BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD12g05.sg.3.2
(900 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG040217.1|BG040217 NXSI_109_H04_F NXSI (Nsf Xylem Side ... 48 6e-004
gb|CF385050.1|CF385050 RTDR1_1_A07.g1_A015 Loblolly pine ro... 48 6e-004
gb|CF474483.1|CF474483 RTWW2_9_E02.b1_A021 Well-watered lob... 48 6e-004
gb|CF474585.1|CF474585 RTWW2_9_E02.g1_A021 Well-watered lob... 48 6e-004
gb|CX651523.1|CX651523 COLD1_53_A12.b1_A029 Root cold Pinus... 48 6e-004
gb|CX712206.1|CX712206 RTPQ1_1_B12.b2_A032 Roots treated wi... 48 6e-004
gb|CX712282.1|CX712282 RTPQ1_1_B12.g1_A032 Roots treated wi... 48 6e-004
gb|DN445913.1|DN445913 EST941712 Sequencing ESTs from loblo... 48 6e-004
gb|DR014315.1|DR014315 HEAT1_24_F01.g1_A029 Root at 37 C fo... 48 6e-004
gb|DR178073.1|DR178073 RTMNUT1_9_D08.b1_A029 Roots minus mi... 48 6e-004
gb|DR178147.1|DR178147 RTMNUT1_9_D08.g1_A029 Roots minus mi... 48 6e-004
gb|DR180229.1|DR180229 RTMNUT1_27_F08.b1_A029 Roots minus m... 48 6e-004
gb|DR180307.1|DR180307 RTMNUT1_27_F08.g1_A029 Roots minus m... 48 6e-004
gb|DR692610.1|DR692610 EST1082698 Normalized pine embryo li... 48 6e-004
gb|DR694454.1|DR694454 EST1084546 Normalized pine embryo li... 48 6e-004
gb|DT638511.1|DT638511 EST1153442 Normalized pine embryo li... 48 6e-004
>gb|BG040217.1|BG040217 NXSI_109_H04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_109_H04 5' similar to Arabidopsis thaliana
sequence At1g20050 C-8,7 sterol isomerase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 545
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 382 gaagtttggaaagagtatagtaagggagactctaggtatg 421
||||||||||||||||| || ||||| ||||| |||||||
Sbjct: 173 gaagtttggaaagagtacagcaagggtgactcaaggtatg 212
>gb|CF385050.1|CF385050 RTDR1_1_A07.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_1_A07_A015 5', mRNA
sequence
Length = 770
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 382 gaagtttggaaagagtatagtaagggagactctaggtatg 421
||||||||||||||||| || ||||| ||||| |||||||
Sbjct: 504 gaagtttggaaagagtacagcaagggtgactcaaggtatg 543
>gb|CF474483.1|CF474483 RTWW2_9_E02.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_9_E02_A021 3', mRNA sequence
Length = 643
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 382 gaagtttggaaagagtatagtaagggagactctaggtatg 421
||||||||||||||||| || ||||| ||||| |||||||
Sbjct: 49 gaagtttggaaagagtacagcaagggtgactcaaggtatg 88
>gb|CF474585.1|CF474585 RTWW2_9_E02.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_9_E02_A021 5', mRNA sequence
Length = 687
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 382 gaagtttggaaagagtatagtaagggagactctaggtatg 421
||||||||||||||||| || ||||| ||||| |||||||
Sbjct: 308 gaagtttggaaagagtacagcaagggtgactcaaggtatg 347
>gb|CX651523.1|CX651523 COLD1_53_A12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_53_A12_A029 3', mRNA sequence
Length = 816
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 382 gaagtttggaaagagtatagtaagggagactctaggtatg 421
||||||||||||||||| || ||||| ||||| |||||||
Sbjct: 169 gaagtttggaaagagtacagcaagggtgactcaaggtatg 208
>gb|CX712206.1|CX712206 RTPQ1_1_B12.b2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_1_B12_A032 3', mRNA sequence
Length = 762
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 382 gaagtttggaaagagtatagtaagggagactctaggtatg 421
||||||||||||||||| || ||||| ||||| |||||||
Sbjct: 109 gaagtttggaaagagtacagcaagggtgactcaaggtatg 148
>gb|CX712282.1|CX712282 RTPQ1_1_B12.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_1_B12_A032 5', mRNA sequence
Length = 870
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 382 gaagtttggaaagagtatagtaagggagactctaggtatg 421
||||||||||||||||| || ||||| ||||| |||||||
Sbjct: 380 gaagtttggaaagagtacagcaagggtgactcaaggtatg 419
>gb|DN445913.1|DN445913 EST941712 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIA443 5' end, mRNA sequence
Length = 851
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 382 gaagtttggaaagagtatagtaagggagactctaggtatg 421
||||||||||||||||| || ||||| ||||| |||||||
Sbjct: 528 gaagtttggaaagagtacagcaagggtgactcaaggtatg 567
>gb|DR014315.1|DR014315 HEAT1_24_F01.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_24_F01_A029 5', mRNA sequence
Length = 887
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 382 gaagtttggaaagagtatagtaagggagactctaggtatg 421
||||||||||||||||| || ||||| ||||| |||||||
Sbjct: 448 gaagtttggaaagagtacagcaagggtgactcaaggtatg 409
>gb|DR178073.1|DR178073 RTMNUT1_9_D08.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_9_D08_A029 3', mRNA sequence
Length = 732
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 382 gaagtttggaaagagtatagtaagggagactctaggtatg 421
||||||||||||||||| || ||||| ||||| |||||||
Sbjct: 264 gaagtttggaaagagtacagcaagggtgactcaaggtatg 303
>gb|DR178147.1|DR178147 RTMNUT1_9_D08.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_9_D08_A029 5', mRNA sequence
Length = 645
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 382 gaagtttggaaagagtatagtaagggagactctaggtatg 421
||||||||||||||||| || ||||| ||||| |||||||
Sbjct: 353 gaagtttggaaagagtacagcaagggtgactcaaggtatg 392
>gb|DR180229.1|DR180229 RTMNUT1_27_F08.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_27_F08_A029 3', mRNA sequence
Length = 878
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 382 gaagtttggaaagagtatagtaagggagactctaggtatg 421
||||||||||||||||| || ||||| ||||| |||||||
Sbjct: 359 gaagtttggaaagagtacagcaagggtgactcaaggtatg 398
>gb|DR180307.1|DR180307 RTMNUT1_27_F08.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_27_F08_A029 5', mRNA sequence
Length = 660
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 382 gaagtttggaaagagtatagtaagggagactctaggtatg 421
||||||||||||||||| || ||||| ||||| |||||||
Sbjct: 387 gaagtttggaaagagtacagcaagggtgactcaaggtatg 426
>gb|DR692610.1|DR692610 EST1082698 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADO20 3' end, mRNA sequence
Length = 734
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 382 gaagtttggaaagagtatagtaagggagactctaggtatg 421
||||||||||||||||| || ||||| ||||| |||||||
Sbjct: 463 gaagtttggaaagagtacagcaagggtgactcaaggtatg 502
>gb|DR694454.1|DR694454 EST1084546 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEC66 3' end, mRNA sequence
Length = 804
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 382 gaagtttggaaagagtatagtaagggagactctaggtatg 421
||||||||||||||||| || ||||| ||||| |||||||
Sbjct: 353 gaagtttggaaagagtacagcaagggtgactcaaggtatg 392
>gb|DT638511.1|DT638511 EST1153442 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHG08 3' end, mRNA sequence
Length = 817
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 382 gaagtttggaaagagtatagtaagggagactctaggtatg 421
||||||||||||||||| || ||||| ||||| |||||||
Sbjct: 361 gaagtttggaaagagtacagcaagggtgactcaaggtatg 400
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 91,926
Number of Sequences: 355925
Number of extensions: 91926
Number of successful extensions: 22411
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22382
Number of HSP's gapped (non-prelim): 29
length of query: 900
length of database: 217,277,237
effective HSP length: 19
effective length of query: 881
effective length of database: 210,514,662
effective search space: 185463417222
effective search space used: 185463417222
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)