BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4573929.2.1
(691 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX255434.1|BX255434 BX255434 Pinus pinaster differenciat... 44 0.007
gb|BG275620.1|BG275620 NXSI_144_A03_F NXSI (Nsf Xylem Side ... 44 0.007
gb|CF399227.1|CF399227 RTDS3_27_G09.b1_A022 Drought-stresse... 44 0.007
gb|CF669944.1|CF669944 RTCNT1_47_C05.b1_A029 Root control P... 44 0.007
gb|CF669954.1|CF669954 RTCNT1_47_D05.b1_A029 Root control P... 44 0.007
gb|BX678886.1|BX678886 BX678886 RS Pinus pinaster cDNA clon... 44 0.007
gb|CX648482.1|CX648482 COLD1_29_A03.b1_A029 Root cold Pinus... 44 0.007
gb|DR094115.1|DR094115 STRR1_12_C04.g1_A033 Stem Response R... 44 0.007
gb|DR177347.1|DR177347 RTMNUT1_4_F09.g1_A029 Roots minus mi... 44 0.007
gb|DR178249.1|DR178249 RTMNUT1_10_G12.b1_A029 Roots minus m... 44 0.007
gb|DR744847.1|DR744847 RTCU1_25_G06.b1_A029 Roots plus adde... 44 0.007
gb|DR744924.1|DR744924 RTCU1_25_G06.g1_A029 Roots plus adde... 44 0.007
gb|CV034162.1|CV034162 RTNACL1_39_C12.b1_A029 Roots plus ad... 42 0.030
gb|DR081623.1|DR081623 RTFEPL1_31_B03.b1_A029 Roots plus ad... 42 0.030
gb|DT626805.1|DT626805 EST1159881 Sequencing ESTs from lobl... 40 0.12
gb|CX649716.1|CX649716 COLD1_41_C01.b1_A029 Root cold Pinus... 38 0.46
gb|CX649795.1|CX649795 COLD1_41_C01.g1_A029 Root cold Pinus... 38 0.46
>gb|BX255434.1|BX255434 BX255434 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP005G04, mRNA sequence
Length = 668
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 145 gaaatggtggctgcattcgagaaggc 170
||||||||||||||||| ||||||||
Sbjct: 317 gaaatggtggctgcatttgagaaggc 342
>gb|BG275620.1|BG275620 NXSI_144_A03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_144_A03 5' similar to Arabidopsis thaliana
sequence At1g12780 uridine diphosphate glucose epimerase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 522
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 145 gaaatggtggctgcattcgagaaggc 170
||||||||||||||||| ||||||||
Sbjct: 322 gaaatggtggctgcatttgagaaggc 347
>gb|CF399227.1|CF399227 RTDS3_27_G09.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_27_G09_A022 3', mRNA sequence
Length = 644
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 145 gaaatggtggctgcattcgagaaggc 170
||||||||||||||||| ||||||||
Sbjct: 167 gaaatggtggctgcatttgagaaggc 192
>gb|CF669944.1|CF669944 RTCNT1_47_C05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_C05_A029 3', mRNA sequence
Length = 611
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 145 gaaatggtggctgcattcgagaaggc 170
||||||||||||||||| ||||||||
Sbjct: 135 gaaatggtggctgcatttgagaaggc 160
>gb|CF669954.1|CF669954 RTCNT1_47_D05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_D05_A029 3', mRNA sequence
Length = 673
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 145 gaaatggtggctgcattcgagaaggc 170
||||||||||||||||| ||||||||
Sbjct: 197 gaaatggtggctgcatttgagaaggc 222
>gb|BX678886.1|BX678886 BX678886 RS Pinus pinaster cDNA clone RS16E09, mRNA sequence
Length = 661
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 145 gaaatggtggctgcattcgagaaggc 170
||||||||||||||||| ||||||||
Sbjct: 480 gaaatggtggctgcatttgagaaggc 505
>gb|CX648482.1|CX648482 COLD1_29_A03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_29_A03_A029 3', mRNA sequence
Length = 666
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 145 gaaatggtggctgcattcgagaaggc 170
||||||||||||||||| ||||||||
Sbjct: 190 gaaatggtggctgcatttgagaaggc 215
>gb|DR094115.1|DR094115 STRR1_12_C04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_C04_A033 5', mRNA sequence
Length = 847
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 145 gaaatggtggctgcattcgagaaggc 170
||||||||||||||||| ||||||||
Sbjct: 489 gaaatggtggctgcatttgagaaggc 514
>gb|DR177347.1|DR177347 RTMNUT1_4_F09.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_4_F09_A029 5', mRNA sequence
Length = 746
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 145 gaaatggtggctgcattcgagaaggc 170
||||||||||||||||| ||||||||
Sbjct: 406 gaaatggtggctgcatttgagaaggc 381
>gb|DR178249.1|DR178249 RTMNUT1_10_G12.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_10_G12_A029 3', mRNA sequence
Length = 777
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 145 gaaatggtggctgcattcgagaaggc 170
||||||||||||||||| ||||||||
Sbjct: 309 gaaatggtggctgcatttgagaaggc 334
>gb|DR744847.1|DR744847 RTCU1_25_G06.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_25_G06_A029 3', mRNA sequence
Length = 591
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 145 gaaatggtggctgcattcgagaaggc 170
||||||||||||||||| ||||||||
Sbjct: 143 gaaatggtggctgcatttgagaaggc 168
>gb|DR744924.1|DR744924 RTCU1_25_G06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_25_G06_A029 5', mRNA sequence
Length = 691
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 145 gaaatggtggctgcattcgagaaggc 170
||||||||||||||||| ||||||||
Sbjct: 575 gaaatggtggctgcatttgagaaggc 600
>gb|CV034162.1|CV034162 RTNACL1_39_C12.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_39_C12_A029 3', mRNA sequence
Length = 720
Score = 42.1 bits (21), Expect = 0.030
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 145 gaaatggtggctgcattcgagaaggcttctgggaagaaaat 185
||||||||||||||||| || ||||| || ||||| |||||
Sbjct: 185 gaaatggtggctgcatttgaaaaggcctcagggaaaaaaat 225
>gb|DR081623.1|DR081623 RTFEPL1_31_B03.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_31_B03_A029 3', mRNA sequence
Length = 689
Score = 42.1 bits (21), Expect = 0.030
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 145 gaaatggtggctgcattcgagaaggcttctgggaagaaaat 185
||||||||||||||||| || ||||| || ||||| |||||
Sbjct: 84 gaaatggtggctgcatttgaaaaggcctcagggaaaaaaat 124
>gb|DT626805.1|DT626805 EST1159881 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAR51 5' end, mRNA sequence
Length = 942
Score = 40.1 bits (20), Expect = 0.12
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 145 gaaatggtggctgcattcgagaag 168
||||||||||||||||| ||||||
Sbjct: 907 gaaatggtggctgcatttgagaag 930
>gb|CX649716.1|CX649716 COLD1_41_C01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_41_C01_A029 3', mRNA sequence
Length = 665
Score = 38.2 bits (19), Expect = 0.46
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 145 gaaatggtggctgcattcgagaaggcttctgggaa 179
||||||||||||||||| || ||||| || |||||
Sbjct: 556 gaaatggtggctgcatttgaaaaggcctcagggaa 522
>gb|CX649795.1|CX649795 COLD1_41_C01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_41_C01_A029 5', mRNA sequence
Length = 634
Score = 38.2 bits (19), Expect = 0.46
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 145 gaaatggtggctgcattcgagaaggcttctgggaa 179
||||||||||||||||| || ||||| || |||||
Sbjct: 528 gaaatggtggctgcatttgaaaaggcctcagggaa 494
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 68,819
Number of Sequences: 355925
Number of extensions: 68819
Number of successful extensions: 18645
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18628
Number of HSP's gapped (non-prelim): 17
length of query: 691
length of database: 217,277,237
effective HSP length: 19
effective length of query: 672
effective length of database: 210,514,662
effective search space: 141465852864
effective search space used: 141465852864
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)