BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 6293482.2.1
         (2042 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO201690.1|CO201690  RTCNT2_7_B02.g1_A029 Root control 2 ...    48   0.001
gb|DR180240.1|DR180240  RTMNUT1_27_G10.b1_A029 Roots minus m...    40   0.35 
gb|DR386257.1|DR386257  RTHG1_14_A02.b1_A029 Roots plus adde...    40   0.35 
gb|DR387368.1|DR387368  RTHG1_21_F12.b1_A029 Roots plus adde...    40   0.35 

>gb|CO201690.1|CO201690 RTCNT2_7_B02.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
            RTCNT2_7_B02_A029 5', mRNA sequence
          Length = 714

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 1742 cgccgacgccgacgccgacgctgc 1765
            ||||||||||||||||||||||||
Sbjct: 256  cgccgacgccgacgccgacgctgc 279




 Score = 40.1 bits (20), Expect = 0.35
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1743 gccgacgccgacgccgacgc 1762
            ||||||||||||||||||||
Sbjct: 251  gccgacgccgacgccgacgc 270



>gb|DR180240.1|DR180240 RTMNUT1_27_G10.b1_A029 Roots minus micronutrients Pinus taeda cDNA
           clone RTMNUT1_27_G10_A029 3', mRNA sequence
          Length = 819

 Score = 40.1 bits (20), Expect = 0.35
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 444 gggcacatcctccgcccggacccgaacg 471
           ||||||||||||| ||||| ||||||||
Sbjct: 305 gggcacatcctcctcccggtcccgaacg 278



>gb|DR386257.1|DR386257 RTHG1_14_A02.b1_A029 Roots plus added mercury Pinus taeda cDNA
           clone RTHG1_14_A02_A029 3', mRNA sequence
          Length = 809

 Score = 40.1 bits (20), Expect = 0.35
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 444 gggcacatcctccgcccggacccgaacg 471
           ||||||||||||| ||||| ||||||||
Sbjct: 279 gggcacatcctcctcccggtcccgaacg 252



>gb|DR387368.1|DR387368 RTHG1_21_F12.b1_A029 Roots plus added mercury Pinus taeda cDNA
           clone RTHG1_21_F12_A029 3', mRNA sequence
          Length = 716

 Score = 40.1 bits (20), Expect = 0.35
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 444 gggcacatcctccgcccggacccgaacg 471
           ||||||||||||| ||||| ||||||||
Sbjct: 390 gggcacatcctcctcccggtcccgaacg 363



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 223,452
Number of Sequences: 355925
Number of extensions: 223452
Number of successful extensions: 55461
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55453
Number of HSP's gapped (non-prelim): 7
length of query: 2042
length of database: 217,277,237
effective HSP length: 20
effective length of query: 2022
effective length of database: 210,158,737
effective search space: 424940966214
effective search space used: 424940966214
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)