BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CCR2
(1466 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX678316.1|BX678316 BX678316 RN Pinus pinaster cDNA clon... 58 1e-006
gb|CF671510.1|CF671510 RTCNT1_57_C10.g1_A029 Root control P... 56 4e-006
gb|CF671834.1|CF671834 RTCNT1_59_C10.g1_A029 Root control P... 56 4e-006
gb|CF385232.1|CF385232 RTDR1_2_C01.g1_A015 Loblolly pine ro... 54 2e-005
gb|CF386582.1|CF386582 RTDR1_15_F07.g1_A015 Loblolly pine r... 54 2e-005
gb|CF470763.1|CF470763 RTDS1_14_F01.g1_A015 Drought-stresse... 54 2e-005
gb|CF477062.1|CF477062 RTWW3_5_A08.g1_A022 Well-watered lob... 54 2e-005
gb|CF670155.1|CF670155 RTCNT1_48_A05.g1_A029 Root control P... 54 2e-005
gb|CF672467.1|CF672467 RTCNT1_63_G01.g1_A029 Root control P... 54 2e-005
gb|CX652113.1|CX652113 COLD1_57_B07.b1_A029 Root cold Pinus... 54 2e-005
gb|CX652266.1|CX652266 COLD1_58_B06.b1_A029 Root cold Pinus... 54 2e-005
gb|CX652430.1|CX652430 COLD1_59_B07.b1_A029 Root cold Pinus... 54 2e-005
gb|DR018089.1|DR018089 STRS1_20_A03.g1_A034 Shoot tip pitch... 54 2e-005
gb|DR018755.1|DR018755 STRS1_25_B05.g1_A034 Shoot tip pitch... 54 2e-005
gb|DR019220.1|DR019220 STRS1_28_C05.g1_A034 Shoot tip pitch... 54 2e-005
gb|DR025138.1|DR025138 STRS1_69_G06.g1_A034 Shoot tip pitch... 54 2e-005
gb|DR094292.1|DR094292 STRR1_13_D10.g1_A033 Stem Response R... 54 2e-005
gb|DR097150.1|DR097150 STRR1_32_G10.g1_A033 Stem Response R... 54 2e-005
gb|DR061216.1|DR061216 RTNIT1_32_G04.g1_A029 Roots minus ni... 48 0.001
gb|CR393786.1|CR393786 CR393786 RN Pinus pinaster cDNA clon... 46 0.004
gb|DR068936.1|DR068936 RTDK1_3_F07.g1_A029 Roots, dark Pinu... 42 0.064
gb|DR093275.1|DR093275 STRR1_7_E11.b1_A033 Stem Response Re... 42 0.064
gb|AW755154.1|AW755154 PC11F03 Pine TriplEx pollen cone lib... 40 0.25
gb|BX250552.1|BX250552 BX250552 Pinus pinaster differenciat... 40 0.25
gb|BG040044.1|BG040044 NXSI_105_H04_F NXSI (Nsf Xylem Side ... 40 0.25
gb|CR392825.1|CR392825 CR392825 RN Pinus pinaster cDNA clon... 40 0.25
gb|CO198710.1|CO198710 GEO1_15_H12.g1_A029 Root gravitropis... 40 0.25
gb|DR090378.1|DR090378 RTAL1_14_D07.g1_A029 Roots plus adde... 40 0.25
gb|DR090667.1|DR090667 RTAL1_16_D07.g1_A029 Roots plus adde... 40 0.25
gb|DR096258.1|DR096258 STRR1_26_F12.g1_A033 Stem Response R... 40 0.25
gb|DR097291.1|DR097291 STRR1_33_F04.g3_A033 Stem Response R... 40 0.25
gb|DR160038.1|DR160038 RTFE1_3_G06.b1_A029 Roots minus iron... 40 0.25
gb|DR177989.1|DR177989 RTMNUT1_8_C12.g1_A029 Roots minus mi... 40 0.25
gb|DR685014.1|DR685014 EST1075091 Normalized pine embryo li... 40 0.25
gb|DR688033.1|DR688033 EST1078116 Normalized pine embryo li... 40 0.25
gb|DT632521.1|DT632521 EST1147452 Normalized pine embryo li... 40 0.25
gb|DT634609.1|DT634609 EST1149540 Normalized pine embryo li... 40 0.25
gb|AW042907.1|AW042907 ST26H07 Pine TriplEx shoot tip libra... 38 0.99
gb|AW754917.1|AW754917 PC08D01 Pine TriplEx pollen cone lib... 38 0.99
gb|AW981496.1|AW981496 PC13A10 Pine TriplEx pollen cone lib... 38 0.99
gb|BE762176.1|BE762176 NXCI_083_A03_F NXCI (Nsf Xylem Compr... 38 0.99
gb|BG039295.1|BG039295 NXSI_097_E03_F NXSI (Nsf Xylem Side ... 38 0.99
gb|BQ634986.1|BQ634986 NXRV075_E06_F NXRV (Nsf Xylem Root w... 38 0.99
gb|CF389658.1|CF389658 RTDR2_8_E12.g1_A021 Loblolly pine ro... 38 0.99
gb|CF393352.1|CF393352 RTDR3_20_G03.g1_A022 Loblolly pine r... 38 0.99
gb|CF472374.1|CF472374 RTDS1_9_F04.b1_A015 Drought-stressed... 38 0.99
gb|CF472400.1|CF472400 RTDS1_9_F04.g1_A015 Drought-stressed... 38 0.99
gb|CF473386.1|CF473386 RTWW2_2_H04.g1_A021 Well-watered lob... 38 0.99
gb|CF664286.1|CF664286 RTCNT1_8_G06.g1_A029 Root control Pi... 38 0.99
gb|CF664735.1|CF664735 RTCNT1_11_D09.g1_A029 Root control P... 38 0.99
gb|CO163978.1|CO163978 FLD1_45_B08.b1_A029 Root flooded Pin... 38 0.99
gb|CO164054.1|CO164054 FLD1_45_B08.g1_A029 Root flooded Pin... 38 0.99
gb|CO167640.1|CO167640 FLD1_70_E10.b1_A029 Root flooded Pin... 38 0.99
gb|CO167716.1|CO167716 FLD1_70_E10.g1_A029 Root flooded Pin... 38 0.99
gb|CO171819.1|CO171819 NDL1_24_G06.g1_A029 Needles control ... 38 0.99
gb|CO174126.1|CO174126 NDL1_41_G12.g1_A029 Needles control ... 38 0.99
gb|CO199922.1|CO199922 GEO2_4_H01.b1_A032 Root gravitropism... 38 0.99
gb|CO365988.1|CO365988 RTK1_20_A11.g1_A029 Roots minus pota... 38 0.99
gb|CO368195.1|CO368195 RTK1_39_E03.b1_A029 Roots minus pota... 38 0.99
gb|CO368279.1|CO368279 RTK1_39_E03.g1_A029 Roots minus pota... 38 0.99
gb|CO369668.1|CO369668 RTK1_48_D11.g1_A029 Roots minus pota... 38 0.99
gb|CV031653.1|CV031653 RTNACL1_2_H03.g1_A029 Roots plus add... 38 0.99
gb|DR016514.1|DR016514 STRS1_10_C08.g1_A034 Shoot tip pitch... 38 0.99
gb|DR017730.1|DR017730 STRS1_18_D04.b1_A034 Shoot tip pitch... 38 0.99
gb|DR017808.1|DR017808 STRS1_18_D04.g1_A034 Shoot tip pitch... 38 0.99
gb|DR022326.1|DR022326 STRS1_50_G10.b1_A034 Shoot tip pitch... 38 0.99
gb|DR022403.1|DR022403 STRS1_50_G10.g1_A034 Shoot tip pitch... 38 0.99
gb|DR022611.1|DR022611 STRS1_52_F05.b1_A034 Shoot tip pitch... 38 0.99
gb|DR024639.1|DR024639 STRS1_66_H11.b1_A034 Shoot tip pitch... 38 0.99
gb|DR054929.1|DR054929 RTCA1_20_B04.g1_A029 Roots minus cal... 38 0.99
gb|DR057327.1|DR057327 RTNIT1_5_D06.b1_A029 Roots minus nit... 38 0.99
gb|DR057407.1|DR057407 RTNIT1_5_D06.g1_A029 Roots minus nit... 38 0.99
gb|DR071378.1|DR071378 RTDK1_19_A08.g1_A029 Roots, dark Pin... 38 0.99
gb|DR071895.1|DR071895 RTDK1_22_F05.g1_A029 Roots, dark Pin... 38 0.99
gb|DR094057.1|DR094057 STRR1_12_D11.b1_A033 Stem Response R... 38 0.99
gb|DR094133.1|DR094133 STRR1_12_D11.g1_A033 Stem Response R... 38 0.99
gb|DR098480.1|DR098480 STRR1_45_F11.g1_A033 Stem Response R... 38 0.99
gb|DR160331.1|DR160331 RTFE1_5_H08.b1_A029 Roots minus iron... 38 0.99
gb|DR160425.1|DR160425 RTFE1_5_H08.g1_A029 Roots minus iron... 38 0.99
gb|DR179539.1|DR179539 RTMNUT1_22_F07.g2_A029 Roots minus m... 38 0.99
gb|DR386732.1|DR386732 RTHG1_17_D02.b1_A029 Roots plus adde... 38 0.99
gb|DR682619.1|DR682619 EST1072694 Normalized pine embryo li... 38 0.99
gb|DR683507.1|DR683507 EST1073583 Normalized pine embryo li... 38 0.99
gb|DR684536.1|DR684536 EST1074613 Normalized pine embryo li... 38 0.99
gb|DR685025.1|DR685025 EST1075102 Normalized pine embryo li... 38 0.99
gb|DR692382.1|DR692382 EST1082470 Normalized pine embryo li... 38 0.99
gb|DR693877.1|DR693877 EST1083967 Normalized pine embryo li... 38 0.99
gb|DT631368.1|DT631368 EST1146299 Normalized pine embryo li... 38 0.99
gb|DT632346.1|DT632346 EST1147277 Normalized pine embryo li... 38 0.99
gb|DT637328.1|DT637328 EST1152259 Normalized pine embryo li... 38 0.99
gb|AY064169.1| Pinus taeda cinnamoyl-CoA reductase mRNA, co... 38 0.99
gb|CF390684.1|CF390684 RTDR2_20_F09.g1_A021 Loblolly pine r... 36 3.9
gb|CF474874.1|CF474874 RTWW2_8_E09.g1_A021 Well-watered lob... 36 3.9
gb|CF475377.1|CF475377 RTWW2_13_A06.g1_A021 Well-watered lo... 36 3.9
gb|CF663963.1|CF663963 RTCNT1_6_G05.b1_A029 Root control Pi... 36 3.9
gb|CF664022.1|CF664022 RTCNT1_6_G05.g1_A029 Root control Pi... 36 3.9
gb|CF667541.1|CF667541 RTCNT1_31_B05.b1_A029 Root control P... 36 3.9
gb|CF671756.1|CF671756 RTCNT1_59_C10.b1_A029 Root control P... 36 3.9
gb|CO163442.1|CO163442 FLD1_41_E05.g1_A029 Root flooded Pin... 36 3.9
gb|CX647662.1|CX647662 COLD1_19_C05.b1_A029 Root cold Pinus... 36 3.9
gb|DR013022.1|DR013022 HEAT1_16_B06.g1_A029 Root at 37 C fo... 36 3.9
gb|DR015320.1|DR015320 STRS1_2_F10.g1_A034 Shoot tip pitch ... 36 3.9
gb|DR017311.1|DR017311 STRS1_15_B02.g1_A034 Shoot tip pitch... 36 3.9
gb|DR060365.1|DR060365 RTNIT1_27_H06.b1_A029 Roots minus ni... 36 3.9
gb|DR060911.1|DR060911 RTNIT1_30_F12.g1_A029 Roots minus ni... 36 3.9
gb|DR088561.1|DR088561 RTAL1_2_F05.g1_A029 Roots plus added... 36 3.9
gb|DR093353.1|DR093353 STRR1_7_E10.g1_A033 Stem Response Re... 36 3.9
gb|DR099636.1|DR099636 STRR1_57_B04.b1_A033 Stem Response R... 36 3.9
gb|DR110492.1|DR110492 RTS1_11_E07.b1_A029 Roots minus sulf... 36 3.9
gb|DR164969.1|DR164969 RTPHOS1_1_B08.g1_A029 Roots minus ph... 36 3.9
gb|DR167692.1|DR167692 RTPHOS1_20_A09.g1_A029 Roots minus p... 36 3.9
gb|DR690547.1|DR690547 EST1080633 Normalized pine embryo li... 36 3.9
gb|DR690997.1|DR690997 EST1081083 Normalized pine embryo li... 36 3.9
gb|DR745154.1|DR745154 RTCU1_27_H11.b1_A029 Roots plus adde... 36 3.9
gb|DT636149.1|DT636149 EST1151080 Normalized pine embryo li... 36 3.9
>gb|BX678316.1|BX678316 BX678316 RN Pinus pinaster cDNA clone RN69E08, mRNA sequence
Length = 575
Score = 58.0 bits (29), Expect = 1e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
|||||||| ||||| ||| ||||||||||||||| | |||||||| || || ||||||
Sbjct: 9 tgcgtgacgggagcgacaggtttcattgcctcctggttggtcaagcgtctactcgagaag 68
Query: 243 ggctacacagtcc 255
|||||||| ||||
Sbjct: 69 ggctacactgtcc 81
>gb|CF671510.1|CF671510 RTCNT1_57_C10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_57_C10_A029 5', mRNA sequence
Length = 814
Score = 56.0 bits (28), Expect = 4e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 204 ttcattgcctcctggctcgtcaagcgcctcctggagaagggctacacagtcc 255
||||||||||||||| | ||||||||| | || |||||||||||||| ||||
Sbjct: 179 ttcattgcctcctggttggtcaagcgcttactcgagaagggctacactgtcc 230
>gb|CF671834.1|CF671834 RTCNT1_59_C10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_59_C10_A029 5', mRNA sequence
Length = 765
Score = 56.0 bits (28), Expect = 4e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 204 ttcattgcctcctggctcgtcaagcgcctcctggagaagggctacacagtcc 255
||||||||||||||| | ||||||||| | || |||||||||||||| ||||
Sbjct: 139 ttcattgcctcctggttggtcaagcgcttactcgagaagggctacactgtcc 190
>gb|CF385232.1|CF385232 RTDR1_2_C01.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_2_C01_A015 5', mRNA
sequence
Length = 664
Score = 54.0 bits (27), Expect = 2e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
|||||||| |||| | ||| ||||| ||||||||||||||||||||| | || || |||
Sbjct: 44 tgcgtgacgggaggggcaggtttcatggcctcctggctcgtcaagcgcttgctcgacaag 103
Query: 243 ggctaca 249
|||||||
Sbjct: 104 ggctaca 110
>gb|CF386582.1|CF386582 RTDR1_15_F07.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_15_F07_A015 5', mRNA
sequence
Length = 705
Score = 54.0 bits (27), Expect = 2e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
|||||||| |||| | ||| ||||| ||||||||||||||||||||| | || || |||
Sbjct: 14 tgcgtgacgggaggggcaggtttcatggcctcctggctcgtcaagcgcttgctcgacaag 73
Query: 243 ggctaca 249
|||||||
Sbjct: 74 ggctaca 80
>gb|CF470763.1|CF470763 RTDS1_14_F01.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_14_F01_A015 5', mRNA sequence
Length = 776
Score = 54.0 bits (27), Expect = 2e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
|||||||| |||| | ||| ||||| ||||||||||||||||||||| | || || |||
Sbjct: 88 tgcgtgacgggaggggcaggtttcatggcctcctggctcgtcaagcgcttgctcgacaag 147
Query: 243 ggctaca 249
|||||||
Sbjct: 148 ggctaca 154
>gb|CF477062.1|CF477062 RTWW3_5_A08.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_5_A08_A022 5', mRNA sequence
Length = 700
Score = 54.0 bits (27), Expect = 2e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
|||||||| |||| | ||| ||||| ||||||||||||||||||||| | || || |||
Sbjct: 14 tgcgtgacgggaggggcaggtttcatggcctcctggctcgtcaagcgcttgctcgacaag 73
Query: 243 ggctaca 249
|||||||
Sbjct: 74 ggctaca 80
>gb|CF670155.1|CF670155 RTCNT1_48_A05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_48_A05_A029 5', mRNA sequence
Length = 780
Score = 54.0 bits (27), Expect = 2e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
|||||||| |||| | ||| ||||| ||||||||||||||||||||| | || || |||
Sbjct: 66 tgcgtgacgggaggggcaggtttcatggcctcctggctcgtcaagcgcttgctcgacaag 125
Query: 243 ggctaca 249
|||||||
Sbjct: 126 ggctaca 132
>gb|CF672467.1|CF672467 RTCNT1_63_G01.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_63_G01_A029 5', mRNA sequence
Length = 266
Score = 54.0 bits (27), Expect = 2e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
|||||||| |||| | ||| ||||| ||||||||||||||||||||| | || || |||
Sbjct: 43 tgcgtgacgggaggggcaggtttcatggcctcctggctcgtcaagcgcttgctcgacaag 102
Query: 243 ggctaca 249
|||||||
Sbjct: 103 ggctaca 109
>gb|CX652113.1|CX652113 COLD1_57_B07.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_57_B07_A029 3', mRNA sequence
Length = 323
Score = 54.0 bits (27), Expect = 2e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
|||||||| |||| | ||| ||||| ||||||||||||||||||||| | || || |||
Sbjct: 284 tgcgtgacgggaggggcaggtttcatggcctcctggctcgtcaagcgcttgctcgacaag 225
Query: 243 ggctaca 249
|||||||
Sbjct: 224 ggctaca 218
>gb|CX652266.1|CX652266 COLD1_58_B06.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_58_B06_A029 3', mRNA sequence
Length = 621
Score = 54.0 bits (27), Expect = 2e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
|||||||| |||| | ||| ||||| ||||||||||||||||||||| | || || |||
Sbjct: 573 tgcgtgacgggaggggcaggtttcatggcctcctggctcgtcaagcgcttgctcgacaag 514
Query: 243 ggctaca 249
|||||||
Sbjct: 513 ggctaca 507
>gb|CX652430.1|CX652430 COLD1_59_B07.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_59_B07_A029 3', mRNA sequence
Length = 531
Score = 54.0 bits (27), Expect = 2e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
|||||||| |||| | ||| ||||| ||||||||||||||||||||| | || || |||
Sbjct: 484 tgcgtgacgggaggggcaggtttcatggcctcctggctcgtcaagcgcttgctcgacaag 425
Query: 243 ggctaca 249
|||||||
Sbjct: 424 ggctaca 418
>gb|DR018089.1|DR018089 STRS1_20_A03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_20_A03_A034 5', mRNA sequence
Length = 656
Score = 54.0 bits (27), Expect = 2e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
|||||||| |||| | ||| ||||| ||||||||||||||||||||| | || || |||
Sbjct: 4 tgcgtgacgggaggggcaggtttcatggcctcctggctcgtcaagcgcttgctcgacaag 63
Query: 243 ggctaca 249
|||||||
Sbjct: 64 ggctaca 70
>gb|DR018755.1|DR018755 STRS1_25_B05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_25_B05_A034 5', mRNA sequence
Length = 818
Score = 54.0 bits (27), Expect = 2e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
|||||||| |||| | ||| ||||| ||||||||||||||||||||| | || || |||
Sbjct: 75 tgcgtgacgggaggggcaggtttcatggcctcctggctcgtcaagcgcttgctcgacaag 134
Query: 243 ggctaca 249
|||||||
Sbjct: 135 ggctaca 141
>gb|DR019220.1|DR019220 STRS1_28_C05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_28_C05_A034 5', mRNA sequence
Length = 836
Score = 54.0 bits (27), Expect = 2e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
|||||||| |||| | ||| ||||| ||||||||||||||||||||| | || || |||
Sbjct: 74 tgcgtgacgggaggggcaggtttcatggcctcctggctcgtcaagcgcttgctcgacaag 133
Query: 243 ggctaca 249
|||||||
Sbjct: 134 ggctaca 140
>gb|DR025138.1|DR025138 STRS1_69_G06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_69_G06_A034 5', mRNA sequence
Length = 384
Score = 54.0 bits (27), Expect = 2e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
|||||||| |||| | ||| ||||| ||||||||||||||||||||| | || || |||
Sbjct: 35 tgcgtgacgggaggggcaggtttcatggcctcctggctcgtcaagcgcttgctcgacaag 94
Query: 243 ggctaca 249
|||||||
Sbjct: 95 ggctaca 101
>gb|DR094292.1|DR094292 STRR1_13_D10.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_13_D10_A033 5', mRNA sequence
Length = 872
Score = 54.0 bits (27), Expect = 2e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
|||||||| |||| | ||| ||||| ||||||||||||||||||||| | || || |||
Sbjct: 76 tgcgtgactggaggggcaggtttcatggcctcctggctcgtcaagcgcttgctcgacaag 135
Query: 243 ggctaca 249
|||||||
Sbjct: 136 ggctaca 142
>gb|DR097150.1|DR097150 STRR1_32_G10.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_32_G10_A033 5', mRNA sequence
Length = 750
Score = 54.0 bits (27), Expect = 2e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
|||||||| |||| | ||| ||||| ||||||||||||||||||||| | || || |||
Sbjct: 51 tgcgtgacgggaggggcaggtttcatggcctcctggctcgtcaagcgcttgctcgacaag 110
Query: 243 ggctaca 249
|||||||
Sbjct: 111 ggctaca 117
>gb|DR061216.1|DR061216 RTNIT1_32_G04.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_32_G04_A029 5', mRNA sequence
Length = 694
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgc 230
|||||||| |||| | ||| ||||| |||||||||||||||||||||
Sbjct: 14 tgcgtgacgggaggggcaggtttcatggcctcctggctcgtcaagcgc 61
>gb|CR393786.1|CR393786 CR393786 RN Pinus pinaster cDNA clone RN65C12, mRNA sequence
Length = 510
Score = 46.1 bits (23), Expect = 0.004
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
|||||||| |||| | ||| ||||| || |||||||||||||||||| | || || |||
Sbjct: 77 tgcgtgacgggaggggcaggtttcatggcgtcctggctcgtcaagcgcttgctcgacaag 136
Query: 243 ggctaca 249
|||||||
Sbjct: 137 ggctaca 143
>gb|DR068936.1|DR068936 RTDK1_3_F07.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_3_F07_A029 5', mRNA sequence
Length = 739
Score = 42.1 bits (21), Expect = 0.064
Identities = 60/73 (82%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcctggagaag 242
|||||||| ||||| ||| |||||||||||| || | |||| ||| || || ||||||
Sbjct: 6 tgcgtgacaggagcgacaggtttcattgcctccgggttggtcatgcgtctactcgagaag 65
Query: 243 ggctacacagtcc 255
|||||||| ||||
Sbjct: 66 ggctacactgtcc 78
>gb|DR093275.1|DR093275 STRR1_7_E11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_7_E11_A033 3', mRNA sequence
Length = 856
Score = 42.1 bits (21), Expect = 0.064
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 210 gcctcctggctcgtcaagcgc 230
|||||||||||||||||||||
Sbjct: 689 gcctcctggctcgtcaagcgc 669
>gb|AW755154.1|AW755154 PC11F03 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC11F03, mRNA sequence
Length = 376
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 192 ggagctggagggttcattgcctcc 215
|||||||| |||||||||||||||
Sbjct: 177 ggagctggtgggttcattgcctcc 200
>gb|BX250552.1|BX250552 BX250552 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP038D08, mRNA sequence
Length = 435
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 192 ggagctggagggttcattgcctcc 215
|||||||| |||||||||||||||
Sbjct: 138 ggagctggtgggttcattgcctcc 161
>gb|BG040044.1|BG040044 NXSI_105_H04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_105_H04 5' similar to Arabidopsis thaliana
sequence At5g28840 epimerase/dehydratase - like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 502
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 192 ggagctggagggttcattgcctcc 215
|||||||| |||||||||||||||
Sbjct: 193 ggagctggtgggttcattgcctcc 216
>gb|CR392825.1|CR392825 CR392825 RN Pinus pinaster cDNA clone RN48H03, mRNA sequence
Length = 437
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 192 ggagctggagggttcattgcctcc 215
|||||||| |||||||||||||||
Sbjct: 178 ggagctggtgggttcattgcctcc 201
>gb|CO198710.1|CO198710 GEO1_15_H12.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_15_H12_A029 5', mRNA sequence
Length = 244
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 192 ggagctggagggttcattgcctcc 215
|||||||| |||||||||||||||
Sbjct: 145 ggagctggtgggttcattgcctcc 168
>gb|DR090378.1|DR090378 RTAL1_14_D07.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_14_D07_A029 5', mRNA sequence
Length = 353
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 192 ggagctggagggttcattgcctcc 215
|||||||| |||||||||||||||
Sbjct: 168 ggagctggtgggttcattgcctcc 191
>gb|DR090667.1|DR090667 RTAL1_16_D07.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_16_D07_A029 5', mRNA sequence
Length = 624
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 192 ggagctggagggttcattgcctcc 215
|||||||| |||||||||||||||
Sbjct: 184 ggagctggtgggttcattgcctcc 207
>gb|DR096258.1|DR096258 STRR1_26_F12.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_26_F12_A033 5', mRNA sequence
Length = 712
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 192 ggagctggagggttcattgcctcc 215
|||||||| |||||||||||||||
Sbjct: 160 ggagctggtgggttcattgcctcc 183
>gb|DR097291.1|DR097291 STRR1_33_F04.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_F04_A033 5', mRNA sequence
Length = 857
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 192 ggagctggagggttcattgcctcc 215
|||||||| |||||||||||||||
Sbjct: 125 ggagctggtgggttcattgcctcc 148
>gb|DR160038.1|DR160038 RTFE1_3_G06.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_3_G06_A029 3', mRNA sequence
Length = 575
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 192 ggagctggagggttcattgcctcc 215
|||||||| |||||||||||||||
Sbjct: 419 ggagctggtgggttcattgcctcc 396
>gb|DR177989.1|DR177989 RTMNUT1_8_C12.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_8_C12_A029 5', mRNA sequence
Length = 775
Score = 40.1 bits (20), Expect = 0.25
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 180 gtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaag 227
||||| ||||| ||||| || || ||||||||||| ||||| ||||||
Sbjct: 72 gtttgtgtgactggagcagggggattcattgcctcatggctggtcaag 119
>gb|DR685014.1|DR685014 EST1075091 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAZ16 3' end, mRNA sequence
Length = 843
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 192 ggagctggagggttcattgcctcc 215
|||||||| |||||||||||||||
Sbjct: 220 ggagctggtgggttcattgcctcc 243
>gb|DR688033.1|DR688033 EST1078116 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABZ56 3' end, mRNA sequence
Length = 748
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 192 ggagctggagggttcattgcctcc 215
|||||||| |||||||||||||||
Sbjct: 219 ggagctggtgggttcattgcctcc 242
>gb|DT632521.1|DT632521 EST1147452 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFK87 3' end, mRNA sequence
Length = 842
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 192 ggagctggagggttcattgcctcc 215
|||||||| |||||||||||||||
Sbjct: 228 ggagctggtgggttcattgcctcc 251
>gb|DT634609.1|DT634609 EST1149540 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG782 3' end, mRNA sequence
Length = 832
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 192 ggagctggagggttcattgcctcc 215
|||||||| |||||||||||||||
Sbjct: 227 ggagctggtgggttcattgcctcc 250
>gb|AW042907.1|AW042907 ST26H07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST26H07, mRNA sequence
Length = 563
Score = 38.2 bits (19), Expect = 0.99
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 186 gtgaccggagctggagggttcattgcctcctggct 220
||||| ||||| ||||| ||||||||||| |||||
Sbjct: 66 gtgacgggagcaggaggtttcattgcctcatggct 100
>gb|AW754917.1|AW754917 PC08D01 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC08D01, mRNA sequence
Length = 434
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 234 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 280
>gb|AW981496.1|AW981496 PC13A10 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC13A10, mRNA sequence
Length = 630
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 384 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 430
>gb|BE762176.1|BE762176 NXCI_083_A03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_083_A03 5' similar to Arabidopsis
thaliana sequence At1g09490 putative cinnamyl alcohol
dehydrogenase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 251
Score = 38.2 bits (19), Expect = 0.99
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 186 gtgaccggagctggagggttcattgcctcctggctcgtcaagc 228
||||| ||||||| ||| ||| | |||||||||||||| ||||
Sbjct: 77 gtgacgggagctgcaggtttcgtggcctcctggctcgtaaagc 119
>gb|BG039295.1|BG039295 NXSI_097_E03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_097_E03 5' similar to Arabidopsis thaliana
sequence At1g09510 putative cinnamyl alcohol
dehydrogenase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 545
Score = 38.2 bits (19), Expect = 0.99
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 186 gtgaccggagctggagggttcattgcctcctggct 220
||||| ||||| ||||| ||||||||||| |||||
Sbjct: 55 gtgacgggagcaggaggtttcattgcctcatggct 89
>gb|BQ634986.1|BQ634986 NXRV075_E06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV075_E06 5' similar to Arabidopsis thaliana
sequence At1g80820 cinnamoyl CoA reductase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 515
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 185 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 231
>gb|CF389658.1|CF389658 RTDR2_8_E12.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_8_E12_A021 5', mRNA
sequence
Length = 719
Score = 38.2 bits (19), Expect = 0.99
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 186 gtgaccggagctggagggttcattgcctcctggct 220
||||| ||||| ||||| ||||||||||| |||||
Sbjct: 33 gtgacgggagcaggaggtttcattgcctcatggct 67
>gb|CF393352.1|CF393352 RTDR3_20_G03.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_20_G03_A022 5', mRNA
sequence
Length = 540
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 320 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 366
>gb|CF472374.1|CF472374 RTDS1_9_F04.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_9_F04_A015 3', mRNA sequence
Length = 612
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 399 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 353
>gb|CF472400.1|CF472400 RTDS1_9_F04.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_9_F04_A015 5', mRNA sequence
Length = 776
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 695 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 649
>gb|CF473386.1|CF473386 RTWW2_2_H04.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_2_H04_A021 5', mRNA sequence
Length = 710
Score = 38.2 bits (19), Expect = 0.99
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 186 gtgaccggagctggagggttcattgcctcctggct 220
||||| ||||| ||||| ||||||||||| |||||
Sbjct: 13 gtgacgggagcaggaggtttcattgcctcatggct 47
>gb|CF664286.1|CF664286 RTCNT1_8_G06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_8_G06_A029 5', mRNA sequence
Length = 460
Score = 38.2 bits (19), Expect = 0.99
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 186 gtgaccggagctggagggttcattgcctcctggct 220
||||| ||||| ||||| ||||||||||| |||||
Sbjct: 135 gtgacgggagcaggaggtttcattgcctcatggct 169
>gb|CF664735.1|CF664735 RTCNT1_11_D09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_11_D09_A029 5', mRNA sequence
Length = 369
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 263 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 309
>gb|CO163978.1|CO163978 FLD1_45_B08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_45_B08_A029 3', mRNA sequence
Length = 843
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 435 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 389
>gb|CO164054.1|CO164054 FLD1_45_B08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_45_B08_A029 5', mRNA sequence
Length = 928
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 659 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 613
>gb|CO167640.1|CO167640 FLD1_70_E10.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_E10_A029 3', mRNA sequence
Length = 831
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 172 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 218
>gb|CO167716.1|CO167716 FLD1_70_E10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_E10_A029 5', mRNA sequence
Length = 745
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 667 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 713
>gb|CO171819.1|CO171819 NDL1_24_G06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_24_G06_A029 5', mRNA sequence
Length = 599
Score = 38.2 bits (19), Expect = 0.99
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 186 gtgaccggagctggagggttcattgcctcctggct 220
||||| ||||| ||||| ||||||||||| |||||
Sbjct: 5 gtgacgggagcaggaggtttcattgcctcatggct 39
>gb|CO174126.1|CO174126 NDL1_41_G12.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_41_G12_A029 5', mRNA sequence
Length = 637
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 126 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 172
>gb|CO199922.1|CO199922 GEO2_4_H01.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_4_H01_A032 3', mRNA sequence
Length = 829
Score = 38.2 bits (19), Expect = 0.99
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 186 gtgaccggagctggagggttcattgcctcctggct 220
||||| ||||| ||||| ||||||||||| |||||
Sbjct: 784 gtgacgggagcaggaggtttcattgcctcatggct 750
>gb|CO365988.1|CO365988 RTK1_20_A11.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_20_A11_A029 5', mRNA sequence
Length = 810
Score = 38.2 bits (19), Expect = 0.99
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 186 gtgaccggagctggagggttcattgcctcctggct 220
||||| ||||| ||||| ||||||||||| |||||
Sbjct: 12 gtgacgggagcaggaggtttcattgcctcatggct 46
>gb|CO368195.1|CO368195 RTK1_39_E03.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_39_E03_A029 3', mRNA sequence
Length = 826
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 171 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 125
>gb|CO368279.1|CO368279 RTK1_39_E03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_39_E03_A029 5', mRNA sequence
Length = 850
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 686 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 640
>gb|CO369668.1|CO369668 RTK1_48_D11.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_48_D11_A029 5', mRNA sequence
Length = 722
Score = 38.2 bits (19), Expect = 0.99
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 186 gtgaccggagctggagggttcattgcctcctggct 220
||||| ||||| ||||| ||||||||||| |||||
Sbjct: 31 gtgacgggagcaggaggtttcattgcctcatggct 65
>gb|CV031653.1|CV031653 RTNACL1_2_H03.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_2_H03_A029 5', mRNA sequence
Length = 768
Score = 38.2 bits (19), Expect = 0.99
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 186 gtgaccggagctggagggttcattgcctcctggctcgtcaagc 228
||||| ||||||| ||| ||| | |||||||||||||| ||||
Sbjct: 83 gtgacgggagctgcaggtttcgtggcctcctggctcgtaaagc 125
>gb|DR016514.1|DR016514 STRS1_10_C08.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_10_C08_A034 5', mRNA sequence
Length = 872
Score = 38.2 bits (19), Expect = 0.99
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 186 gtgaccggagctggagggttcattgcctcctggct 220
||||| ||||| ||||| ||||||||||| |||||
Sbjct: 27 gtgacgggagcaggaggtttcattgcctcatggct 61
>gb|DR017730.1|DR017730 STRS1_18_D04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_18_D04_A034 3', mRNA sequence
Length = 812
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 86 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 132
>gb|DR017808.1|DR017808 STRS1_18_D04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_18_D04_A034 5', mRNA sequence
Length = 810
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 181 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 227
>gb|DR022326.1|DR022326 STRS1_50_G10.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_50_G10_A034 3', mRNA sequence
Length = 887
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 166 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 212
>gb|DR022403.1|DR022403 STRS1_50_G10.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_50_G10_A034 5', mRNA sequence
Length = 315
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 261 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 307
>gb|DR022611.1|DR022611 STRS1_52_F05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_52_F05_A034 3', mRNA sequence
Length = 796
Score = 38.2 bits (19), Expect = 0.99
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 186 gtgaccggagctggagggttcattgcctcctggct 220
||||| ||||| ||||| ||||||||||| |||||
Sbjct: 738 gtgacgggagcaggaggtttcattgcctcatggct 704
>gb|DR024639.1|DR024639 STRS1_66_H11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_66_H11_A034 3', mRNA sequence
Length = 896
Score = 38.2 bits (19), Expect = 0.99
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 186 gtgaccggagctggagggttcattgcctcctggct 220
||||| ||||| ||||| ||||||||||| |||||
Sbjct: 847 gtgacgggagcaggaggtttcattgcctcatggct 813
>gb|DR054929.1|DR054929 RTCA1_20_B04.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_20_B04_A029 5', mRNA sequence
Length = 707
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 486 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 532
>gb|DR057327.1|DR057327 RTNIT1_5_D06.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_5_D06_A029 3', mRNA sequence
Length = 823
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 167 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 213
>gb|DR057407.1|DR057407 RTNIT1_5_D06.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_5_D06_A029 5', mRNA sequence
Length = 844
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 621 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 667
>gb|DR071378.1|DR071378 RTDK1_19_A08.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_19_A08_A029 5', mRNA sequence
Length = 647
Score = 38.2 bits (19), Expect = 0.99
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 186 gtgaccggagctggagggttcattgcctcctggct 220
||||| ||||| ||||| ||||||||||| |||||
Sbjct: 104 gtgacgggagcaggaggtttcattgcctcatggct 138
>gb|DR071895.1|DR071895 RTDK1_22_F05.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_22_F05_A029 5', mRNA sequence
Length = 502
Score = 38.2 bits (19), Expect = 0.99
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 186 gtgaccggagctggagggttcattgcctcctggct 220
||||| ||||| ||||| ||||||||||| |||||
Sbjct: 33 gtgacgggagcaggaggtttcattgcctcatggct 67
>gb|DR094057.1|DR094057 STRR1_12_D11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_D11_A033 3', mRNA sequence
Length = 797
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 138 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 184
>gb|DR094133.1|DR094133 STRR1_12_D11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_D11_A033 5', mRNA sequence
Length = 832
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 628 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 674
>gb|DR098480.1|DR098480 STRR1_45_F11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_45_F11_A033 5', mRNA sequence
Length = 708
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 274 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 320
>gb|DR160331.1|DR160331 RTFE1_5_H08.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_5_H08_A029 3', mRNA sequence
Length = 867
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 122 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 168
>gb|DR160425.1|DR160425 RTFE1_5_H08.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_5_H08_A029 5', mRNA sequence
Length = 845
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 424 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 470
>gb|DR179539.1|DR179539 RTMNUT1_22_F07.g2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_22_F07_A029 5', mRNA sequence
Length = 653
Score = 38.2 bits (19), Expect = 0.99
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 186 gtgaccggagctggagggttcattgcctcctggct 220
||||| ||||| ||||| ||||||||||| |||||
Sbjct: 31 gtgacgggagcaggaggtttcattgcctcatggct 65
>gb|DR386732.1|DR386732 RTHG1_17_D02.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_17_D02_A029 3', mRNA sequence
Length = 890
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 167 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 213
>gb|DR682619.1|DR682619 EST1072694 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAB09 3' end, mRNA sequence
Length = 754
Score = 38.2 bits (19), Expect = 0.99
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 186 gtgaccggagctggagggttcattgcctcctggct 220
||||| ||||| ||||| ||||||||||| |||||
Sbjct: 57 gtgacgggagcaggaggtttcattgcctcatggct 91
>gb|DR683507.1|DR683507 EST1073583 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAI03 3' end, mRNA sequence
Length = 773
Score = 38.2 bits (19), Expect = 0.99
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 186 gtgaccggagctggagggttcattgcctcctggct 220
||||| ||||| ||||| ||||||||||| |||||
Sbjct: 84 gtgacgggagcaggaggtttcattgcctcatggct 118
>gb|DR684536.1|DR684536 EST1074613 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAT82 3' end, mRNA sequence
Length = 789
Score = 38.2 bits (19), Expect = 0.99
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 186 gtgaccggagctggagggttcattgcctcctggct 220
||||| ||||| ||||| ||||||||||| |||||
Sbjct: 49 gtgacgggagcaggaggtttcattgcctcatggct 83
>gb|DR685025.1|DR685025 EST1075102 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAZ27 3' end, mRNA sequence
Length = 887
Score = 38.2 bits (19), Expect = 0.99
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 186 gtgaccggagctggagggttcattgcctcctggct 220
||||| ||||| ||||| ||||||||||| |||||
Sbjct: 59 gtgacgggagcaggaggtttcattgcctcatggct 93
>gb|DR692382.1|DR692382 EST1082470 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADL51 3' end, mRNA sequence
Length = 734
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 685 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 731
>gb|DR693877.1|DR693877 EST1083967 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE537 3' end, mRNA sequence
Length = 349
Score = 38.2 bits (19), Expect = 0.99
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 186 gtgaccggagctggagggttcattgcctcctggct 220
||||| ||||| ||||| ||||||||||| |||||
Sbjct: 80 gtgacgggagcaggaggtttcattgcctcatggct 114
>gb|DT631368.1|DT631368 EST1146299 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF806 3' end, mRNA sequence
Length = 919
Score = 38.2 bits (19), Expect = 0.99
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 186 gtgaccggagctggagggttcattgcctcctggct 220
||||| ||||| ||||| ||||||||||| |||||
Sbjct: 92 gtgacgggagcaggaggtttcattgcctcatggct 126
>gb|DT632346.1|DT632346 EST1147277 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFJ06 3' end, mRNA sequence
Length = 844
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 693 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 739
>gb|DT637328.1|DT637328 EST1152259 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH233 3' end, mRNA sequence
Length = 798
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 693 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 739
>gb|AY064169.1| Pinus taeda cinnamoyl-CoA reductase mRNA, complete cds
Length = 1359
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 684 tggagcaaccttgactattgcaaggagacaaagaactggtactgcta 730
>gb|CF390684.1|CF390684 RTDR2_20_F09.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_20_F09_A021 5', mRNA
sequence
Length = 774
Score = 36.2 bits (18), Expect = 3.9
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 179 ggtttgcgtgaccggagctggagggt 204
|||||||||||| ||||| |||||||
Sbjct: 28 ggtttgcgtgacaggagcaggagggt 53
>gb|CF474874.1|CF474874 RTWW2_8_E09.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_8_E09_A021 5', mRNA sequence
Length = 675
Score = 36.2 bits (18), Expect = 3.9
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 179 ggtttgcgtgaccggagctggagggt 204
|||||||||||| ||||| |||||||
Sbjct: 29 ggtttgcgtgacaggagcaggagggt 54
>gb|CF475377.1|CF475377 RTWW2_13_A06.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_13_A06_A021 5', mRNA sequence
Length = 769
Score = 36.2 bits (18), Expect = 3.9
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 179 ggtttgcgtgaccggagctggagggt 204
|||||||||||| ||||| |||||||
Sbjct: 34 ggtttgcgtgacaggagcaggagggt 59
>gb|CF663963.1|CF663963 RTCNT1_6_G05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_6_G05_A029 3', mRNA sequence
Length = 710
Score = 36.2 bits (18), Expect = 3.9
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 876 cacggccgctacatctgc 893
||||||||||||||||||
Sbjct: 300 cacggccgctacatctgc 317
>gb|CF664022.1|CF664022 RTCNT1_6_G05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_6_G05_A029 5', mRNA sequence
Length = 517
Score = 36.2 bits (18), Expect = 3.9
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 876 cacggccgctacatctgc 893
||||||||||||||||||
Sbjct: 382 cacggccgctacatctgc 399
>gb|CF667541.1|CF667541 RTCNT1_31_B05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_31_B05_A029 3', mRNA sequence
Length = 777
Score = 36.2 bits (18), Expect = 3.9
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 179 ggtttgcgtgaccggagctggagggt 204
|||||||||||| ||||| |||||||
Sbjct: 740 ggtttgcgtgacaggagcaggagggt 715
>gb|CF671756.1|CF671756 RTCNT1_59_C10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_59_C10_A029 3', mRNA sequence
Length = 472
Score = 36.2 bits (18), Expect = 3.9
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 876 cacggccgctacatctgc 893
||||||||||||||||||
Sbjct: 107 cacggccgctacatctgc 124
>gb|CO163442.1|CO163442 FLD1_41_E05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_41_E05_A029 5', mRNA sequence
Length = 852
Score = 36.2 bits (18), Expect = 3.9
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 179 ggtttgcgtgaccggagctggagggt 204
|||||||||||| ||||| |||||||
Sbjct: 13 ggtttgcgtgacaggagcaggagggt 38
>gb|CX647662.1|CX647662 COLD1_19_C05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_19_C05_A029 3', mRNA sequence
Length = 286
Score = 36.2 bits (18), Expect = 3.9
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 179 ggtttgcgtgaccggagctggagggt 204
|||||||||||| ||||| |||||||
Sbjct: 225 ggtttgcgtgacaggagcaggagggt 200
>gb|DR013022.1|DR013022 HEAT1_16_B06.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_16_B06_A029 5', mRNA sequence
Length = 631
Score = 36.2 bits (18), Expect = 3.9
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 179 ggtttgcgtgaccggagctggagggt 204
|||||||||||| ||||| |||||||
Sbjct: 31 ggtttgcgtgacaggagcaggagggt 56
>gb|DR015320.1|DR015320 STRS1_2_F10.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_2_F10_A034 5', mRNA sequence
Length = 852
Score = 36.2 bits (18), Expect = 3.9
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 179 ggtttgcgtgaccggagctggagggt 204
|||||||||||| ||||| |||||||
Sbjct: 14 ggtttgcgtgacaggagcaggagggt 39
>gb|DR017311.1|DR017311 STRS1_15_B02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_15_B02_A034 5', mRNA sequence
Length = 708
Score = 36.2 bits (18), Expect = 3.9
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 179 ggtttgcgtgaccggagctggagggt 204
|||||||||||| ||||| |||||||
Sbjct: 15 ggtttgcgtgacaggagcaggagggt 40
>gb|DR060365.1|DR060365 RTNIT1_27_H06.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_27_H06_A029 3', mRNA sequence
Length = 787
Score = 36.2 bits (18), Expect = 3.9
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 876 cacggccgctacatctgc 893
||||||||||||||||||
Sbjct: 380 cacggccgctacatctgc 397
>gb|DR060911.1|DR060911 RTNIT1_30_F12.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_30_F12_A029 5', mRNA sequence
Length = 664
Score = 36.2 bits (18), Expect = 3.9
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 236 ggagaagggctacacagt 253
||||||||||||||||||
Sbjct: 267 ggagaagggctacacagt 284
>gb|DR088561.1|DR088561 RTAL1_2_F05.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_2_F05_A029 5', mRNA sequence
Length = 374
Score = 36.2 bits (18), Expect = 3.9
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 179 ggtttgcgtgaccggagctggagggt 204
|||||||||||| ||||| |||||||
Sbjct: 19 ggtttgcgtgacaggagcaggagggt 44
>gb|DR093353.1|DR093353 STRR1_7_E10.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_7_E10_A033 5', mRNA sequence
Length = 931
Score = 36.2 bits (18), Expect = 3.9
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 179 ggtttgcgtgaccggagctggagggt 204
|||||||||||| ||||| |||||||
Sbjct: 26 ggtttgcgtgacaggagcaggagggt 51
>gb|DR099636.1|DR099636 STRR1_57_B04.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_57_B04_A033 3', mRNA sequence
Length = 761
Score = 36.2 bits (18), Expect = 3.9
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 179 ggtttgcgtgaccggagctggagggt 204
|||||||||||| ||||| |||||||
Sbjct: 726 ggtttgcgtgacaggagcaggagggt 701
>gb|DR110492.1|DR110492 RTS1_11_E07.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_11_E07_A029 3', mRNA sequence
Length = 731
Score = 36.2 bits (18), Expect = 3.9
Identities = 36/42 (85%)
Strand = Plus / Minus
Query: 187 tgaccggagctggagggttcattgcctcctggctcgtcaagc 228
|||| ||||||| ||| ||| | |||||||||||||| ||||
Sbjct: 617 tgacgggagctgcaggtttcgtggcctcctggctcgtaaagc 576
>gb|DR164969.1|DR164969 RTPHOS1_1_B08.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_1_B08_A029 5', mRNA sequence
Length = 796
Score = 36.2 bits (18), Expect = 3.9
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 876 cacggccgctacatctgc 893
||||||||||||||||||
Sbjct: 679 cacggccgctacatctgc 696
>gb|DR167692.1|DR167692 RTPHOS1_20_A09.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_20_A09_A029 5', mRNA sequence
Length = 748
Score = 36.2 bits (18), Expect = 3.9
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 179 ggtttgcgtgaccggagctggagggt 204
|||||||||||| ||||| |||||||
Sbjct: 19 ggtttgcgtgacaggagcaggagggt 44
>gb|DR690547.1|DR690547 EST1080633 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACW35 3' end, mRNA sequence
Length = 647
Score = 36.2 bits (18), Expect = 3.9
Identities = 36/42 (85%)
Strand = Plus / Plus
Query: 186 gtgaccggagctggagggttcattgcctcctggctcgtcaag 227
||||| ||||| || || ||||||||||| ||||| ||||||
Sbjct: 17 gtgactggagcagggggattcattgcctcatggctggtcaag 58
>gb|DR690997.1|DR690997 EST1081083 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD262 3' end, mRNA sequence
Length = 665
Score = 36.2 bits (18), Expect = 3.9
Identities = 39/46 (84%)
Strand = Plus / Plus
Query: 586 ggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
||||| |||| || ||||||||| | || ||||||||||||||||
Sbjct: 573 ggagcaaccttgactattgcaaggagacaaagaactggtactgcta 618
>gb|DR745154.1|DR745154 RTCU1_27_H11.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_27_H11_A029 3', mRNA sequence
Length = 691
Score = 36.2 bits (18), Expect = 3.9
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 179 ggtttgcgtgaccggagctggagggt 204
|||||||||||| ||||| |||||||
Sbjct: 640 ggtttgcgtgacaggagcaggagggt 615
>gb|DT636149.1|DT636149 EST1151080 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGO53 3' end, mRNA sequence
Length = 833
Score = 36.2 bits (18), Expect = 3.9
Identities = 36/42 (85%)
Strand = Plus / Plus
Query: 186 gtgaccggagctggagggttcattgcctcctggctcgtcaag 227
||||| ||||| || || ||||||||||| ||||| ||||||
Sbjct: 147 gtgactggagcagggggattcattgcctcatggctggtcaag 188
Database: Pinus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:25 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 125,163
Number of Sequences: 355925
Number of extensions: 125163
Number of successful extensions: 31585
Number of sequences better than 10.0: 115
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31408
Number of HSP's gapped (non-prelim): 177
length of query: 1466
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1447
effective length of database: 210,514,662
effective search space: 304614715914
effective search space used: 304614715914
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)