BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8616263.2.1
(509 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX254102.1|BX254102 BX254102 Pinus pinaster differenciat... 48 3e-004
gb|AW985448.1|AW985448 NXNV_136_F10_F Nsf Xylem Normal wood... 48 3e-004
gb|BE496367.1|BE496367 NXCI_017_A06_F NXCI (Nsf Xylem Compr... 48 3e-004
gb|CR354657.1|CR354657 CR354657 Pinus pinaster differenciat... 48 3e-004
gb|AF132121.1|AF132121 Pinus taeda laccase (Lac3) mRNA, com... 48 3e-004
gb|AF132123.1|AF132123 Pinus taeda laccase (Lac5) mRNA, com... 48 3e-004
dbj|BD224358.1| Materials and methods for the modification ... 48 3e-004
dbj|BD224418.1| Materials and methods for the modification ... 48 3e-004
gb|BE458054.1|BE458054 NXCI_005_C10_F NXCI (Nsf Xylem Compr... 46 0.001
gb|BE758635.1|BE758635 NXCI_069_D05_F NXCI (Nsf Xylem Compr... 46 0.001
gb|BF220791.1|BF220791 NXCI_150_H07_F NXCI (Nsf Xylem Compr... 46 0.001
gb|AI812943.1|AI812943 22G11 Pine Lambda Zap Xylem library ... 44 0.005
gb|BX251790.1|BX251790 BX251790 Pinus pinaster differenciat... 42 0.022
gb|BX253281.1|BX253281 BX253281 Pinus pinaster differenciat... 42 0.022
gb|BX253355.1|BX253355 BX253355 Pinus pinaster differenciat... 42 0.022
gb|AI812970.1|AI812970 2B6 Pine Lambda Zap Xylem library Pi... 40 0.085
gb|AW869838.1|AW869838 NXNV_122_A12_F Nsf Xylem Normal wood... 40 0.085
gb|BE187346.1|BE187346 NXNV_162_G09_F Nsf Xylem Normal wood... 40 0.085
gb|BE996791.1|BE996791 NXCI_101_B03_F NXCI (Nsf Xylem Compr... 40 0.085
gb|CO362368.1|CO362368 RTK1_3_D05.b1_A029 Roots minus potas... 40 0.085
gb|CV035707.1|CV035707 RTNACL1_41_H12.g1_A029 Roots plus ad... 40 0.085
gb|AF132126.1|AF132126 Pinus taeda laccase (Lac8) mRNA, com... 40 0.085
gb|BX250308.1|BX250308 BX250308 Pinus pinaster differenciat... 38 0.34
gb|BX250739.1|BX250739 BX250739 Pinus pinaster differenciat... 38 0.34
gb|BX252529.1|BX252529 BX252529 Pinus pinaster differenciat... 38 0.34
gb|BE187286.1|BE187286 NXNV_162_A10_F Nsf Xylem Normal wood... 38 0.34
gb|BI202922.1|BI202922 NXPV_092_E06_F NXPV (Nsf Xylem Plani... 38 0.34
gb|BQ701805.1|BQ701805 NXSI_120_G05_F NXSI (Nsf Xylem Side ... 38 0.34
gb|CF396215.1|CF396215 RTDS2_15_G11.g1_A021 Drought-stresse... 38 0.34
gb|CF398883.1|CF398883 RTDS3_11_G12.b1_A022 Drought-stresse... 38 0.34
gb|CF398957.1|CF398957 RTDS3_11_G12.g1_A022 Drought-stresse... 38 0.34
gb|CO200210.1|CO200210 GEO2_6_C07.b1_A032 Root gravitropism... 38 0.34
gb|CO200292.1|CO200292 GEO2_6_C07.g1_A032 Root gravitropism... 38 0.34
gb|CO361823.1|CO361823 NDL2_7_G07.b1_A029 Needles control 2... 38 0.34
gb|DR089078.1|DR089078 RTAL1_6_A01.g1_A029 Roots plus added... 38 0.34
gb|AF132125.1|AF132125 Pinus taeda laccase (Lac7) mRNA, com... 38 0.34
gb|AF132122.1|AF132122 Pinus taeda laccase (Lac4) mRNA, com... 38 0.34
>gb|BX254102.1|BX254102 BX254102 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP093D01, mRNA sequence
Length = 426
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 368 cctccaaatggcaatgcatgaaccaaaccccggggttgtc 407
||||||| || ||||||||||||||||| || ||||||||
Sbjct: 95 cctccaagtgacaatgcatgaaccaaacgcctgggttgtc 134
>gb|AW985448.1|AW985448 NXNV_136_F10_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_136_F10 5' similar to Arabidopsis thaliana
sequence At5g01190 laccase - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 480
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 368 cctccaaatggcaatgcatgaaccaaaccccggggttgtc 407
|||||||||| || ||||||||||||||||| || |||||
Sbjct: 134 cctccaaatgacagtgcatgaaccaaacccctggattgtc 95
>gb|BE496367.1|BE496367 NXCI_017_A06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_017_A06 5' similar to Arabidopsis
thaliana sequence At2g38080 putative diphenol oxidase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 572
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 368 cctccaaatggcaatgcatgaaccaaaccccggggttgtc 407
|||||||||| || ||||||||||||||||| || |||||
Sbjct: 267 cctccaaatgacagtgcatgaaccaaacccctggattgtc 228
>gb|CR354657.1|CR354657 CR354657 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 124E08, mRNA sequence
Length = 777
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 368 cctccaaatggcaatgcatgaaccaaaccccggggttgtc 407
||||||||||||| ||||||||||| ||||| || |||||
Sbjct: 682 cctccaaatggcagtgcatgaaccacacccctggattgtc 643
>gb|AF132121.1|AF132121 Pinus taeda laccase (Lac3) mRNA, complete cds
Length = 2134
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 368 cctccaaatggcaatgcatgaaccaaaccccggggttgtc 407
||||||| || ||||||||||||||||| || ||||||||
Sbjct: 1709 cctccaagtgacaatgcatgaaccaaacgcctgggttgtc 1670
>gb|AF132123.1|AF132123 Pinus taeda laccase (Lac5) mRNA, complete cds
Length = 2090
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 368 cctccaaatggcaatgcatgaaccaaaccccggggttgtc 407
|||||||||| || ||||||||||||||||| || |||||
Sbjct: 1711 cctccaaatgacagtgcatgaaccaaacccctggattgtc 1672
>dbj|BD224358.1| Materials and methods for the modification of plant lignin content
Length = 489
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 368 cctccaaatggcaatgcatgaaccaaaccccggggttgtc 407
|||||||||| || ||||||||||||||||| || |||||
Sbjct: 402 cctccaaatgacagtgcatgaaccaaacccctggattgtc 363
>dbj|BD224418.1| Materials and methods for the modification of plant lignin content
Length = 413
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 368 cctccaaatggcaatgcatgaaccaaaccccggggttgtc 407
|||||||||| || ||||||||||||||||| || |||||
Sbjct: 363 cctccaaatgacagtgcatgaaccaaacccctggattgtc 324
>gb|BE458054.1|BE458054 NXCI_005_C10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_005_C10 5' similar to Arabidopsis
thaliana sequence At5g60020 laccase - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 400
Score = 46.1 bits (23), Expect = 0.001
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 370 tccaaatggcaatgcatgaaccaaaccccggggttgtcggcgaggaa 416
||||| ||||||||||||||||| || || || ||||||||| ||||
Sbjct: 286 tccaagtggcaatgcatgaaccatacacctggattgtcggcgcggaa 240
>gb|BE758635.1|BE758635 NXCI_069_D05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_069_D05 5' similar to Arabidopsis
thaliana sequence At5g60020 laccase - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 487
Score = 46.1 bits (23), Expect = 0.001
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 370 tccaaatggcaatgcatgaaccaaaccccggggttgtcggcgaggaa 416
||||| ||||||||||||||||| || || || ||||||||| ||||
Sbjct: 367 tccaagtggcaatgcatgaaccacacacctggattgtcggcgcggaa 321
>gb|BF220791.1|BF220791 NXCI_150_H07_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_150_H07 5' similar to Arabidopsis
thaliana sequence At5g60020 laccase - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 256
Score = 46.1 bits (23), Expect = 0.001
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 369 ctccaaatggcaatgcatgaaccaaaccccggggttgtc 407
||||||||| || ||||||||||||||||| || |||||
Sbjct: 205 ctccaaatgacagtgcatgaaccaaacccctggattgtc 167
>gb|AI812943.1|AI812943 22G11 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 479
Score = 44.1 bits (22), Expect = 0.005
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 368 cctccaaatggcaatgcatgaaccaaaccc 397
|||||||||| || ||||||||||||||||
Sbjct: 370 cctccaaatgacagtgcatgaaccaaaccc 341
>gb|BX251790.1|BX251790 BX251790 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP055E03 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 673
Score = 42.1 bits (21), Expect = 0.022
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 352 ccccatgttgtgtgcgcctccaaatggcaatgcatgaacca 392
||||||| |||||| |||||||||| || |||||||||||
Sbjct: 489 ccccatgatgtgtgaacctccaaatgacagtgcatgaacca 449
>gb|BX253281.1|BX253281 BX253281 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP080F08 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 667
Score = 42.1 bits (21), Expect = 0.022
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 352 ccccatgttgtgtgcgcctccaaatggcaatgcatgaacca 392
||||||| |||||| |||||||||| || |||||||||||
Sbjct: 300 ccccatgatgtgtgaacctccaaatgacagtgcatgaacca 260
>gb|BX253355.1|BX253355 BX253355 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP082A04 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 680
Score = 42.1 bits (21), Expect = 0.022
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 352 ccccatgttgtgtgcgcctccaaatggcaatgcatgaacca 392
||||||| |||||| |||||||||| || |||||||||||
Sbjct: 489 ccccatgatgtgtgaacctccaaatgacagtgcatgaacca 449
>gb|AI812970.1|AI812970 2B6 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 402
Score = 40.1 bits (20), Expect = 0.085
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 368 cctccaaatggcaatgcatgaaccaaac 395
|||||||||| || ||||||||||||||
Sbjct: 28 cctccaaatgacagtgcatgaaccaaac 1
>gb|AW869838.1|AW869838 NXNV_122_A12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_122_A12 5' similar to Arabidopsis thaliana
sequence At5g01190 laccase - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 454
Score = 40.1 bits (20), Expect = 0.085
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 368 cctccaaatggcaatgcatgaaccaaaccccggggttgtc 407
|||||||||| || ||||||||||| ||||| || |||||
Sbjct: 94 cctccaaatgacagtgcatgaaccacacccctggattgtc 55
>gb|BE187346.1|BE187346 NXNV_162_G09_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_162_G09 5' similar to Arabidopsis thaliana
sequence At5g01190 laccase - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 456
Score = 40.1 bits (20), Expect = 0.085
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 368 cctccaaatggcaatgcatgaaccaaaccccggggttgtc 407
|||||||||| || ||||||||||| ||||| || |||||
Sbjct: 137 cctccaaatgacagtgcatgaaccacacccctggattgtc 98
>gb|BE996791.1|BE996791 NXCI_101_B03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_101_B03 5' similar to Arabidopsis
thaliana sequence At5g01190 laccase - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 390
Score = 40.1 bits (20), Expect = 0.085
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 368 cctccaaatggcaatgcatgaaccaaaccccggggttgtc 407
|||||||||| || ||||||||||| ||||| || |||||
Sbjct: 89 cctccaaatgacagtgcatgaaccacacccctggattgtc 50
>gb|CO362368.1|CO362368 RTK1_3_D05.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_3_D05_A029 3', mRNA sequence
Length = 691
Score = 40.1 bits (20), Expect = 0.085
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 352 ccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
||||||||||||||| | || | ||| |||||||| ||||||||
Sbjct: 467 ccccatgttgtgtgcacttctagatgacaatgcataaaccaaac 424
>gb|CV035707.1|CV035707 RTNACL1_41_H12.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_41_H12_A029 5', mRNA sequence
Length = 756
Score = 40.1 bits (20), Expect = 0.085
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 352 ccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
||||||||||||||| | || | ||| |||||||| ||||||||
Sbjct: 683 ccccatgttgtgtgcacttctagatgacaatgcataaaccaaac 640
>gb|AF132126.1|AF132126 Pinus taeda laccase (Lac8) mRNA, complete cds
Length = 1924
Score = 40.1 bits (20), Expect = 0.085
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 352 ccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
||||||||||||||| | || | ||| |||||||| ||||||||
Sbjct: 1700 ccccatgttgtgtgcacttctagatgacaatgcataaaccaaac 1657
>gb|BX250308.1|BX250308 BX250308 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP035B10 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 710
Score = 38.2 bits (19), Expect = 0.34
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 370 tccaaatggcaatgcatgaacca 392
||||| |||||||||||||||||
Sbjct: 496 tccaagtggcaatgcatgaacca 474
>gb|BX250739.1|BX250739 BX250739 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP040F08 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 630
Score = 38.2 bits (19), Expect = 0.34
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 352 ccccatgttgtgtgcgcctccaaatggcaatgcat 386
||||||||| ||||| | ||||| |||||||||||
Sbjct: 320 ccccatgttatgtgcacgtccaagtggcaatgcat 286
>gb|BX252529.1|BX252529 BX252529 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP066B01 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 665
Score = 38.2 bits (19), Expect = 0.34
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 370 tccaaatggcaatgcatgaacca 392
||||| |||||||||||||||||
Sbjct: 622 tccaagtggcaatgcatgaacca 600
>gb|BE187286.1|BE187286 NXNV_162_A10_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_162_A10 5' similar to Arabidopsis thaliana
sequence At2g38080 putative diphenol oxidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 406
Score = 38.2 bits (19), Expect = 0.34
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 368 cctccaaatggcaatgcatgaaccaaacccc 398
|||||||||| || ||||||||||| |||||
Sbjct: 39 cctccaaatgacagtgcatgaaccacacccc 9
>gb|BI202922.1|BI202922 NXPV_092_E06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_092_E06 5' similar to Arabidopsis
thaliana sequence At5g03260 laccase (diphenol
oxidase)-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 535
Score = 38.2 bits (19), Expect = 0.34
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 442 ggcacgccgacggtgttgcgctc 464
||||||||||| |||||||||||
Sbjct: 171 ggcacgccgacagtgttgcgctc 149
>gb|BQ701805.1|BQ701805 NXSI_120_G05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_120_G05 5' similar to Arabidopsis thaliana
sequence At5g03260 laccase (diphenol oxidase)-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 545
Score = 38.2 bits (19), Expect = 0.34
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 442 ggcacgccgacggtgttgcgctc 464
||||||||||| |||||||||||
Sbjct: 398 ggcacgccgacagtgttgcgctc 376
>gb|CF396215.1|CF396215 RTDS2_15_G11.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_15_G11_A021 5', mRNA sequence
Length = 638
Score = 38.2 bits (19), Expect = 0.34
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 442 ggcacgccgacggtgttgcgctc 464
||||||||||| |||||||||||
Sbjct: 626 ggcacgccgacagtgttgcgctc 604
>gb|CF398883.1|CF398883 RTDS3_11_G12.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_11_G12_A022 3', mRNA sequence
Length = 640
Score = 38.2 bits (19), Expect = 0.34
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 442 ggcacgccgacggtgttgcgctc 464
||||||||||| |||||||||||
Sbjct: 134 ggcacgccgacagtgttgcgctc 112
>gb|CF398957.1|CF398957 RTDS3_11_G12.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_11_G12_A022 5', mRNA sequence
Length = 727
Score = 38.2 bits (19), Expect = 0.34
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 442 ggcacgccgacggtgttgcgctc 464
||||||||||| |||||||||||
Sbjct: 614 ggcacgccgacagtgttgcgctc 592
>gb|CO200210.1|CO200210 GEO2_6_C07.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_C07_A032 3', mRNA sequence
Length = 851
Score = 38.2 bits (19), Expect = 0.34
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 442 ggcacgccgacggtgttgcgctc 464
||||||||||| |||||||||||
Sbjct: 323 ggcacgccgacagtgttgcgctc 301
>gb|CO200292.1|CO200292 GEO2_6_C07.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_C07_A032 5', mRNA sequence
Length = 882
Score = 38.2 bits (19), Expect = 0.34
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 442 ggcacgccgacggtgttgcgctc 464
||||||||||| |||||||||||
Sbjct: 679 ggcacgccgacagtgttgcgctc 657
>gb|CO361823.1|CO361823 NDL2_7_G07.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_7_G07_A029 3', mRNA sequence
Length = 660
Score = 38.2 bits (19), Expect = 0.34
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 442 ggcacgccgacggtgttgcgctc 464
||||||||||| |||||||||||
Sbjct: 138 ggcacgccgacagtgttgcgctc 116
>gb|DR089078.1|DR089078 RTAL1_6_A01.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_6_A01_A029 5', mRNA sequence
Length = 749
Score = 38.2 bits (19), Expect = 0.34
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 442 ggcacgccgacggtgttgcgctc 464
||||||||||| |||||||||||
Sbjct: 431 ggcacgccgacagtgttgcgctc 453
>gb|AF132125.1|AF132125 Pinus taeda laccase (Lac7) mRNA, complete cds
Length = 2088
Score = 38.2 bits (19), Expect = 0.34
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 442 ggcacgccgacggtgttgcgctc 464
||||||||||| |||||||||||
Sbjct: 1563 ggcacgccgacagtgttgcgctc 1541
>gb|AF132122.1|AF132122 Pinus taeda laccase (Lac4) mRNA, complete cds
Length = 2208
Score = 38.2 bits (19), Expect = 0.34
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 352 ccccatgttgtgtgcgcctccaaatggcaatgcat 386
||||||||| ||||| | ||||| |||||||||||
Sbjct: 1741 ccccatgttatgtgcacgtccaagtggcaatgcat 1707
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 49,653
Number of Sequences: 355925
Number of extensions: 49653
Number of successful extensions: 14509
Number of sequences better than 0.5: 37
Number of HSP's better than 0.5 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14460
Number of HSP's gapped (non-prelim): 49
length of query: 509
length of database: 217,277,237
effective HSP length: 19
effective length of query: 490
effective length of database: 210,514,662
effective search space: 103152184380
effective search space used: 103152184380
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)