BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 7297817.2.1
(687 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR111079.1|DR111079 RTS1_15_C09.b1_A029 Roots minus sulf... 44 0.007
gb|DR089114.1|DR089114 RTAL1_6_D04.g1_A029 Roots plus added... 40 0.12
gb|DR744133.1|DR744133 RTCU1_20_A03.g1_A029 Roots plus adde... 40 0.12
gb|AF324782.1| Pinus taeda clone PtTX4093 microsatellite se... 40 0.12
gb|AF441567.1| Pinus taeda PtTX4138 microsatellite sequence 40 0.12
gb|CZ894779.1|CZ894779 204_1_12063485_3_37680_063 Pine meth... 38 0.46
gb|AA556492.1|AA556492 347 Loblolly pine C Pinus taeda cDNA... 38 0.46
gb|BQ698554.1|BQ698554 NXPV_071_D02_F NXPV (Nsf Xylem Plani... 38 0.46
gb|DR070392.1|DR070392 RTDK1_13_B07.b1_A029 Roots, dark Pin... 38 0.46
gb|DR070467.1|DR070467 RTDK1_13_B07.g1_A029 Roots, dark Pin... 38 0.46
>gb|DR111079.1|DR111079 RTS1_15_C09.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_15_C09_A029 3', mRNA sequence
Length = 765
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 663 cctcctcctcttcttcttcctt 684
||||||||||||||||||||||
Sbjct: 380 cctcctcctcttcttcttcctt 359
>gb|DR089114.1|DR089114 RTAL1_6_D04.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_6_D04_A029 5', mRNA sequence
Length = 492
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 222 tcctcctcctcttcttcttc 241
>gb|DR744133.1|DR744133 RTCU1_20_A03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_20_A03_A029 5', mRNA sequence
Length = 728
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 675 tcctcctcctcttcttcttc 656
>gb|AF324782.1| Pinus taeda clone PtTX4093 microsatellite sequence
Length = 429
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 218 tcctcctcctcttcttcttc 237
>gb|AF441567.1| Pinus taeda PtTX4138 microsatellite sequence
Length = 429
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 218 tcctcctcctcttcttcttc 237
>gb|CZ894779.1|CZ894779 204_1_12063485_3_37680_063 Pine methylation filtered library
(LibID: 204) Pinus taeda genomic, DNA sequence
Length = 770
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 208 agtagtagtagtatatata 226
|||||||||||||||||||
Sbjct: 172 agtagtagtagtatatata 154
>gb|AA556492.1|AA556492 347 Loblolly pine C Pinus taeda cDNA clone 4C6C, mRNA sequence
Length = 698
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 660 gatcctcctcctcttcttc 678
|||||||||||||||||||
Sbjct: 263 gatcctcctcctcttcttc 281
>gb|BQ698554.1|BQ698554 NXPV_071_D02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_071_D02 5', mRNA sequence
Length = 487
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 667 ctcctcttcttcttccttg 685
|||||||||||||||||||
Sbjct: 123 ctcctcttcttcttccttg 105
>gb|DR070392.1|DR070392 RTDK1_13_B07.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_13_B07_A029 3', mRNA sequence
Length = 688
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 660 gatcctcctcctcttcttc 678
|||||||||||||||||||
Sbjct: 77 gatcctcctcctcttcttc 95
>gb|DR070467.1|DR070467 RTDK1_13_B07.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_13_B07_A029 5', mRNA sequence
Length = 758
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 660 gatcctcctcctcttcttc 678
|||||||||||||||||||
Sbjct: 647 gatcctcctcctcttcttc 665
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 98,372
Number of Sequences: 355925
Number of extensions: 98372
Number of successful extensions: 35896
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35874
Number of HSP's gapped (non-prelim): 22
length of query: 687
length of database: 217,277,237
effective HSP length: 19
effective length of query: 668
effective length of database: 210,514,662
effective search space: 140623794216
effective search space used: 140623794216
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)