pinus pinaster cDNA clone AS01F10 similar to CELLULOSE
SYNTHASE, mRNA sequence
Length = 469
Score = 42.1 bits (21), Expect = 0.012
Identities = 63/78 (80%)
Strand = Plus / Minus
Query: 138 tttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggttgggaggcaa 197
||||| ||||||||||||| | | || || || ||||| ||||||||| | || | ||
Sbjct: 386 tttgcgttttgggtgattgtccatctttaccctttcctgaaaggtttgatgggacgacag 327
Query: 198 aacaggacaccgacaatt 215
||||||||||| ||||||
Sbjct: 326 aacaggacacccacaatt 309
>gb|AW697996.1|AW697996 NXNV_079_C07_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_079_C07 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 352
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 42 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 91
>gb|BG039685.1|BG039685 NXSI_102_H08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_102_H08 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 546
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 146 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 195
>gb|BQ695648.1|BQ695648 NXPV_030_H04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_030_H04 5' similar to Arabidopsis
thaliana sequence At5g17420 cellulose synthase catalytic
subunit (IRX3) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 491
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 95 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 144
>gb|BQ697774.1|BQ697774 NXPV_052_F10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_052_F10 5' similar to Arabidopsis
thaliana sequence At5g17420 cellulose synthase catalytic
subunit (IRX3) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 523
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 95 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 144
>gb|BQ703105.1|BQ703105 NXSI_136_D09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_136_D09 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 483
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 128 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 177
>gb|CD023932.1|CD023932 NXRV_018_G08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_018_G08 5' similar to Arabidopsis thaliana
sequence At5g05170 cellulose synthase catalytic subunit
(Ath-B) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 161
Score = 42.1 bits (21), Expect = 0.012
Identities = 63/78 (80%)
Strand = Plus / Plus
Query: 138 tttgcattttgggtgattgncnanctgtatcccttcctcaaaggtttggttgggaggcaa 197
||||| ||||||||||||| | | || || || ||||| ||||||||| | || | ||
Sbjct: 6 tttgcgttttgggtgattgtccatctttaccctttcctgaaaggtttgatgggacgacag 65
Query: 198 aacaggacaccgacaatt 215
||||||||||| ||||||
Sbjct: 66 aacaggacacccacaatt 83
>gb|DR060720.1|DR060720 RTNIT1_29_C08.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_29_C08_A029 5', mRNA sequence
Length = 789
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Minus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 713 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 664
>dbj|BD236020.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 3851
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 3204 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 3253
>gb|AY639654.1| Pinus radiata cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3911
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 3220 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 3269
>gb|AH014290.1|SEG_AY764673S Pinus taeda isolate 11 cellulose synthase genes, partial cds
Length = 1023
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 752 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 801
>gb|AY764674.1|AY764673S2 Pinus taeda isolate 11 cellulose synthase gene, partial cds
Length = 452
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 181 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 230
>gb|AH014291.1|SEG_AY764675S Pinus taeda isolate 16 cellulose synthase genes, partial cds
Length = 1023
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 752 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 801
>gb|AY764676.1|AY764675S2 Pinus taeda isolate 16 cellulose synthase gene, partial cds
Length = 452
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 181 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 230
>gb|AH014292.1|SEG_AY764677S Pinus taeda isolate 25 cellulose synthase genes, partial cds
Length = 1023
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 752 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 801
>gb|AY764678.1|AY764677S2 Pinus taeda isolate 25 cellulose synthase gene, partial cds
Length = 452
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 181 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 230
>gb|AH014293.1|SEG_AY764679S Pinus taeda isolate 7 cellulose synthase genes, partial cds
Length = 1023
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 752 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 801
>gb|AY764680.1|AY764679S2 Pinus taeda isolate 7 cellulose synthase gene, partial cds
Length = 452
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 181 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 230
>gb|AH014294.1|SEG_AY764681S Pinus taeda isolate 6 cellulose synthase genes, partial cds
Length = 1023
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 752 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 801
>gb|AY764682.1|AY764681S2 Pinus taeda isolate 6 cellulose synthase gene, partial cds
Length = 452
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 181 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 230
>gb|AH014295.1|SEG_AY764683S Pinus taeda isolate 4 cellulose synthase genes, partial cds
Length = 1023
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 752 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 801
>gb|AY764684.1|AY764683S2 Pinus taeda isolate 4 cellulose synthase gene, partial cds
Length = 452
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 181 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 230
>gb|AH014296.1|SEG_AY764685S Pinus taeda isolate 26 cellulose synthase genes, partial cds
Length = 1023
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 752 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 801
>gb|AY764686.1|AY764685S2 Pinus taeda isolate 26 cellulose synthase gene, partial cds
Length = 452
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 181 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 230
>gb|AH014297.1|SEG_AY764687S Pinus taeda isolate 9 cellulose synthase genes, partial cds
Length = 1023
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 752 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 801
>gb|AY764688.1|AY764687S2 Pinus taeda isolate 9 cellulose synthase gene, partial cds
Length = 452
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 181 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 230
>gb|AH014298.1|SEG_AY764689S Pinus taeda isolate 23 cellulose synthase genes, partial cds
Length = 1023
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 752 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 801
>gb|AY764690.1|AY764689S2 Pinus taeda isolate 23 cellulose synthase gene, partial cds
Length = 452
Score = 42.1 bits (21), Expect = 0.012
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 129 aagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaa 178
||||| ||||||||||| ||||| |||| | |||||||| ||||||||
Sbjct: 181 aagcttttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 230
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,989
Number of Sequences: 355925
Number of extensions: 28989
Number of successful extensions: 7706
Number of sequences better than 0.5: 115
Number of HSP's better than 0.5 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7565
Number of HSP's gapped (non-prelim): 133
length of query: 290
length of database: 217,277,237
effective HSP length: 18
effective length of query: 272
effective length of database: 210,870,587
effective search space: 57356799664
effective search space used: 57356799664
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)