BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= L20621.2.1
(1220 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO167552.1|CO167552 FLD1_69_D09.g1_A029 Root flooded Pin... 44 0.013
gb|CO167562.1|CO167562 FLD1_69_E09.g1_A029 Root flooded Pin... 44 0.013
gb|CV034130.1|CV034130 RTNACL1_38_H03.g1_A029 Roots plus ad... 44 0.013
gb|DN462123.1|DN462123 EST957922 Sequencing ESTs from loblo... 44 0.013
gb|DR685198.1|DR685198 EST1075275 Normalized pine embryo li... 44 0.013
gb|DR686396.1|DR686396 EST1076474 Normalized pine embryo li... 44 0.013
gb|DR694783.1|DR694783 EST1084875 Normalized pine embryo li... 44 0.013
gb|DT627039.1|DT627039 EST1160115 Sequencing ESTs from lobl... 44 0.013
gb|CO199988.1|CO199988 GEO2_4_F06.g1_A032 Root gravitropism... 42 0.053
gb|AF441556.1| Pinus taeda PtTX4101 microsatellite sequence 42 0.053
gb|AW226133.1|AW226133 ST77G01 Pine TriplEx shoot tip libra... 40 0.21
gb|AL751291.1|AL751291 AL751291 RS Pinus pinaster cDNA clon... 40 0.21
gb|CF390789.1|CF390789 RTDR2_17_A11.g1_A021 Loblolly pine r... 40 0.21
gb|CF397912.1|CF397912 RTDS3_23_H05.g1_A022 Drought-stresse... 40 0.21
gb|BX679011.1|BX679011 BX679011 RS Pinus pinaster cDNA clon... 40 0.21
gb|BX681370.1|BX681370 BX681370 RS Pinus pinaster cDNA clon... 40 0.21
gb|CO166850.1|CO166850 FLD1_65_A09.b1_A029 Root flooded Pin... 40 0.21
gb|CO200202.1|CO200202 GEO2_6_B08.b1_A032 Root gravitropism... 40 0.21
gb|CO364144.1|CO364144 RTK1_14_A07.b1_A029 Roots minus pota... 40 0.21
gb|CO364223.1|CO364223 RTK1_14_A07.g1_A029 Roots minus pota... 40 0.21
gb|CO369079.1|CO369079 RTK1_44_G01.g1_A029 Roots minus pota... 40 0.21
gb|CO370324.1|CO370324 RTK1_67_D08.b1_A029 Roots minus pota... 40 0.21
gb|CV031609.1|CV031609 RTNACL1_2_D04.g1_A029 Roots plus add... 40 0.21
gb|CV035021.1|CV035021 RTNACL1_13_D07.b1_A029 Roots plus ad... 40 0.21
gb|CV134467.1|CV134467 EST845676 Sequencing ESTs from loblo... 40 0.21
gb|CV144675.1|CV144675 EST855884 Sequencing ESTs from loblo... 40 0.21
gb|CV147532.1|CV147532 EST858741 Sequencing ESTs from loblo... 40 0.21
gb|CX713182.1|CX713182 RTPQ1_7_B05.g1_A032 Roots treated wi... 40 0.21
gb|DN450052.1|DN450052 EST945851 Sequencing ESTs from loblo... 40 0.21
gb|DR048742.1|DR048742 RTBOR1_11_A06.b1_A029 Roots plus add... 40 0.21
gb|DR048816.1|DR048816 RTBOR1_11_A06.g1_A029 Roots plus add... 40 0.21
gb|DR068471.1|DR068471 RTDK1_1_B12.b1_A029 Roots, dark Pinu... 40 0.21
gb|DR068622.1|DR068622 RTDK1_1_H06.g1_A029 Roots, dark Pinu... 40 0.21
gb|DR088834.1|DR088834 RTAL1_5_A03.b1_A029 Roots plus added... 40 0.21
gb|DR385128.1|DR385128 RTHG1_6_G01.g1_A029 Roots plus added... 40 0.21
gb|DR388641.1|DR388641 RTHG1_29_B12.g1_A029 Roots plus adde... 40 0.21
gb|DR686105.1|DR686105 EST1076183 Normalized pine embryo li... 40 0.21
gb|DR744325.1|DR744325 RTCU1_21_F02.g1_A029 Roots plus adde... 40 0.21
gb|DT624585.1|DT624585 EST1158920 Sequencing ESTs from lobl... 40 0.21
gb|DT624907.1|DT624907 EST1159182 Sequencing ESTs from lobl... 40 0.21
gb|DT633495.1|DT633495 EST1148426 Normalized pine embryo li... 40 0.21
gb|AF335094.1| Pinus taeda clone PtTX4177 microsatellite se... 40 0.21
>gb|CO167552.1|CO167552 FLD1_69_D09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_69_D09_A029 5', mRNA sequence
Length = 740
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 872 agacctcgacctcgacctcgac 893
||||||||||||||||||||||
Sbjct: 182 agacctcgacctcgacctcgac 161
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 873 gacctcgacctcgacctcgac 893
|||||||||||||||||||||
Sbjct: 175 gacctcgacctcgacctcgac 155
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 873 gacctcgacctcgacctcgac 893
|||||||||||||||||||||
Sbjct: 169 gacctcgacctcgacctcgac 149
>gb|CO167562.1|CO167562 FLD1_69_E09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_69_E09_A029 5', mRNA sequence
Length = 710
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 872 agacctcgacctcgacctcgac 893
||||||||||||||||||||||
Sbjct: 184 agacctcgacctcgacctcgac 163
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 873 gacctcgacctcgacctcgac 893
|||||||||||||||||||||
Sbjct: 177 gacctcgacctcgacctcgac 157
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 873 gacctcgacctcgacctcgac 893
|||||||||||||||||||||
Sbjct: 171 gacctcgacctcgacctcgac 151
>gb|CV034130.1|CV034130 RTNACL1_38_H03.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_38_H03_A029 5', mRNA sequence
Length = 698
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 872 agacctcgacctcgacctcgac 893
||||||||||||||||||||||
Sbjct: 134 agacctcgacctcgacctcgac 113
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 873 gacctcgacctcgacctcgac 893
|||||||||||||||||||||
Sbjct: 127 gacctcgacctcgacctcgac 107
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 873 gacctcgacctcgacctcgac 893
|||||||||||||||||||||
Sbjct: 121 gacctcgacctcgacctcgac 101
>gb|DN462123.1|DN462123 EST957922 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIII60 5' end, mRNA sequence
Length = 851
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 872 agacctcgacctcgacctcgac 893
||||||||||||||||||||||
Sbjct: 171 agacctcgacctcgacctcgac 150
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 873 gacctcgacctcgacctcgac 893
|||||||||||||||||||||
Sbjct: 164 gacctcgacctcgacctcgac 144
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 873 gacctcgacctcgacctcgac 893
|||||||||||||||||||||
Sbjct: 158 gacctcgacctcgacctcgac 138
>gb|DR685198.1|DR685198 EST1075275 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB117 3' end, mRNA sequence
Length = 813
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 872 agacctcgacctcgacctcgac 893
||||||||||||||||||||||
Sbjct: 236 agacctcgacctcgacctcgac 215
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 873 gacctcgacctcgacctcgac 893
|||||||||||||||||||||
Sbjct: 229 gacctcgacctcgacctcgac 209
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 873 gacctcgacctcgacctcgac 893
|||||||||||||||||||||
Sbjct: 223 gacctcgacctcgacctcgac 203
>gb|DR686396.1|DR686396 EST1076474 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABF58 3' end, mRNA sequence
Length = 510
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 872 agacctcgacctcgacctcgac 893
||||||||||||||||||||||
Sbjct: 83 agacctcgacctcgacctcgac 62
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 873 gacctcgacctcgacctcgac 893
|||||||||||||||||||||
Sbjct: 76 gacctcgacctcgacctcgac 56
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 873 gacctcgacctcgacctcgac 893
|||||||||||||||||||||
Sbjct: 70 gacctcgacctcgacctcgac 50
>gb|DR694783.1|DR694783 EST1084875 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEG78 3' end, mRNA sequence
Length = 796
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 872 agacctcgacctcgacctcgac 893
||||||||||||||||||||||
Sbjct: 136 agacctcgacctcgacctcgac 115
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 873 gacctcgacctcgacctcgac 893
|||||||||||||||||||||
Sbjct: 129 gacctcgacctcgacctcgac 109
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 873 gacctcgacctcgacctcgac 893
|||||||||||||||||||||
Sbjct: 123 gacctcgacctcgacctcgac 103
>gb|DT627039.1|DT627039 EST1160115 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAU18 5' end, mRNA sequence
Length = 957
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 872 agacctcgacctcgacctcgac 893
||||||||||||||||||||||
Sbjct: 171 agacctcgacctcgacctcgac 150
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 873 gacctcgacctcgacctcgac 893
|||||||||||||||||||||
Sbjct: 164 gacctcgacctcgacctcgac 144
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 873 gacctcgacctcgacctcgac 893
|||||||||||||||||||||
Sbjct: 158 gacctcgacctcgacctcgac 138
>gb|CO199988.1|CO199988 GEO2_4_F06.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_4_F06_A032 5', mRNA sequence
Length = 791
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 873 gacctcgacctcgacctcgac 893
|||||||||||||||||||||
Sbjct: 208 gacctcgacctcgacctcgac 188
>gb|AF441556.1| Pinus taeda PtTX4101 microsatellite sequence
Length = 154
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 acagcagcagcaacaacaaca 79
|||||||||||||||||||||
Sbjct: 73 acagcagcagcaacaacaaca 93
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 acagcagcagcaacaacaaca 79
|||||||||||||||||||||
Sbjct: 37 acagcagcagcaacaacaaca 57
>gb|AW226133.1|AW226133 ST77G01 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST77G01, mRNA sequence
Length = 418
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 336 cagcagcagcaacaacaaca 355
>gb|AL751291.1|AL751291 AL751291 RS Pinus pinaster cDNA clone RS07B09, mRNA sequence
Length = 686
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 303 cagcagcagcaacaacaaca 322
>gb|CF390789.1|CF390789 RTDR2_17_A11.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_17_A11_A021 5', mRNA
sequence
Length = 761
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 264 cagcagcagcaacaacaaca 283
>gb|CF397912.1|CF397912 RTDS3_23_H05.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_23_H05_A022 5', mRNA sequence
Length = 569
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 97 cagcagcagcaacaacaaca 116
>gb|BX679011.1|BX679011 BX679011 RS Pinus pinaster cDNA clone RS18D05, mRNA sequence
Length = 480
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 309 cagcagcagcaacaacaaca 328
>gb|BX681370.1|BX681370 BX681370 RS Pinus pinaster cDNA clone RS57H02, mRNA sequence
Length = 544
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 220 cagcagcagcaacaacaaca 239
>gb|CO166850.1|CO166850 FLD1_65_A09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_65_A09_A029 3', mRNA sequence
Length = 847
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 360 cagcagcagcaacaacaaca 379
>gb|CO200202.1|CO200202 GEO2_6_B08.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_B08_A032 3', mRNA sequence
Length = 875
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 300 cagcagcagcaacaacaaca 319
>gb|CO364144.1|CO364144 RTK1_14_A07.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_14_A07_A029 3', mRNA sequence
Length = 375
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 49 cagcagcagcaacaacaaca 68
>gb|CO364223.1|CO364223 RTK1_14_A07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_14_A07_A029 5', mRNA sequence
Length = 847
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 675 cagcagcagcaacaacaaca 694
>gb|CO369079.1|CO369079 RTK1_44_G01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_44_G01_A029 5', mRNA sequence
Length = 768
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 342 cagcagcagcaacaacaaca 361
>gb|CO370324.1|CO370324 RTK1_67_D08.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_67_D08_A029 3', mRNA sequence
Length = 849
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 292 cagcagcagcaacaacaaca 273
>gb|CV031609.1|CV031609 RTNACL1_2_D04.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_2_D04_A029 5', mRNA sequence
Length = 816
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 489 cagcagcagcaacaacaaca 508
>gb|CV035021.1|CV035021 RTNACL1_13_D07.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_D07_A029 3', mRNA sequence
Length = 708
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 376 cagcagcagcaacaacaaca 395
>gb|CV134467.1|CV134467 EST845676 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIATD75 5' end, mRNA sequence
Length = 433
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 251 cagcagcagcaacaacaaca 232
>gb|CV144675.1|CV144675 EST855884 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPID876 5' end, mRNA sequence
Length = 784
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 568 cagcagcagcaacaacaaca 587
>gb|CV147532.1|CV147532 EST858741 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIE829 5' end, mRNA sequence
Length = 990
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 928 cagcagcagcaacaacaaca 947
>gb|CX713182.1|CX713182 RTPQ1_7_B05.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_7_B05_A032 5', mRNA sequence
Length = 892
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 720 cagcagcagcaacaacaaca 701
>gb|DN450052.1|DN450052 EST945851 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPICP42 5' end, mRNA sequence
Length = 852
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 568 cagcagcagcaacaacaaca 587
>gb|DR048742.1|DR048742 RTBOR1_11_A06.b1_A029 Roots plus added boron Pinus taeda cDNA
clone RTBOR1_11_A06_A029 3', mRNA sequence
Length = 772
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 8 cagcagcagcaacaacaaca 27
>gb|DR048816.1|DR048816 RTBOR1_11_A06.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_11_A06_A029 5', mRNA sequence
Length = 784
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 109 cagcagcagcaacaacaaca 128
>gb|DR068471.1|DR068471 RTDK1_1_B12.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_1_B12_A029 3', mRNA sequence
Length = 646
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 613 cagcagcagcaacaacaaca 594
>gb|DR068622.1|DR068622 RTDK1_1_H06.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_1_H06_A029 5', mRNA sequence
Length = 740
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 475 cagcagcagcaacaacaaca 494
>gb|DR088834.1|DR088834 RTAL1_5_A03.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_5_A03_A029 3', mRNA sequence
Length = 505
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 176 cagcagcagcaacaacaaca 195
>gb|DR385128.1|DR385128 RTHG1_6_G01.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_6_G01_A029 5', mRNA sequence
Length = 842
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 315 cagcagcagcaacaacaaca 334
>gb|DR388641.1|DR388641 RTHG1_29_B12.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_29_B12_A029 5', mRNA sequence
Length = 873
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 566 cagcagcagcaacaacaaca 547
>gb|DR686105.1|DR686105 EST1076183 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABC37 3' end, mRNA sequence
Length = 793
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 626 cagcagcagcaacaacaaca 645
>gb|DR744325.1|DR744325 RTCU1_21_F02.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_21_F02_A029 5', mRNA sequence
Length = 659
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 227 cagcagcagcaacaacaaca 246
>gb|DT624585.1|DT624585 EST1158920 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAG87 5' end, mRNA sequence
Length = 851
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 568 cagcagcagcaacaacaaca 587
>gb|DT624907.1|DT624907 EST1159182 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAJ79 5' end, mRNA sequence
Length = 853
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 568 cagcagcagcaacaacaaca 587
>gb|DT633495.1|DT633495 EST1148426 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFV50 3' end, mRNA sequence
Length = 860
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 634 cagcagcagcaacaacaaca 653
>gb|AF335094.1| Pinus taeda clone PtTX4177 microsatellite sequence
Length = 455
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 427 cagcagcagcaacaacaaca 408
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 128,212
Number of Sequences: 355925
Number of extensions: 128212
Number of successful extensions: 38253
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38070
Number of HSP's gapped (non-prelim): 173
length of query: 1220
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1201
effective length of database: 210,514,662
effective search space: 252828109062
effective search space used: 252828109062
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)