BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5110719.2.1
(581 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ699264.1|BQ699264 NXRV121_E06_F NXRV (Nsf Xylem Root w... 74 7e-012
gb|BX666014.1|BX666014 BX666014 RN Pinus pinaster cDNA clon... 46 0.002
gb|DR691451.1|DR691451 EST1081538 Normalized pine embryo li... 44 0.006
gb|DT636570.1|DT636570 EST1151501 Normalized pine embryo li... 44 0.006
gb|BM492554.1|BM492554 NXRV_028_A07_F NXRV (Nsf Xylem Root ... 42 0.025
gb|DN613583.1|DN613583 EST966633 Subtracted pine embryo lib... 42 0.025
gb|BE656999.1|BE656999 NXCI_046_B10_F NXCI (Nsf Xylem Compr... 40 0.098
gb|CF665391.1|CF665391 RTCNT1_15_F03.g1_A029 Root control P... 40 0.098
>gb|BQ699264.1|BQ699264 NXRV121_E06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV121_E06 5' similar to Arabidopsis thaliana
sequence At2g01060 transfactor-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 557
Score = 73.8 bits (37), Expect = 7e-012
Identities = 95/113 (84%), Gaps = 1/113 (0%)
Strand = Plus / Plus
Query: 166 tgcagatggaggtccaaaagcggctgcacgaacagttagaagtacaaaggcagctgcag- 224
||||||||||||||||||| || |||||||| ||| | || ||||||||||| |||||
Sbjct: 285 tgcagatggaggtccaaaaacgtctgcacgagcagattgaggtacaaaggcaattgcagt 344
Query: 225 ttacgaattgaggctcagggaaagtacctccagaagatcatcgaagagcagca 277
|| || |||||||| || || ||||| || ||||||||||| ||||| |||||
Sbjct: 345 ttgcgcattgaggcacaagggaagtatctgcagaagatcattgaagaacagca 397
>gb|BX666014.1|BX666014 BX666014 RN Pinus pinaster cDNA clone RN08F04, mRNA sequence
Length = 613
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 ccatgtaaaaagtcacttgcaga 36
|||||||||||||||||||||||
Sbjct: 131 ccatgtaaaaagtcacttgcaga 153
>gb|DR691451.1|DR691451 EST1081538 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD859 3' end, mRNA sequence
Length = 774
Score = 44.1 bits (22), Expect = 0.006
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 15 catgtaaaaagtcacttgcagaaatacagactagcaaagtat 56
||||||||||| || ||||||||||| |||| |||||||||
Sbjct: 716 catgtaaaaagccatttgcagaaatatcgactcgcaaagtat 757
>gb|DT636570.1|DT636570 EST1151501 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGT36 3' end, mRNA sequence
Length = 788
Score = 44.1 bits (22), Expect = 0.006
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 15 catgtaaaaagtcacttgcagaaatacagactagcaaagtat 56
||||||||||| || ||||||||||| |||| |||||||||
Sbjct: 730 catgtaaaaagccatttgcagaaatatcgactcgcaaagtat 771
>gb|BM492554.1|BM492554 NXRV_028_A07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_028_A07 5' similar to Arabidopsis thaliana
sequence At3g16857 ARR1 protein, putative, 5' partial
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 484
Score = 42.1 bits (21), Expect = 0.025
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 23 aagtcacttgcagaaatacag 43
|||||||||||||||||||||
Sbjct: 378 aagtcacttgcagaaatacag 358
>gb|DN613583.1|DN613583 EST966633 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABU03, mRNA sequence
Length = 886
Score = 42.1 bits (21), Expect = 0.025
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 aagtcacttgcagaaatacag 43
|||||||||||||||||||||
Sbjct: 388 aagtcacttgcagaaatacag 408
>gb|BE656999.1|BE656999 NXCI_046_B10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_046_B10 5', mRNA sequence
Length = 293
Score = 40.1 bits (20), Expect = 0.098
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 agtcacttgcagaaatacag 43
||||||||||||||||||||
Sbjct: 116 agtcacttgcagaaatacag 97
>gb|CF665391.1|CF665391 RTCNT1_15_F03.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_15_F03_A029 5', mRNA sequence
Length = 689
Score = 40.1 bits (20), Expect = 0.098
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 agtcacttgcagaaatacag 43
||||||||||||||||||||
Sbjct: 120 agtcacttgcagaaatacag 101
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 66,817
Number of Sequences: 355925
Number of extensions: 66817
Number of successful extensions: 17375
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17366
Number of HSP's gapped (non-prelim): 8
length of query: 581
length of database: 217,277,237
effective HSP length: 19
effective length of query: 562
effective length of database: 210,514,662
effective search space: 118309240044
effective search space used: 118309240044
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)