BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4679577.2.1
(833 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR020900.1|DR020900 STRS1_40_B08.b1_A034 Shoot tip pitch... 46 0.002
gb|DR020972.1|DR020972 STRS1_40_B08.g1_A034 Shoot tip pitch... 46 0.002
gb|DR100495.1|DR100495 STRR1_64_C09.g1_A033 Stem Response R... 46 0.002
gb|CF385621.1|CF385621 RTDR1_5_D08.b1_A015 Loblolly pine ro... 40 0.14
gb|CF665903.1|CF665903 RTCNT1_19_G06.b1_A029 Root control P... 40 0.14
gb|CF665972.1|CF665972 RTCNT1_19_G06.g1_A029 Root control P... 40 0.14
gb|CO174497.1|CO174497 NDL1_44_H09.b1_A029 Needles control ... 40 0.14
gb|DR011312.1|DR011312 HEAT1_5_A10.b1_A029 Root at 37 C for... 40 0.14
gb|DR011395.1|DR011395 HEAT1_5_A10.g1_A029 Root at 37 C for... 40 0.14
gb|DR017924.1|DR017924 STRS1_19_H02.b1_A034 Shoot tip pitch... 40 0.14
gb|DR018000.1|DR018000 STRS1_19_H02.g1_A034 Shoot tip pitch... 40 0.14
gb|DR018088.1|DR018088 STRS1_20_A02.g1_A034 Shoot tip pitch... 40 0.14
gb|DR020097.1|DR020097 STRS1_34_D02.g1_A034 Shoot tip pitch... 40 0.14
gb|DR021520.1|DR021520 STRS1_45_F02.b1_A034 Shoot tip pitch... 40 0.14
gb|DR021597.1|DR021597 STRS1_45_F02.g1_A034 Shoot tip pitch... 40 0.14
gb|DR051677.1|DR051677 RTBOR1_31_E01.g1_A029 Roots plus add... 40 0.14
gb|DR069442.1|DR069442 RTDK1_7_G02.b1_A029 Roots, dark Pinu... 40 0.14
gb|DR069532.1|DR069532 RTDK1_7_G02.g1_A029 Roots, dark Pinu... 40 0.14
gb|DR094231.1|DR094231 STRR1_13_F11.b1_A033 Stem Response R... 40 0.14
gb|DR094289.1|DR094289 STRR1_13_D07.g1_A033 Stem Response R... 40 0.14
gb|DR094314.1|DR094314 STRR1_13_F11.g1_A033 Stem Response R... 40 0.14
gb|DR097799.1|DR097799 STRR1_37_C10.b1_A033 Stem Response R... 40 0.14
gb|DR097869.1|DR097869 STRR1_37_C10.g1_A033 Stem Response R... 40 0.14
gb|DR098842.1|DR098842 STRR1_48_E12.b1_A033 Stem Response R... 40 0.14
gb|DR098917.1|DR098917 STRR1_48_E12.g1_A033 Stem Response R... 40 0.14
gb|DR160497.1|DR160497 RTFE1_6_H05.b1_A029 Roots minus iron... 40 0.14
gb|DR164407.1|DR164407 RTFE1_48_F02.g1_A029 Roots minus iro... 40 0.14
>gb|DR020900.1|DR020900 STRS1_40_B08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_40_B08_A034 3', mRNA sequence
Length = 583
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 407 gggcagagcatcggcttcgacgggctg 433
||||||||||| |||||||||||||||
Sbjct: 141 gggcagagcataggcttcgacgggctg 167
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 257 ctccgggcagggcttcggcgccac 280
>gb|DR020972.1|DR020972 STRS1_40_B08.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_40_B08_A034 5', mRNA sequence
Length = 577
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 407 gggcagagcatcggcttcgacgggctg 433
||||||||||| |||||||||||||||
Sbjct: 114 gggcagagcataggcttcgacgggctg 140
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 230 ctccgggcagggcttcggcgccac 253
>gb|DR100495.1|DR100495 STRR1_64_C09.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_64_C09_A033 5', mRNA sequence
Length = 544
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 524 tccggccagggcttcggcgccac 546
|||||||||||||||||||||||
Sbjct: 259 tccggccagggcttcggcgccac 237
>gb|CF385621.1|CF385621 RTDR1_5_D08.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_5_D08_A015 3', mRNA
sequence
Length = 534
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 218 ctccgggcagggcttcggcgccac 241
>gb|CF665903.1|CF665903 RTCNT1_19_G06.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_19_G06_A029 3', mRNA sequence
Length = 769
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 56 ctccgggcagggcttcggcgccac 33
>gb|CF665972.1|CF665972 RTCNT1_19_G06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_19_G06_A029 5', mRNA sequence
Length = 534
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 260 ctccgggcagggcttcggcgccac 237
>gb|CO174497.1|CO174497 NDL1_44_H09.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_44_H09_A029 3', mRNA sequence
Length = 653
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 358 ctccgggcagggcttcggcgccac 381
>gb|DR011312.1|DR011312 HEAT1_5_A10.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_5_A10_A029 3', mRNA sequence
Length = 794
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 527 ctccgggcagggcttcggcgccac 550
>gb|DR011395.1|DR011395 HEAT1_5_A10.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_5_A10_A029 5', mRNA sequence
Length = 822
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 555 ctccgggcagggcttcggcgccac 578
>gb|DR017924.1|DR017924 STRS1_19_H02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_19_H02_A034 3', mRNA sequence
Length = 888
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 189 ctccgggcagggcttcggcgccac 166
>gb|DR018000.1|DR018000 STRS1_19_H02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_19_H02_A034 5', mRNA sequence
Length = 773
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 244 ctccgggcagggcttcggcgccac 221
>gb|DR018088.1|DR018088 STRS1_20_A02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_20_A02_A034 5', mRNA sequence
Length = 434
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 246 ctccgggcagggcttcggcgccac 223
>gb|DR020097.1|DR020097 STRS1_34_D02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_34_D02_A034 5', mRNA sequence
Length = 797
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 579 ctccgggcagggcttcggcgccac 602
>gb|DR021520.1|DR021520 STRS1_45_F02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_45_F02_A034 3', mRNA sequence
Length = 820
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 517 ctccgggcagggcttcggcgccac 540
>gb|DR021597.1|DR021597 STRS1_45_F02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_45_F02_A034 5', mRNA sequence
Length = 662
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 489 ctccgggcagggcttcggcgccac 512
>gb|DR051677.1|DR051677 RTBOR1_31_E01.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_31_E01_A029 5', mRNA sequence
Length = 443
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 243 ctccgggcagggcttcggcgccac 220
>gb|DR069442.1|DR069442 RTDK1_7_G02.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_7_G02_A029 3', mRNA sequence
Length = 849
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 528 ctccgggcagggcttcggcgccac 551
>gb|DR069532.1|DR069532 RTDK1_7_G02.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_7_G02_A029 5', mRNA sequence
Length = 905
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 647 ctccgggcagggcttcggcgccac 670
>gb|DR094231.1|DR094231 STRR1_13_F11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_13_F11_A033 3', mRNA sequence
Length = 853
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 132 ctccgggcagggcttcggcgccac 109
>gb|DR094289.1|DR094289 STRR1_13_D07.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_13_D07_A033 5', mRNA sequence
Length = 869
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 690 ctccgggcagggcttcggcgccac 713
>gb|DR094314.1|DR094314 STRR1_13_F11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_13_F11_A033 5', mRNA sequence
Length = 824
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 297 ctccgggcagggcttcggcgccac 274
>gb|DR097799.1|DR097799 STRR1_37_C10.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_37_C10_A033 3', mRNA sequence
Length = 808
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 94 ctccgggcagggcttcggcgccac 71
>gb|DR097869.1|DR097869 STRR1_37_C10.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_37_C10_A033 5', mRNA sequence
Length = 666
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 274 ctccgggcagggcttcggcgccac 251
>gb|DR098842.1|DR098842 STRR1_48_E12.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_48_E12_A033 3', mRNA sequence
Length = 709
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 393 ctccgggcagggcttcggcgccac 416
>gb|DR098917.1|DR098917 STRR1_48_E12.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_48_E12_A033 5', mRNA sequence
Length = 816
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 610 ctccgggcagggcttcggcgccac 633
>gb|DR160497.1|DR160497 RTFE1_6_H05.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_6_H05_A029 3', mRNA sequence
Length = 810
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 494 ctccgggcagggcttcggcgccac 517
>gb|DR164407.1|DR164407 RTFE1_48_F02.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_48_F02_A029 5', mRNA sequence
Length = 836
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 523 ctccggccagggcttcggcgccac 546
|||||| |||||||||||||||||
Sbjct: 263 ctccgggcagggcttcggcgccac 240
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 62,687
Number of Sequences: 355925
Number of extensions: 62687
Number of successful extensions: 15932
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15857
Number of HSP's gapped (non-prelim): 75
length of query: 833
length of database: 217,277,237
effective HSP length: 19
effective length of query: 814
effective length of database: 210,514,662
effective search space: 171358934868
effective search space used: 171358934868
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)