BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= L46398.2.1
(1263 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U42400.1|PRU42400 Pinus radiata putative MADS-box family... 78 1e-012
emb|Y09611.1|PRMADS1 P.resinosa mRNA for MADS-box protein 70 2e-010
gb|CX645838.1|CX645838 COLD1_5_D01.g1_A029 Root cold Pinus ... 66 4e-009
gb|DR177222.1|DR177222 RTMNUT1_3_H10.g1_A029 Roots minus mi... 66 4e-009
gb|U90346.1|PRU90346 Pinus radiata putative MADS box transc... 66 4e-009
gb|AW010398.1|AW010398 ST06D02 Pine TriplEx shoot tip libra... 62 6e-008
gb|AW010611.1|AW010611 ST08G08 Pine TriplEx shoot tip libra... 62 6e-008
gb|BQ290846.1|BQ290846 NXRV050_D03_F NXRV (Nsf Xylem Root w... 62 6e-008
gb|BQ654531.1|BQ654531 NXRV081_H04_F NXRV (Nsf Xylem Root w... 62 6e-008
gb|BM134188.1|BM134188 NXLV_017_H01_F NXLV (Nsf Xylem Late ... 60 2e-007
gb|CF386447.1|CF386447 RTDR1_14_B10.g1_A015 Loblolly pine r... 58 9e-007
gb|CO361066.1|CO361066 NDL2_2_B04.g1_A029 Needles control 2... 58 9e-007
gb|U42399.1|PRU42399 Pinus radiata putative MADS-box family... 58 9e-007
gb|AW290406.1|AW290406 NXNV019H03F Nsf Xylem Normal wood Ve... 46 0.004
gb|BG318835.1|BG318835 NXPV_020_D12_F NXPV (Nsf Xylem Plani... 46 0.004
gb|BQ696809.1|BQ696809 NXPV_045_E02_F NXPV (Nsf Xylem Plani... 46 0.004
gb|CD027064.1|CD027064 NXNV019H03 Nsf Xylem Normal wood Ver... 46 0.004
gb|CO163263.1|CO163263 FLD1_40_B04.g1_A029 Root flooded Pin... 46 0.004
gb|CO175129.1|CO175129 NDL1_48_D06.g1_A029 Needles control ... 46 0.004
gb|CO364965.1|CO364965 RTK1_22_G09.g1_A029 Roots minus pota... 46 0.004
gb|CV033251.1|CV033251 RTNACL1_33_G03.b1_A029 Roots plus ad... 46 0.004
gb|CX713480.1|CX713480 RTPQ1_9_E04.g1_A032 Roots treated wi... 46 0.004
gb|CX713558.1|CX713558 RTPQ1_10_E02.g1_A032 Roots treated w... 46 0.004
gb|DR079072.1|DR079072 RTFEPL1_8_G11.g1_A029 Roots plus add... 46 0.004
gb|DR090622.1|DR090622 RTAL1_16_G11.b1_A029 Roots plus adde... 46 0.004
gb|DR090702.1|DR090702 RTAL1_16_G11.g1_A029 Roots plus adde... 46 0.004
gb|CF394057.1|CF394057 RTDS2_3_D04.b1_A021 Drought-stressed... 44 0.014
gb|CO200411.1|CO200411 GEO2_7_G03.b1_A032 Root gravitropism... 44 0.014
gb|CO200495.1|CO200495 GEO2_7_G03.g1_A032 Root gravitropism... 44 0.014
gb|CF388137.1|CF388137 RTDR2_1_D05.b1_A021 Loblolly pine ro... 40 0.22
gb|CF388230.1|CF388230 RTDR2_1_D05.g1_A021 Loblolly pine ro... 40 0.22
gb|CF389852.1|CF389852 RTDR2_11_B08.b1_A021 Loblolly pine r... 40 0.22
gb|CF389963.1|CF389963 RTDR2_11_B08.g1_A021 Loblolly pine r... 40 0.22
gb|CF476374.1|CF476374 RTWW2_22_E12.g1_A021 Well-watered lo... 40 0.22
gb|CF670172.1|CF670172 RTCNT1_48_B11.g1_A029 Root control P... 40 0.22
gb|CO161503.1|CO161503 FLD1_29_F09.b1_A029 Root flooded Pin... 40 0.22
gb|CO161575.1|CO161575 FLD1_29_F09.g1_A029 Root flooded Pin... 40 0.22
gb|CX713803.1|CX713803 RTPQ1_13_F12.b1_A032 Roots treated w... 40 0.22
gb|DR013883.1|DR013883 HEAT1_22_D05.b1_A029 Root at 37 C fo... 40 0.22
>gb|U42400.1|PRU42400 Pinus radiata putative MADS-box family transcription factor
(PrMADS2) mRNA, complete cds
Length = 1064
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 214 cgcgtcgagctgaagcggatcgagaacaagatcaaccgccaggtcac 260
|||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 107 cgcgtcgagctgaagcggatcgagaataagattaaccgccaggtcac 153
>emb|Y09611.1|PRMADS1 P.resinosa mRNA for MADS-box protein
Length = 1073
Score = 69.9 bits (35), Expect = 2e-010
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 214 cgcgtcgagctgaagcggatcgagaacaagatcaaccgccaggtcac 260
|||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 88 cgcgtcgagctgaagcggatcgagaataagattaaccgtcaggtcac 134
>gb|CX645838.1|CX645838 COLD1_5_D01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_5_D01_A029 5', mRNA sequence
Length = 705
Score = 65.9 bits (33), Expect = 4e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 268 aagcgccgcaacggcctgctcaagaaggcctacgagctctccgtgctctgcga 320
|||||||||||||| ||||| ||||| || ||||||||||| |||||||||||
Sbjct: 233 aagcgccgcaacgggctgctgaagaaagcttacgagctctcggtgctctgcga 285
>gb|DR177222.1|DR177222 RTMNUT1_3_H10.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_3_H10_A029 5', mRNA sequence
Length = 770
Score = 65.9 bits (33), Expect = 4e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 268 aagcgccgcaacggcctgctcaagaaggcctacgagctctccgtgctctgcga 320
|||||||||||||| ||||| ||||| || ||||||||||| |||||||||||
Sbjct: 246 aagcgccgcaacgggctgctgaagaaagcttacgagctctcggtgctctgcga 298
>gb|U90346.1|PRU90346 Pinus radiata putative MADS box transcription factor PrMADS5 mRNA,
complete cds
Length = 1301
Score = 65.9 bits (33), Expect = 4e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 268 aagcgccgcaacggcctgctcaagaaggcctacgagctctccgtgctctgcga 320
|||||||||||||| ||||| ||||| || ||||||||||| |||||||||||
Sbjct: 235 aagcgccgcaacgggctgctgaagaaagcttacgagctctcggtgctctgcga 287
>gb|AW010398.1|AW010398 ST06D02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST06D02, mRNA sequence
Length = 647
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 265 tccaagcgccgcaacggcctgctcaagaaggcctacgagctctccgtgctctgcgacgcc 324
||||||||||| ||||| ||||| |||||||| |||||||| || ||||| ||||| |||
Sbjct: 87 tccaagcgccggaacggactgctgaagaaggcgtacgagctatcagtgctgtgcgatgcc 146
Query: 325 gaggtcgcgct 335
|| || |||||
Sbjct: 147 gaagtggcgct 157
>gb|AW010611.1|AW010611 ST08G08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST08G08, mRNA sequence
Length = 927
Score = 61.9 bits (31), Expect = 6e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 270 gcgccgcaacggcctgctcaagaaggcctacgagctctccgtgctctgcga 320
|||||||||||| ||||| ||||| || ||||||||||| |||||||||||
Sbjct: 169 gcgccgcaacgggctgctgaagaaagcttacgagctctcggtgctctgcga 219
>gb|BQ290846.1|BQ290846 NXRV050_D03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV050_D03 5' similar to Arabidopsis thaliana
sequence At5g15800 transcription factor (AGL2) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 546
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 265 tccaagcgccgcaacggcctgctcaagaaggcctacgagctctccgtgctctgcgacgcc 324
||||||||||| ||||| ||||| |||||||| |||||||| || ||||| ||||| |||
Sbjct: 148 tccaagcgccggaacggactgctgaagaaggcgtacgagctatcagtgctgtgcgatgcc 207
Query: 325 gaggtcgcgct 335
|| || |||||
Sbjct: 208 gaagtggcgct 218
>gb|BQ654531.1|BQ654531 NXRV081_H04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV081_H04 5' similar to Arabidopsis thaliana
sequence At5g15800 transcription factor (AGL2) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 436
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 265 tccaagcgccgcaacggcctgctcaagaaggcctacgagctctccgtgctctgcgacgcc 324
||||||||||| ||||| ||||| |||||||| |||||||| || ||||| ||||| |||
Sbjct: 125 tccaagcgccggaacggactgctgaagaaggcgtacgagctatcagtgctgtgcgatgcc 184
Query: 325 gaggtcgcgct 335
|| || |||||
Sbjct: 185 gaagtggcgct 195
>gb|BM134188.1|BM134188 NXLV_017_H01_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_017_H01 5' similar to Arabidopsis thaliana
sequence At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 508
Score = 60.0 bits (30), Expect = 2e-007
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 268 aagcgccgcaacggcctgctcaagaaggcctacgagctctccgtgctctgcga 320
|||||||||||||| ||||| ||||| || |||| |||||| |||||||||||
Sbjct: 341 aagcgccgcaacgggctgctgaagaaagcttacgngctctcggtgctctgcga 393
>gb|CF386447.1|CF386447 RTDR1_14_B10.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_14_B10_A015 5', mRNA
sequence
Length = 821
Score = 58.0 bits (29), Expect = 9e-007
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 268 aagcgccgcaacggcctgctcaagaaggcctacgagctctccgtgctctgcga 320
|||||||||||||| ||||| ||||| || || |||||||| |||||||||||
Sbjct: 298 aagcgccgcaacgggctgctgaagaaagcttaggagctctcggtgctctgcga 350
>gb|CO361066.1|CO361066 NDL2_2_B04.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_2_B04_A029 5', mRNA sequence
Length = 840
Score = 58.0 bits (29), Expect = 9e-007
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 268 aagcgccgcaacggcctgctcaagaaggcctacgagctctccgtgctctgcga 320
|||||||||||||| ||||| ||||| || || |||||||| |||||||||||
Sbjct: 214 aagcgccgcaacgggctgctgaagaaagcttaggagctctcggtgctctgcga 266
>gb|U42399.1|PRU42399 Pinus radiata putative MADS-box family transcription factor
(PrMADS1) mRNA, complete cds
Length = 1007
Score = 58.0 bits (29), Expect = 9e-007
Identities = 77/93 (82%)
Strand = Plus / Plus
Query: 286 ctcaagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatcttc 345
|||||||| || || |||||||| || ||||| || || ||||| ||||||||||| |||
Sbjct: 105 ctcaagaaagcttatgagctctctgttctctgtgatgctgaggttgcgctcatcattttc 164
Query: 346 tccggccgcggcaagctctacgagttcggcagc 378
||| ||| ||||||||||| || ||| |||||
Sbjct: 165 tccaaccgtggcaagctctatgaattctgcagc 197
>gb|AW290406.1|AW290406 NXNV019H03F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV019H03 5', mRNA sequence
Length = 464
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 284 tgctcaagaaggcctacgagctctccgtgctctgcgacgccga 326
|||||||||| || |||||||| || ||||||||||| |||||
Sbjct: 269 tgctcaagaaagcttacgagctgtcggtgctctgcgatgccga 311
>gb|BG318835.1|BG318835 NXPV_020_D12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_020_D12 5' similar to Arabidopsis
thaliana sequence At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 527
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 284 tgctcaagaaggcctacgagctctccgtgctctgcgacgccga 326
|||||||||| || |||||||| || ||||||||||| |||||
Sbjct: 260 tgctcaagaaagcttacgagctgtcggtgctctgcgatgccga 302
>gb|BQ696809.1|BQ696809 NXPV_045_E02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_045_E02 5' similar to Arabidopsis
thaliana sequence At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 540
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 284 tgctcaagaaggcctacgagctctccgtgctctgcgacgccga 326
|||||||||| || |||||||| || ||||||||||| |||||
Sbjct: 260 tgctcaagaaagcttacgagctgtcggtgctctgcgatgccga 302
>gb|CD027064.1|CD027064 NXNV019H03 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV019H03 5' similar to Arabidopsis thaliana sequence
At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 464
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 284 tgctcaagaaggcctacgagctctccgtgctctgcgacgccga 326
|||||||||| || |||||||| || ||||||||||| |||||
Sbjct: 269 tgctcaagaaagcttacgagctgtcggtgctctgcgatgccga 311
>gb|CO163263.1|CO163263 FLD1_40_B04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_40_B04_A029 5', mRNA sequence
Length = 841
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 284 tgctcaagaaggcctacgagctctccgtgctctgcgacgccga 326
|||||||||| || |||||||| || ||||||||||| |||||
Sbjct: 126 tgctcaagaaagcttacgagctgtcggtgctctgcgatgccga 168
>gb|CO175129.1|CO175129 NDL1_48_D06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_48_D06_A029 5', mRNA sequence
Length = 804
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 284 tgctcaagaaggcctacgagctctccgtgctctgcgacgccga 326
|||||||||| || |||||||| || ||||||||||| |||||
Sbjct: 42 tgctcaagaaagcttacgagctgtcggtgctctgcgatgccga 84
>gb|CO364965.1|CO364965 RTK1_22_G09.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_G09_A029 5', mRNA sequence
Length = 833
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 284 tgctcaagaaggcctacgagctctccgtgctctgcgacgccga 326
|||||||||| || |||||||| || ||||||||||| |||||
Sbjct: 259 tgctcaagaaagcttacgagctgtcggtgctctgcgatgccga 301
>gb|CV033251.1|CV033251 RTNACL1_33_G03.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_33_G03_A029 3', mRNA sequence
Length = 839
Score = 46.1 bits (23), Expect = 0.004
Identities = 70/86 (81%)
Strand = Plus / Plus
Query: 262 ttctccaagcgccgcaacggcctgctcaagaaggcctacgagctctccgtgctctgcgac 321
||||||| ||| || ||||| ||| | ||||| || || ||||| || ||||| ||||||
Sbjct: 13 ttctccacgcgtcgaaacggtctgttgaagaaagcgtatgagctgtctgtgctntgcgac 72
Query: 322 gccgaggtcgcgctcatcatcttctc 347
|| || |||||| ||||| |||||||
Sbjct: 73 gcagaagtcgcggtcatcgtcttctc 98
>gb|CX713480.1|CX713480 RTPQ1_9_E04.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_9_E04_A032 5', mRNA sequence
Length = 437
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 284 tgctcaagaaggcctacgagctctccgtgctctgcgacgccga 326
|||||||||| || |||||||| || ||||||||||| |||||
Sbjct: 151 tgctcaagaaagcttacgagctgtcggtgctctgcgatgccga 193
>gb|CX713558.1|CX713558 RTPQ1_10_E02.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_10_E02_A032 5', mRNA sequence
Length = 513
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 284 tgctcaagaaggcctacgagctctccgtgctctgcgacgccga 326
|||||||||| || |||||||| || ||||||||||| |||||
Sbjct: 174 tgctcaagaaagcttacgagctgtcggtgctctgcgatgccga 216
>gb|DR079072.1|DR079072 RTFEPL1_8_G11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_8_G11_A029 5', mRNA sequence
Length = 829
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 284 tgctcaagaaggcctacgagctctccgtgctctgcgacgccga 326
|||||||||| || |||||||| || ||||||||||| |||||
Sbjct: 228 tgctcaagaaagcttacgagctgtcggtgctctgcgatgccga 270
>gb|DR090622.1|DR090622 RTAL1_16_G11.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_16_G11_A029 3', mRNA sequence
Length = 859
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 284 tgctcaagaaggcctacgagctctccgtgctctgcgacgccga 326
|||||||||| || |||||||| || ||||||||||| |||||
Sbjct: 39 tgctcaagaaagcttacgagctgtcggtgctctgcgatgccga 81
>gb|DR090702.1|DR090702 RTAL1_16_G11.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_16_G11_A029 5', mRNA sequence
Length = 808
Score = 46.1 bits (23), Expect = 0.004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 284 tgctcaagaaggcctacgagctctccgtgctctgcgacgccga 326
|||||||||| || |||||||| || ||||||||||| |||||
Sbjct: 331 tgctcaagaaagcttacgagctgtcggtgctctgcgatgccga 373
>gb|CF394057.1|CF394057 RTDS2_3_D04.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_3_D04_A021 3', mRNA sequence
Length = 611
Score = 44.1 bits (22), Expect = 0.014
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 253 caggtcaccttctccaagcgccgcaacggcctgctcaagaaggcctacgagctctccgtg 312
||||| ||||||| ||||||||| ||| ||| | ||||| ||||||||||| || |||
Sbjct: 426 caggtgaccttctgcaagcgccgaggcggtctgatgaagaaagcctacgagctttcagtg 367
Query: 313 ctctgcgacgccgaggtcgcgctcat 338
|| ||||| || || || ||||||||
Sbjct: 366 ctgtgcgatgcagatgtagcgctcat 341
>gb|CO200411.1|CO200411 GEO2_7_G03.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_7_G03_A032 3', mRNA sequence
Length = 860
Score = 44.1 bits (22), Expect = 0.014
Identities = 70/86 (81%)
Strand = Plus / Plus
Query: 253 caggtcaccttctccaagcgccgcaacggcctgctcaagaaggcctacgagctctccgtg 312
||||| ||||||| ||||||||| ||| ||| | ||||| ||||||||||| || |||
Sbjct: 215 caggtgaccttctgcaagcgccgaggcggtctgatgaagaaagcctacgagctttcagtg 274
Query: 313 ctctgcgacgccgaggtcgcgctcat 338
|| ||||| || || || ||||||||
Sbjct: 275 ctgtgcgatgcagatgtagcgctcat 300
>gb|CO200495.1|CO200495 GEO2_7_G03.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_7_G03_A032 5', mRNA sequence
Length = 820
Score = 44.1 bits (22), Expect = 0.014
Identities = 70/86 (81%)
Strand = Plus / Plus
Query: 253 caggtcaccttctccaagcgccgcaacggcctgctcaagaaggcctacgagctctccgtg 312
||||| ||||||| ||||||||| ||| ||| | ||||| ||||||||||| || |||
Sbjct: 458 caggtgaccttctgcaagcgccgaggcggtctgatgaagaaagcctacgagctttcagtg 517
Query: 313 ctctgcgacgccgaggtcgcgctcat 338
|| ||||| || || || ||||||||
Sbjct: 518 ctgtgcgatgcagatgtagcgctcat 543
>gb|CF388137.1|CF388137 RTDR2_1_D05.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_1_D05_A021 3', mRNA
sequence
Length = 532
Score = 40.1 bits (20), Expect = 0.22
Identities = 89/112 (79%)
Strand = Plus / Minus
Query: 262 ttctccaagcgccgcaacggcctgctcaagaaggcctacgagctctccgtgctctgcgac 321
||||||||||| || || || |||| |||||||| || || || || || || |||||
Sbjct: 373 ttctccaagcgtcgaaatgggttgctaaagaaggcgtatgaactgtctgttctttgcgat 314
Query: 322 gccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagttcg 373
|| ||||| || |||||||||||||| ||| || ||||| ||||||||||
Sbjct: 313 gcggaggtggcagtcatcatcttctccaaccgtggaaagctgtacgagttcg 262
>gb|CF388230.1|CF388230 RTDR2_1_D05.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_1_D05_A021 5', mRNA
sequence
Length = 751
Score = 40.1 bits (20), Expect = 0.22
Identities = 89/112 (79%)
Strand = Plus / Minus
Query: 262 ttctccaagcgccgcaacggcctgctcaagaaggcctacgagctctccgtgctctgcgac 321
||||||||||| || || || |||| |||||||| || || || || || || |||||
Sbjct: 740 ttctccaagcgtcgaaatgggttgctaaagaaggcgtatgaactgtctgttctttgcgat 681
Query: 322 gccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagttcg 373
|| ||||| || |||||||||||||| ||| || ||||| ||||||||||
Sbjct: 680 gcggaggtggcagtcatcatcttctccaaccgtggaaagctgtacgagttcg 629
>gb|CF389852.1|CF389852 RTDR2_11_B08.b1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_11_B08_A021 3', mRNA
sequence
Length = 685
Score = 40.1 bits (20), Expect = 0.22
Identities = 89/112 (79%)
Strand = Plus / Minus
Query: 262 ttctccaagcgccgcaacggcctgctcaagaaggcctacgagctctccgtgctctgcgac 321
||||||||||| || || || |||| |||||||| || || || || || || |||||
Sbjct: 436 ttctccaagcgtcgaaatgggttgctaaagaaggcgtatgaactgtctgttctttgcgat 377
Query: 322 gccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagttcg 373
|| ||||| || |||||||||||||| ||| || ||||| ||||||||||
Sbjct: 376 gcggaggtggcagtcatcatcttctccaaccgtggaaagctgtacgagttcg 325
>gb|CF389963.1|CF389963 RTDR2_11_B08.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_11_B08_A021 5', mRNA
sequence
Length = 791
Score = 40.1 bits (20), Expect = 0.22
Identities = 89/112 (79%)
Strand = Plus / Minus
Query: 262 ttctccaagcgccgcaacggcctgctcaagaaggcctacgagctctccgtgctctgcgac 321
||||||||||| || || || |||| |||||||| || || || || || || |||||
Sbjct: 719 ttctccaagcgtcgaaatgggttgctaaagaaggcgtatgaactgtctgttctttgcgat 660
Query: 322 gccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagttcg 373
|| ||||| || |||||||||||||| ||| || ||||| ||||||||||
Sbjct: 659 gcggaggtggcagtcatcatcttctccaaccgtggaaagctgtacgagttcg 608
>gb|CF476374.1|CF476374 RTWW2_22_E12.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_22_E12_A021 5', mRNA sequence
Length = 733
Score = 40.1 bits (20), Expect = 0.22
Identities = 65/80 (81%)
Strand = Plus / Plus
Query: 289 aagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctcc 348
||||| ||||| ||||| || ||||| ||||| || ||||| ||||||||| | || ||
Sbjct: 495 aagaaagcctatgagctttcagtgctgtgcgatgcagaggtggcgctcatcgttttttct 554
Query: 349 ggccgcggcaagctctacga 368
||| | || |||||||||||
Sbjct: 555 ggcggagggaagctctacga 574
>gb|CF670172.1|CF670172 RTCNT1_48_B11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_48_B11_A029 5', mRNA sequence
Length = 788
Score = 40.1 bits (20), Expect = 0.22
Identities = 65/80 (81%)
Strand = Plus / Plus
Query: 289 aagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctcc 348
||||| ||||| ||||| || ||||| ||||| || ||||| ||||||||| | || ||
Sbjct: 131 aagaaagcctatgagctttcagtgctgtgcgatgcagaggtggcgctcatcgttttttct 190
Query: 349 ggccgcggcaagctctacga 368
||| | || |||||||||||
Sbjct: 191 ggcggagggaagctctacga 210
>gb|CO161503.1|CO161503 FLD1_29_F09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_29_F09_A029 3', mRNA sequence
Length = 896
Score = 40.1 bits (20), Expect = 0.22
Identities = 89/112 (79%)
Strand = Plus / Plus
Query: 262 ttctccaagcgccgcaacggcctgctcaagaaggcctacgagctctccgtgctctgcgac 321
||||||||||| || || || |||| |||||||| || || || || || || |||||
Sbjct: 247 ttctccaagcgtcgaaatgggttgctaaagaaggcgtatgaactgtctgttctttgcgat 306
Query: 322 gccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagttcg 373
|| ||||| || |||||||||||||| ||| || ||||| ||||||||||
Sbjct: 307 gcggaggtggcagtcatcatcttctccaaccgtggaaagctgtacgagttcg 358
>gb|CO161575.1|CO161575 FLD1_29_F09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_29_F09_A029 5', mRNA sequence
Length = 909
Score = 40.1 bits (20), Expect = 0.22
Identities = 89/112 (79%)
Strand = Plus / Plus
Query: 262 ttctccaagcgccgcaacggcctgctcaagaaggcctacgagctctccgtgctctgcgac 321
||||||||||| || || || |||| |||||||| || || || || || || |||||
Sbjct: 250 ttctccaagcgtcgaaatgggttgctaaagaaggcgtatgaactgtctgttctttgcgat 309
Query: 322 gccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagttcg 373
|| ||||| || |||||||||||||| ||| || ||||| ||||||||||
Sbjct: 310 gcggaggtggcagtcatcatcttctccaaccgtggaaagctgtacgagttcg 361
>gb|CX713803.1|CX713803 RTPQ1_13_F12.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_13_F12_A032 3', mRNA sequence
Length = 586
Score = 40.1 bits (20), Expect = 0.22
Identities = 89/112 (79%)
Strand = Plus / Minus
Query: 262 ttctccaagcgccgcaacggcctgctcaagaaggcctacgagctctccgtgctctgcgac 321
||||||||||| || || || |||| |||||||| || || || || || || |||||
Sbjct: 422 ttctccaagcgtcgaaatgggttgctaaagaaggcgtatgaactgtctgttctttgcgat 363
Query: 322 gccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagttcg 373
|| ||||| || |||||||||||||| ||| || ||||| ||||||||||
Sbjct: 362 gcggaggtggcagtcatcatcttctccaaccgtggaaagctgtacgagttcg 311
>gb|DR013883.1|DR013883 HEAT1_22_D05.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_22_D05_A029 3', mRNA sequence
Length = 705
Score = 40.1 bits (20), Expect = 0.22
Identities = 89/112 (79%)
Strand = Plus / Minus
Query: 262 ttctccaagcgccgcaacggcctgctcaagaaggcctacgagctctccgtgctctgcgac 321
||||||||||| || || || |||| |||||||| || || || || || || |||||
Sbjct: 501 ttctccaagcgtcgaaatgggttgctaaagaaggcgtatgaactgtctgttctttgcgat 442
Query: 322 gccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagttcg 373
|| ||||| || |||||||||||||| ||| || ||||| ||||||||||
Sbjct: 441 gcggaggtggcagtcatcatcttctccaaccgtggaaagctgtacgagttcg 390
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 138,723
Number of Sequences: 355925
Number of extensions: 138723
Number of successful extensions: 37032
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36967
Number of HSP's gapped (non-prelim): 65
length of query: 1263
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1244
effective length of database: 210,514,662
effective search space: 261880239528
effective search space used: 261880239528
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)