BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 5705280.3.1
         (980 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CX713785.1|CX713785  RTPQ1_13_C11.b1_A032 Roots treated w...    36   2.6  
gb|DR689896.1|DR689896  EST1079982 Normalized pine embryo li...    36   2.6  
gb|DT635948.1|DT635948  EST1150879 Normalized pine embryo li...    36   2.6  

>gb|CX713785.1|CX713785 RTPQ1_13_C11.b1_A032 Roots treated with paraquat Pinus taeda cDNA
           clone RTPQ1_13_C11_A032 3', mRNA sequence
          Length = 736

 Score = 36.2 bits (18), Expect = 2.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 530 acacaaaacctcaatacc 547
           ||||||||||||||||||
Sbjct: 645 acacaaaacctcaatacc 662



>gb|DR689896.1|DR689896 EST1079982 Normalized pine embryo library, Lib_D Pinus taeda cDNA
           clone PWACO70 3' end, mRNA sequence
          Length = 496

 Score = 36.2 bits (18), Expect = 2.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 530 acacaaaacctcaatacc 547
           ||||||||||||||||||
Sbjct: 223 acacaaaacctcaatacc 206



>gb|DT635948.1|DT635948 EST1150879 Normalized pine embryo library, Lib_D Pinus taeda cDNA
           clone PIMGM39 3' end, mRNA sequence
          Length = 804

 Score = 36.2 bits (18), Expect = 2.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 530 acacaaaacctcaatacc 547
           ||||||||||||||||||
Sbjct: 566 acacaaaacctcaatacc 549



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  May 2, 2006  3:25 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 114,598
Number of Sequences: 355925
Number of extensions: 114598
Number of successful extensions: 29286
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29283
Number of HSP's gapped (non-prelim): 3
length of query: 980
length of database: 217,277,237
effective HSP length: 19
effective length of query: 961
effective length of database: 210,514,662
effective search space: 202304590182
effective search space used: 202304590182
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)