BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5704580.2.1
(721 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR055191.1|DR055191 RTCA1_22_D09.b1_A029 Roots minus cal... 46 0.002
gb|DR055276.1|DR055276 RTCA1_22_D09.g2_A029 Roots minus cal... 46 0.002
>gb|DR055191.1|DR055191 RTCA1_22_D09.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_22_D09_A029 3', mRNA sequence
Length = 773
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 625 atgtagtttttctgagaaaggagatggtcaa 655
|||||||||||||||| ||||||||| ||||
Sbjct: 102 atgtagtttttctgagtaaggagatgatcaa 72
>gb|DR055276.1|DR055276 RTCA1_22_D09.g2_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_22_D09_A029 5', mRNA sequence
Length = 565
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 625 atgtagtttttctgagaaaggagatggtcaa 655
|||||||||||||||| ||||||||| ||||
Sbjct: 211 atgtagtttttctgagtaaggagatgatcaa 181
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 97,795
Number of Sequences: 355925
Number of extensions: 97795
Number of successful extensions: 29162
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29158
Number of HSP's gapped (non-prelim): 4
length of query: 721
length of database: 217,277,237
effective HSP length: 19
effective length of query: 702
effective length of database: 210,514,662
effective search space: 147781292724
effective search space used: 147781292724
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)