BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010573.2.1
(1223 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX254013.1|BX254013 BX254013 Pinus pinaster differenciat... 42 0.053
gb|BF778402.1|BF778402 NXSI_082_H01_F NXSI (Nsf Xylem Side ... 42 0.053
gb|BM367852.1|BM367852 NXLV_059_A03_F NXLV (Nsf Xylem Late ... 42 0.053
gb|BQ701367.1|BQ701367 NXSI_063_D03_F NXSI (Nsf Xylem Side ... 42 0.053
gb|BQ702509.1|BQ702509 NXSI_129_D10_F NXSI (Nsf Xylem Side ... 42 0.053
gb|CF387264.1|CF387264 RTDR1_11_H07.g1_A015 Loblolly pine r... 42 0.053
gb|CF400128.1|CF400128 RTWW1_3_C08.g1_A015 Well-watered lob... 42 0.053
gb|CF400432.1|CF400432 RTWW1_5_B03.g1_A015 Well-watered lob... 42 0.053
gb|CF401695.1|CF401695 RTWW1_14_C10.g1_A015 Well-watered lo... 42 0.053
gb|CF402712.1|CF402712 RTWW1_22_F11.b1_A015 Well-watered lo... 42 0.053
gb|CF402748.1|CF402748 RTWW1_22_F11.g1_A015 Well-watered lo... 42 0.053
gb|CF475135.1|CF475135 RTWW2_14_D03.b1_A021 Well-watered lo... 42 0.053
gb|CF475177.1|CF475177 RTWW2_14_D03.g1_A021 Well-watered lo... 42 0.053
gb|CF664045.1|CF664045 RTCNT1_7_A06.b1_A029 Root control Pi... 42 0.053
gb|CF664119.1|CF664119 RTCNT1_7_A06.g1_A029 Root control Pi... 42 0.053
gb|CO363007.1|CO363007 RTK1_7_C06.b1_A029 Roots minus potas... 42 0.053
gb|CO363086.1|CO363086 RTK1_7_C06.g1_A029 Roots minus potas... 42 0.053
gb|DR014413.1|DR014413 HEAT1_49_G08.b1_A029 Root at 37 C fo... 42 0.053
gb|DR014494.1|DR014494 HEAT1_49_G08.g1_A029 Root at 37 C fo... 42 0.053
gb|DR080673.1|DR080673 RTFEPL1_24_H08.b1_A029 Roots plus ad... 42 0.053
gb|DR744308.1|DR744308 RTCU1_21_D04.g1_A029 Roots plus adde... 42 0.053
dbj|BD236689.1| Materials and method for modification of pl... 42 0.053
dbj|BD236724.1| Materials and method for modification of pl... 42 0.053
dbj|BD236726.1| Materials and method for modification of pl... 42 0.053
dbj|BD236738.1| Materials and method for modification of pl... 42 0.053
dbj|BD236758.1| Materials and method for modification of pl... 42 0.053
dbj|BD236765.1| Materials and method for modification of pl... 42 0.053
gb|CF400467.1|CF400467 RTWW1_5_D01.g1_A015 Well-watered lob... 40 0.21
>gb|BX254013.1|BX254013 BX254013 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP092B10, mRNA sequence
Length = 652
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 219 accgactgggccaaggcgcccttcatcgc 247
>gb|BF778402.1|BF778402 NXSI_082_H01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_082_H01 5' similar to Arabidopsis thaliana
sequence At5g13870 endoxyloglucan transferase
(dbj|BAA81669.1) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 431
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 222 accgactgggccaaggcgcccttcatcgc 250
>gb|BM367852.1|BM367852 NXLV_059_A03_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_059_A03 5' similar to Arabidopsis thaliana
sequence At5g13870 endoxyloglucan transferase
(dbj|BAA81669.1) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 508
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 31 accgactgggccaaggcgcccttcatcgc 59
>gb|BQ701367.1|BQ701367 NXSI_063_D03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_063_D03 5' similar to Arabidopsis thaliana
sequence At5g13870 endoxyloglucan transferase
(dbj|BAA81669.1) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 334
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 222 accgactgggccaaggcgcccttcatcgc 250
>gb|BQ702509.1|BQ702509 NXSI_129_D10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_129_D10 5' similar to Arabidopsis thaliana
sequence At5g13870 endoxyloglucan transferase
(dbj|BAA81669.1) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 525
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 222 accgactgggccaaggcgcccttcatcgc 250
>gb|CF387264.1|CF387264 RTDR1_11_H07.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_11_H07_A015 5', mRNA
sequence
Length = 704
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 612 accgactgggccaaggcgcccttcatcgc 640
>gb|CF400128.1|CF400128 RTWW1_3_C08.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_3_C08_A015 5', mRNA sequence
Length = 762
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 503 accgactgggccaaggcgcccttcatcgc 475
>gb|CF400432.1|CF400432 RTWW1_5_B03.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_5_B03_A015 5', mRNA sequence
Length = 803
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 498 accgactgggccaaggcgcccttcatcgc 526
>gb|CF401695.1|CF401695 RTWW1_14_C10.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_14_C10_A015 5', mRNA sequence
Length = 717
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 343 accgactgggccaaggcgcccttcatcgc 371
>gb|CF402712.1|CF402712 RTWW1_22_F11.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_22_F11_A015 3', mRNA sequence
Length = 534
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 46 accgactgggccaaggcgcccttcatcgc 74
>gb|CF402748.1|CF402748 RTWW1_22_F11.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_22_F11_A015 5', mRNA sequence
Length = 733
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 643 accgactgggccaaggcgcccttcatcgc 671
>gb|CF475135.1|CF475135 RTWW2_14_D03.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_14_D03_A021 3', mRNA sequence
Length = 520
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 45 accgactgggccaaggcgcccttcatcgc 73
>gb|CF475177.1|CF475177 RTWW2_14_D03.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_14_D03_A021 5', mRNA sequence
Length = 596
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 216 accgactgggccaaggcgcccttcatcgc 244
>gb|CF664045.1|CF664045 RTCNT1_7_A06.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_7_A06_A029 3', mRNA sequence
Length = 692
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 105 accgactgggccaaggcgcccttcatcgc 133
>gb|CF664119.1|CF664119 RTCNT1_7_A06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_7_A06_A029 5', mRNA sequence
Length = 442
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 147 accgactgggccaaggcgcccttcatcgc 175
>gb|CO363007.1|CO363007 RTK1_7_C06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_7_C06_A029 3', mRNA sequence
Length = 746
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 285 accgactgggccaaggcgcccttcatcgc 313
>gb|CO363086.1|CO363086 RTK1_7_C06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_7_C06_A029 5', mRNA sequence
Length = 743
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 644 accgactgggccaaggcgcccttcatcgc 672
>gb|DR014413.1|DR014413 HEAT1_49_G08.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_49_G08_A029 3', mRNA sequence
Length = 798
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 328 accgactgggccaaggcgcccttcatcgc 356
>gb|DR014494.1|DR014494 HEAT1_49_G08.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_49_G08_A029 5', mRNA sequence
Length = 947
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 665 accgactgggccaaggcgcccttcatcgc 693
>gb|DR080673.1|DR080673 RTFEPL1_24_H08.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_24_H08_A029 3', mRNA sequence
Length = 755
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 198 accgactgggccaaggcgcccttcatcgc 170
>gb|DR744308.1|DR744308 RTCU1_21_D04.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_21_D04_A029 5', mRNA sequence
Length = 834
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 453 accgactgggccaaggcgcccttcatcgc 425
>dbj|BD236689.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 370
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 262 accgactgggccaaggcgcccttcatcgc 290
>dbj|BD236724.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 283
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 218 accgactgggccaaggcgcccttcatcgc 246
>dbj|BD236726.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 316
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 217 accgactgggccaaggcgcccttcatcgc 245
>dbj|BD236738.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 234
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 81 accgactgggccaaggcgcccttcatcgc 109
>dbj|BD236758.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 434
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 116 accgactgggccaaggcgcccttcatcgc 144
>dbj|BD236765.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 376
Score = 42.1 bits (21), Expect = 0.053
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttcgtcgc 749
||||||||| |||||||||||||| ||||
Sbjct: 315 accgactgggccaaggcgcccttcatcgc 343
>gb|CF400467.1|CF400467 RTWW1_5_D01.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_5_D01_A015 5', mRNA sequence
Length = 675
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 721 accgactggtccaaggcgcccttc 744
||||||||| ||||||||||||||
Sbjct: 648 accgactgggccaaggcgcccttc 671
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 101,318
Number of Sequences: 355925
Number of extensions: 101318
Number of successful extensions: 27508
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27459
Number of HSP's gapped (non-prelim): 49
length of query: 1223
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1204
effective length of database: 210,514,662
effective search space: 253459653048
effective search space used: 253459653048
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)