BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 44956.2.1
(1252 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO366379.1|CO366379 RTK1_27_B10.g1_A029 Roots minus pota... 135 5e-030
gb|DR110341.1|DR110341 RTS1_10_G10.b1_A029 Roots minus sulf... 135 5e-030
gb|DR110432.1|DR110432 RTS1_10_G10.g1_A029 Roots minus sulf... 135 5e-030
gb|CO366298.1|CO366298 RTK1_27_B10.b1_A029 Roots minus pota... 129 3e-028
gb|CX646481.1|CX646481 COLD1_9_D05.g1_A029 Root cold Pinus ... 129 3e-028
gb|CX648630.1|CX648630 COLD1_29_H09.g1_A029 Root cold Pinus... 129 3e-028
gb|DR387160.1|DR387160 RTHG1_19_H02.g1_A029 Roots plus adde... 129 3e-028
gb|DT638793.1|DT638793 EST1153724 Normalized pine embryo li... 129 3e-028
gb|DR691467.1|DR691467 EST1081554 Normalized pine embryo li... 123 2e-026
gb|DR164431.1|DR164431 RTFE1_48_H05.g1_A029 Roots minus iro... 121 7e-026
gb|DR387088.1|DR387088 RTHG1_19_H02.b1_A029 Roots plus adde... 121 7e-026
gb|BX678759.1|BX678759 BX678759 RS Pinus pinaster cDNA clon... 119 3e-025
gb|DR056578.1|DR056578 RTCA1_31_E11.b1_A029 Roots minus cal... 115 5e-024
gb|DR068729.1|DR068729 RTDK1_2_C05.g1_A029 Roots, dark Pinu... 105 4e-021
gb|DR089313.1|DR089313 RTAL1_7_H09.g1_A029 Roots plus added... 100 3e-019
gb|DR386680.1|DR386680 RTHG1_16_F06.g1_A029 Roots plus adde... 84 2e-014
gb|DR690147.1|DR690147 EST1080233 Normalized pine embryo li... 84 2e-014
gb|BE123745.1|BE123745 NXNV_153_F02_F Nsf Xylem Normal wood... 78 1e-012
gb|CR392753.1|CR392753 CR392753 RN Pinus pinaster cDNA clon... 74 2e-011
gb|BQ699985.1|BQ699985 NXRV132_F03_F NXRV (Nsf Xylem Root w... 72 6e-011
gb|DT636058.1|DT636058 EST1150989 Normalized pine embryo li... 70 2e-010
gb|BG317846.1|BG317846 NXPV_006_D03_F NXPV (Nsf Xylem Plani... 52 6e-005
gb|BG319389.1|BG319389 NXPV_027_D01_F NXPV (Nsf Xylem Plani... 52 6e-005
gb|BI397935.1|BI397935 NXPV_112_D03_F NXPV (Nsf Xylem Plani... 52 6e-005
gb|BQ696933.1|BQ696933 NXPV_047_A08_F NXPV (Nsf Xylem Plani... 52 6e-005
gb|CD023139.1|CD023139 NXPV_100_G03_F NXPV (Nsf Xylem Plani... 52 6e-005
gb|CF664018.1|CF664018 RTCNT1_6_F07.g1_A029 Root control Pi... 52 6e-005
gb|CX646399.1|CX646399 COLD1_9_D05.b1_A029 Root cold Pinus ... 52 6e-005
gb|DR164347.1|DR164347 RTFE1_48_H05.b1_A029 Roots minus iro... 52 6e-005
gb|DR386596.1|DR386596 RTHG1_16_F06.b1_A029 Roots plus adde... 52 6e-005
gb|CD025117.1|CD025117 NXSI_009_F04_F NXSI (Nsf Xylem Side ... 48 9e-004
gb|DR068649.1|DR068649 RTDK1_2_C05.b1_A029 Roots, dark Pinu... 42 0.054
gb|BQ290504.1|BQ290504 NXRV045_B02_F NXRV (Nsf Xylem Root w... 40 0.21
gb|BQ698789.1|BQ698789 NXNV_063_H02_F Nsf Xylem Normal wood... 40 0.21
gb|DR694408.1|DR694408 EST1084500 Normalized pine embryo li... 40 0.21
>gb|CO366379.1|CO366379 RTK1_27_B10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_B10_A029 5', mRNA sequence
Length = 852
Score = 135 bits (68), Expect = 5e-030
Identities = 338/428 (78%)
Strand = Plus / Plus
Query: 262 ttaagggccaggaactcgaccaaccctgcaacttcctctggttggccatatctccctaac 321
||||| |||| |||||| ||||| |||||||||||||| ||||| ||||| || || |
Sbjct: 244 ttaagagccaagaactccaccaaacctgcaacttcctccggttgtccatacctacccaga 303
Query: 322 ggaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcatatcagat 381
|| ||||| | ||||||||||||| || || ||||||| |||||||| || ||
Sbjct: 304 ggtatggtctggagaattttcttctcaatttcatcaccaagttttgcagtcatgtctgaa 363
Query: 382 gcaatgaaccctggtgcaatagcattcacattgatatttctgcttgcatactccctggca 441
||||| || || || || || ||||| | |||||||||| | ||||| ||||| |||
Sbjct: 364 gcaataaatccaggagctatggcattggctgtgatatttctagtggcatattcccttgca 423
Query: 442 actgtttttgtgaaaccaatcactccagccttggctgcgctataattagcttggccaaca 501
|| || || || | ||||| ||||| || |||||||| || ||||||||||| || | |
Sbjct: 424 acagtcttagtcagcccaataactcctgctttggctgcactgtaattagcttgccctata 483
Query: 502 ttgccagtaagaccaactacagatgcaatgttgataatttttccctttctctttttcatc 561
|||||||| | |||||| ||||| || || ||||| | | ||||||| ||||| ||||||
Sbjct: 484 ttgccagtcaaaccaaccacagaagctatattgatgactcttcccttcctcttcttcatc 543
Query: 562 attacttttgttgcagcctgtgtacaaaggaagacaccagtaagattcagatcaattacg 621
|| ||||| | ||| |||||||||||||| || |||||||| ||||||| ||||| ||
Sbjct: 544 ataactttagctgctgcctgtgtacaaagaaatacaccagtgagattcaagtcaatgaca 603
Query: 622 tcttgccactgagatttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcatta 681
|| |||||||||||||| |||| ||||||| | |||||| |||||| ||||||||
Sbjct: 604 tcctgccactgagattttgtcattctcatcattagtgtgtcctttgtaatacctgcattg 663
Query: 682 tttaccag 689
||||||||
Sbjct: 664 tttaccag 671
Score = 40.1 bits (20), Expect = 0.21
Identities = 68/84 (80%)
Strand = Plus / Plus
Query: 784 ccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatag 843
||||||| |||||||||| | | || || ||||||||||| || ||||||||||||
Sbjct: 766 ccaccagcagcttcaatctgtctagaaacatcttcagcctcctttatcgaccgggcatag 825
Query: 844 tttaccagaaccttgcatcctgct 867
|| || |||||||| || ||||||
Sbjct: 826 ttcacaagaaccttacagcctgct 849
>gb|DR110341.1|DR110341 RTS1_10_G10.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_10_G10_A029 3', mRNA sequence
Length = 745
Score = 135 bits (68), Expect = 5e-030
Identities = 338/428 (78%)
Strand = Plus / Minus
Query: 262 ttaagggccaggaactcgaccaaccctgcaacttcctctggttggccatatctccctaac 321
||||| |||| |||||| ||||| |||||||||||||| ||||| ||||| || || |
Sbjct: 508 ttaagagccaagaactccaccaaacctgcaacttcctccggttgtccatacctacccaga 449
Query: 322 ggaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcatatcagat 381
|| ||||| | ||||||||||||| || || ||||||| |||||||| || ||
Sbjct: 448 ggtatggtctggagaattttcttctcaatttcatcaccaagttttgcagtcatgtctgaa 389
Query: 382 gcaatgaaccctggtgcaatagcattcacattgatatttctgcttgcatactccctggca 441
||||| || || || || || ||||| | |||||||||| | ||||| ||||| |||
Sbjct: 388 gcaataaatccaggagctatggcattggctgtgatatttctagtggcatattcccttgca 329
Query: 442 actgtttttgtgaaaccaatcactccagccttggctgcgctataattagcttggccaaca 501
|| || || || | ||||| ||||| || |||||||| || ||||||||||| || | |
Sbjct: 328 acagtcttagtcagcccaataactcctgctttggctgcactgtaattagcttgccctata 269
Query: 502 ttgccagtaagaccaactacagatgcaatgttgataatttttccctttctctttttcatc 561
|||||||| | |||||| ||||| || || ||||| | | ||||||| ||||| ||||||
Sbjct: 268 ttgccagtcaaaccaaccacagaagctatattgatgactcttcccttcctcttcttcatc 209
Query: 562 attacttttgttgcagcctgtgtacaaaggaagacaccagtaagattcagatcaattacg 621
|| ||||| | ||| |||||||||||||| || |||||||| ||||||| ||||| ||
Sbjct: 208 ataactttagctgctgcctgtgtacaaagaaatacaccagtgagattcaagtcaatgaca 149
Query: 622 tcttgccactgagatttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcatta 681
|| |||||||||||||| |||| ||||||| | |||||| |||||| ||||||||
Sbjct: 148 tcctgccactgagattttgtcattctcatcattagtgtgtcctttgtaatacctgcattg 89
Query: 682 tttaccag 689
||||||||
Sbjct: 88 tttaccag 81
>gb|DR110432.1|DR110432 RTS1_10_G10.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_10_G10_A029 5', mRNA sequence
Length = 812
Score = 135 bits (68), Expect = 5e-030
Identities = 338/428 (78%)
Strand = Plus / Minus
Query: 262 ttaagggccaggaactcgaccaaccctgcaacttcctctggttggccatatctccctaac 321
||||| |||| |||||| ||||| |||||||||||||| ||||| ||||| || || |
Sbjct: 720 ttaagagccaagaactccaccaaacctgcaacttcctccggttgtccatacctacccaga 661
Query: 322 ggaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcatatcagat 381
|| ||||| | ||||||||||||| || || ||||||| |||||||| || ||
Sbjct: 660 ggtatggtctggagaattttcttctcaatttcatcaccaagttttgcagtcatgtctgaa 601
Query: 382 gcaatgaaccctggtgcaatagcattcacattgatatttctgcttgcatactccctggca 441
||||| || || || || || ||||| | |||||||||| | ||||| ||||| |||
Sbjct: 600 gcaataaatccaggagctatggcattggctgtgatatttctagtggcatattcccttgca 541
Query: 442 actgtttttgtgaaaccaatcactccagccttggctgcgctataattagcttggccaaca 501
|| || || || | ||||| ||||| || |||||||| || ||||||||||| || | |
Sbjct: 540 acagtcttagtcagcccaataactcctgctttggctgcactgtaattagcttgccctata 481
Query: 502 ttgccagtaagaccaactacagatgcaatgttgataatttttccctttctctttttcatc 561
|||||||| | |||||| ||||| || || ||||| | | ||||||| ||||| ||||||
Sbjct: 480 ttgccagtcaaaccaaccacagaagctatattgatgactcttcccttcctcttcttcatc 421
Query: 562 attacttttgttgcagcctgtgtacaaaggaagacaccagtaagattcagatcaattacg 621
|| ||||| | ||| |||||||||||||| || |||||||| ||||||| ||||| ||
Sbjct: 420 ataactttagctgctgcctgtgtacaaagaaatacaccagtgagattcaagtcaatgaca 361
Query: 622 tcttgccactgagatttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcatta 681
|| |||||||||||||| |||| ||||||| | |||||| |||||| ||||||||
Sbjct: 360 tcctgccactgagattttgtcattctcatcattagtgtgtcctttgtaatacctgcattg 301
Query: 682 tttaccag 689
||||||||
Sbjct: 300 tttaccag 293
Score = 40.1 bits (20), Expect = 0.21
Identities = 68/84 (80%)
Strand = Plus / Minus
Query: 784 ccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatag 843
||||||| |||||||||| | | || || ||||||||||| || ||||||||||||
Sbjct: 198 ccaccagcagcttcaatctgtctagaaacatcttcagcctcctttatcgaccgggcatag 139
Query: 844 tttaccagaaccttgcatcctgct 867
|| || |||||||| || ||||||
Sbjct: 138 ttcacaagaaccttacagcctgct 115
>gb|CO366298.1|CO366298 RTK1_27_B10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_B10_A029 3', mRNA sequence
Length = 868
Score = 129 bits (65), Expect = 3e-028
Identities = 191/233 (81%)
Strand = Plus / Plus
Query: 457 ccaatcactccagccttggctgcgctataattagcttggccaacattgccagtaagacca 516
||||| ||||| || |||||||| || ||||||||||| || | ||||||||| | ||||
Sbjct: 103 ccaataactcctgctttggctgcactgtaattagcttgccctatattgccagtcaaacca 162
Query: 517 actacagatgcaatgttgataatttttccctttctctttttcatcattacttttgttgca 576
|| ||||| || || ||||| | | ||||||| ||||| |||||||| ||||| | |||
Sbjct: 163 accacagaagctatattgatgactcttcccttcctcttcttcatcataactttagctgct 222
Query: 577 gcctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagat 636
|||||||||||||| || |||||||| ||||||| ||||| || || ||||||||||||
Sbjct: 223 gcctgtgtacaaagaaatacaccagtgagattcaagtcaatgacatcctgccactgagat 282
Query: 637 ttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcattatttaccag 689
|| |||| ||||||| | |||||| |||||| |||||||| ||||||||
Sbjct: 283 tttgtcattctcatcattagtgtgtcctttgtaatacctgcattgtttaccag 335
Score = 40.1 bits (20), Expect = 0.21
Identities = 68/84 (80%)
Strand = Plus / Plus
Query: 784 ccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatag 843
||||||| |||||||||| | | || || ||||||||||| || ||||||||||||
Sbjct: 430 ccaccagcagcttcaatctgtctagaaacatcttcagcctcctttatcgaccgggcatag 489
Query: 844 tttaccagaaccttgcatcctgct 867
|| || |||||||| || ||||||
Sbjct: 490 ttcacaagaaccttacagcctgct 513
>gb|CX646481.1|CX646481 COLD1_9_D05.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_9_D05_A029 5', mRNA sequence
Length = 876
Score = 129 bits (65), Expect = 3e-028
Identities = 191/233 (81%)
Strand = Plus / Minus
Query: 457 ccaatcactccagccttggctgcgctataattagcttggccaacattgccagtaagacca 516
||||| ||||| || |||||||| || ||||||||||| || | ||||||||| | ||||
Sbjct: 772 ccaataactcctgctttggctgcactgtaattagcttgccctatattgccagtcaaacca 713
Query: 517 actacagatgcaatgttgataatttttccctttctctttttcatcattacttttgttgca 576
|| ||||| || || ||||| | | ||||||| ||||| |||||||| ||||| | |||
Sbjct: 712 accacagaagctatattgatgactcttcccttcctcttcttcatcataactttagctgct 653
Query: 577 gcctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagat 636
|||||||||||||| || |||||||| ||||||| ||||| || || ||||||||||||
Sbjct: 652 gcctgtgtacaaagaaatacaccagtgagattcaagtcaatgacatcctgccactgagat 593
Query: 637 ttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcattatttaccag 689
|| |||| ||||||| | |||||| |||||| |||||||| ||||||||
Sbjct: 592 tttgtcattctcatcattagtgtgtcctttgtaatacctgcattgtttaccag 540
Score = 40.1 bits (20), Expect = 0.21
Identities = 68/84 (80%)
Strand = Plus / Minus
Query: 784 ccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatag 843
||||||| |||||||||| | | || || ||||||||||| || ||||||||||||
Sbjct: 445 ccaccagcagcttcaatctgtctagaaacatcttcagcctcctttatcgaccgggcatag 386
Query: 844 tttaccagaaccttgcatcctgct 867
|| || |||||||| || ||||||
Sbjct: 385 ttcacaagaaccttacagcctgct 362
>gb|CX648630.1|CX648630 COLD1_29_H09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_29_H09_A029 5', mRNA sequence
Length = 714
Score = 129 bits (65), Expect = 3e-028
Identities = 191/233 (81%)
Strand = Plus / Minus
Query: 457 ccaatcactccagccttggctgcgctataattagcttggccaacattgccagtaagacca 516
||||| ||||| || |||||||| || ||||||||||| || | ||||||||| | ||||
Sbjct: 615 ccaataactcctgctttggctgcactgtaattagcttgccctatattgccagtcaaacca 556
Query: 517 actacagatgcaatgttgataatttttccctttctctttttcatcattacttttgttgca 576
|| ||||| || || ||||| | | ||||||| ||||| |||||||| ||||| | |||
Sbjct: 555 accacagaagctatattgatgactcttcccttcctcttcttcatcataactttagctgct 496
Query: 577 gcctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagat 636
|||||||||||||| || |||||||| ||||||| ||||| || || ||||||||||||
Sbjct: 495 gcctgtgtacaaagaaatacaccagtgagattcaagtcaatgacatcctgccactgagat 436
Query: 637 ttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcattatttaccag 689
|| |||| ||||||| | |||||| |||||| |||||||| ||||||||
Sbjct: 435 tttgtcattctcatcattagtgtgtcctttgtaatacctgcattgtttaccag 383
Score = 40.1 bits (20), Expect = 0.21
Identities = 68/84 (80%)
Strand = Plus / Minus
Query: 784 ccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatag 843
||||||| |||||||||| | | || || ||||||||||| || ||||||||||||
Sbjct: 288 ccaccagcagcttcaatctgtctagaaacatcttcagcctcctttatcgaccgggcatag 229
Query: 844 tttaccagaaccttgcatcctgct 867
|| || |||||||| || ||||||
Sbjct: 228 ttcacaagaaccttacagcctgct 205
>gb|DR387160.1|DR387160 RTHG1_19_H02.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_19_H02_A029 5', mRNA sequence
Length = 817
Score = 129 bits (65), Expect = 3e-028
Identities = 191/233 (81%)
Strand = Plus / Minus
Query: 457 ccaatcactccagccttggctgcgctataattagcttggccaacattgccagtaagacca 516
||||| ||||| || |||||||| || ||||||||||| || | ||||||||| | ||||
Sbjct: 741 ccaataactcctgctttggctgcactgtaattagcttgccctatattgccagtcaaacca 682
Query: 517 actacagatgcaatgttgataatttttccctttctctttttcatcattacttttgttgca 576
|| ||||| || || ||||| | | ||||||| ||||| |||||||| ||||| | |||
Sbjct: 681 accacagaagctatattgatgactcttcccttcctcttcttcatcataactttagctgct 622
Query: 577 gcctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagat 636
|||||||||||||| || |||||||| ||||||| ||||| || || ||||||||||||
Sbjct: 621 gcctgtgtacaaagaaatacaccagtgagattcaagtcaatgacatcctgccactgagat 562
Query: 637 ttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcattatttaccag 689
|| |||| ||||||| | |||||| |||||| |||||||| ||||||||
Sbjct: 561 tttgtcattctcatcattagtgtgtcctttgtaatacctgcattgtttaccag 509
Score = 40.1 bits (20), Expect = 0.21
Identities = 68/84 (80%)
Strand = Plus / Minus
Query: 784 ccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatag 843
||||||| |||||||||| | | || || ||||||||||| || ||||||||||||
Sbjct: 414 ccaccagcagcttcaatctgtctagaaacatcttcagcctcctttatcgaccgggcatag 355
Query: 844 tttaccagaaccttgcatcctgct 867
|| || |||||||| || ||||||
Sbjct: 354 ttcacaagaaccttacagcctgct 331
>gb|DT638793.1|DT638793 EST1153724 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHJ54 3' end, mRNA sequence
Length = 874
Score = 129 bits (65), Expect = 3e-028
Identities = 191/233 (81%)
Strand = Plus / Minus
Query: 457 ccaatcactccagccttggctgcgctataattagcttggccaacattgccagtaagacca 516
||||| ||||| || |||||||| || ||||||||||| || | ||||||||| | ||||
Sbjct: 760 ccaataactcctgctttggctgcactgtaattagcttgccctatattgccagtcaaacca 701
Query: 517 actacagatgcaatgttgataatttttccctttctctttttcatcattacttttgttgca 576
|| ||||| || || ||||| | | ||||||| ||||| |||||||| ||||| | |||
Sbjct: 700 accacagaagctatattgatgactcttcccttcctcttcttcatcataactttagctgct 641
Query: 577 gcctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagat 636
|||||||||||||| || |||||||| ||||||| ||||| || || ||||||||||||
Sbjct: 640 gcctgtgtacaaagaaatacaccagtgagattcaagtcaatgacatcctgccactgagat 581
Query: 637 ttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcattatttaccag 689
|| |||| ||||||| | |||||| |||||| |||||||| ||||||||
Sbjct: 580 tttgtcattctcatcattagtgtgtcctttgtaatacctgcattgtttaccag 528
Score = 40.1 bits (20), Expect = 0.21
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 832 gaccgggcatagtttaccagaaccttgcatcctgct 867
|||||||||||||| || |||||||| || ||||||
Sbjct: 385 gaccgggcatagttcacaagaaccttacagcctgct 350
>gb|DR691467.1|DR691467 EST1081554 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD876 3' end, mRNA sequence
Length = 854
Score = 123 bits (62), Expect = 2e-026
Identities = 179/218 (82%)
Strand = Plus / Minus
Query: 472 ttggctgcgctataattagcttggccaacattgccagtaagaccaactacagatgcaatg 531
|||||||| || ||||||||||| || | ||||||||| | |||||| ||||| || ||
Sbjct: 822 ttggctgcactgtaattagcttgccctatattgccagtcaaaccaaccacagaagctata 763
Query: 532 ttgataatttttccctttctctttttcatcattacttttgttgcagcctgtgtacaaagg 591
||||| | | ||||||| ||||| |||||||| ||||| | ||| ||||||||||||||
Sbjct: 762 ttgatgactcttcccttcctcttcttcatcataactttagctgctgcctgtgtacaaaga 703
Query: 592 aagacaccagtaagattcagatcaattacgtcttgccactgagatttcttcatcctcatc 651
|| |||||||| ||||||| ||||| || || |||||||||||||| |||| ||||||
Sbjct: 702 aatacaccagtgagattcaagtcaatgacatcctgccactgagattttgtcattctcatc 643
Query: 652 aacaatgtgtctcgtgtaatccctgcattatttaccag 689
| | |||||| |||||| |||||||| ||||||||
Sbjct: 642 attagtgtgtcctttgtaatacctgcattgtttaccag 605
Score = 40.1 bits (20), Expect = 0.21
Identities = 68/84 (80%)
Strand = Plus / Minus
Query: 784 ccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatag 843
||||||| |||||||||| | | || || ||||||||||| || ||||||||||||
Sbjct: 510 ccaccagcagcttcaatctgtctagaaacatcttcagcctcctttatcgaccgggcatag 451
Query: 844 tttaccagaaccttgcatcctgct 867
|| || |||||||| || ||||||
Sbjct: 450 ttcacaagaaccttacagcctgct 427
>gb|DR164431.1|DR164431 RTFE1_48_H05.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_48_H05_A029 5', mRNA sequence
Length = 852
Score = 121 bits (61), Expect = 7e-026
Identities = 190/233 (81%)
Strand = Plus / Minus
Query: 457 ccaatcactccagccttggctgcgctataattagcttggccaacattgccagtaagacca 516
||||| ||||| || |||||||| || ||||||||||| || | ||||||||| | ||||
Sbjct: 742 ccaataactcctgctttggctgcactgtaattagcttgccctatattgccagtcaaacca 683
Query: 517 actacagatgcaatgttgataatttttccctttctctttttcatcattacttttgttgca 576
|| ||||| || || ||||| | | ||||||| ||||| |||||||| ||||| | |||
Sbjct: 682 accacagaagctatattgatgactcttcccttcctcttcttcatcataactttagctgct 623
Query: 577 gcctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagat 636
|||||||||||||| || |||||||| ||||||| ||||| || || ||||||||| ||
Sbjct: 622 gcctgtgtacaaagaaatacaccagtgagattcaagtcaatgacatcctgccactgaaat 563
Query: 637 ttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcattatttaccag 689
|| |||| ||||||| | |||||| |||||| |||||||| ||||||||
Sbjct: 562 tttgtcattctcatcattagtgtgtcctttgtaatacctgcattgtttaccag 510
Score = 40.1 bits (20), Expect = 0.21
Identities = 68/84 (80%)
Strand = Plus / Minus
Query: 784 ccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatag 843
||||||| |||||||||| | | || || ||||||||||| || ||||||||||||
Sbjct: 415 ccaccagcagcttcaatctgtctagaaacatcttcagcctcctttatcgaccgggcatag 356
Query: 844 tttaccagaaccttgcatcctgct 867
|| || |||||||| || ||||||
Sbjct: 355 ttcacaagaaccttacagcctgct 332
>gb|DR387088.1|DR387088 RTHG1_19_H02.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_19_H02_A029 3', mRNA sequence
Length = 862
Score = 121 bits (61), Expect = 7e-026
Identities = 298/377 (79%)
Strand = Plus / Minus
Query: 262 ttaagggccaggaactcgaccaaccctgcaacttcctctggttggccatatctccctaac 321
||||| |||| |||||| ||||| |||||||||||||| ||||| ||||| || || |
Sbjct: 389 ttaagagccaagaactccaccaaacctgcaacttcctccggttgtccatacctacccaga 330
Query: 322 ggaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcatatcagat 381
|| ||||| | ||||||||||||| || || ||||||| |||||||| || ||
Sbjct: 329 ggtatggtctggagaattttcttctcaatttcatcaccaagttttgcagtcatgtctgaa 270
Query: 382 gcaatgaaccctggtgcaatagcattcacattgatatttctgcttgcatactccctggca 441
||||| || || || || || ||||| | |||||||||| | ||||| ||||| |||
Sbjct: 269 gcaataaatccaggagctatggcattggctgtgatatttctagtggcatattcccttgca 210
Query: 442 actgtttttgtgaaaccaatcactccagccttggctgcgctataattagcttggccaaca 501
|| || || || | ||||| ||||| || |||||||| || ||||||||||| || | |
Sbjct: 209 acagtcttagtcagcccaataactcctgctttggctgcactgtaattagcttgccctata 150
Query: 502 ttgccagtaagaccaactacagatgcaatgttgataatttttccctttctctttttcatc 561
|||||||| | |||||| ||||| || || ||||| | | ||||||| ||||| ||||||
Sbjct: 149 ttgccagtcaaaccaaccacagaagctatattgatgactcttcccttcctcttcttcatc 90
Query: 562 attacttttgttgcagcctgtgtacaaaggaagacaccagtaagattcagatcaattacg 621
|| ||||| | ||| |||||||||||||| || |||||||| ||||||| ||||| ||
Sbjct: 89 ataactttagctgctgcctgtgtacaaagaaatacaccagtgagattcaagtcaatgaca 30
Query: 622 tcttgccactgagattt 638
|| ||||||||||||||
Sbjct: 29 tcctgccactgagattt 13
>gb|BX678759.1|BX678759 BX678759 RS Pinus pinaster cDNA clone RS14G05, mRNA sequence
Length = 395
Score = 119 bits (60), Expect = 3e-025
Identities = 189/232 (81%)
Strand = Plus / Minus
Query: 457 ccaatcactccagccttggctgcgctataattagcttggccaacattgccagtaagacca 516
||||| ||||| || ||| |||| || ||||||||||| || | ||||||||| | ||||
Sbjct: 325 ccaataactcctgctttgactgcactgtaattagcttgccctatattgccagtcaaacca 266
Query: 517 actacagatgcaatgttgataatttttccctttctctttttcatcattacttttgttgca 576
|| ||||| || || ||||| | | ||||||| ||||| |||||||| ||||| | |||
Sbjct: 265 accacagaagctatattgatgactcttcccttcctcttcttcatcataactttagctgct 206
Query: 577 gcctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagat 636
|||||||||||||| | |||||||| ||||||| ||||| || || ||||||||||||
Sbjct: 205 gcctgtgtacaaagagatacaccagtgagattcaagtcaatgacatcctgccactgagat 146
Query: 637 ttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcattatttacca 688
|| |||| ||||||| | |||||| | |||||| |||||||| |||||||
Sbjct: 145 tttgtcattctcatcattagtgtgtcccttgtaatacctgcattgtttacca 94
>gb|DR056578.1|DR056578 RTCA1_31_E11.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_31_E11_A029 3', mRNA sequence
Length = 615
Score = 115 bits (58), Expect = 5e-024
Identities = 169/206 (82%)
Strand = Plus / Plus
Query: 484 taattagcttggccaacattgccagtaagaccaactacagatgcaatgttgataattttt 543
||||||||||| || | ||||||||| | |||||| ||||| || || ||||| | | ||
Sbjct: 9 taattagcttgccctatattgccagtcaaaccaaccacagaagctatattgatgactctt 68
Query: 544 ccctttctctttttcatcattacttttgttgcagcctgtgtacaaaggaagacaccagta 603
||||| ||||| |||||||| ||||| | ||| |||||||||||||| || ||||||||
Sbjct: 69 cccttcctcttcttcatcataactttagctgctgcctgtgtacaaagaaatacaccagtg 128
Query: 604 agattcagatcaattacgtcttgccactgagatttcttcatcctcatcaacaatgtgtct 663
||||||| ||||| || || |||||||||||||| |||| ||||||| | ||||||
Sbjct: 129 agattcaagtcaatgacatcctgccactgagattttgtcattctcatcattagtgtgtcc 188
Query: 664 cgtgtaatccctgcattatttaccag 689
|||||| |||||||| ||||||||
Sbjct: 189 tttgtaatacctgcattgtttaccag 214
Score = 40.1 bits (20), Expect = 0.21
Identities = 68/84 (80%)
Strand = Plus / Plus
Query: 784 ccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatag 843
||||||| |||||||||| | | || || ||||||||||| || ||||||||||||
Sbjct: 309 ccaccagcagcttcaatctgtctagaaacatcttcagcctcctttatcgaccgggcatag 368
Query: 844 tttaccagaaccttgcatcctgct 867
|| || |||||||| || ||||||
Sbjct: 369 ttcacaagaaccttacagcctgct 392
>gb|DR068729.1|DR068729 RTDK1_2_C05.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_2_C05_A029 5', mRNA sequence
Length = 778
Score = 105 bits (53), Expect = 4e-021
Identities = 275/349 (78%)
Strand = Plus / Plus
Query: 262 ttaagggccaggaactcgaccaaccctgcaacttcctctggttggccatatctccctaac 321
||||| |||| |||||| ||||| |||||||||||||| ||||| ||||| || || |
Sbjct: 413 ttaagagccaagaactccaccaaacctgcaacttcctccggttgtccatacctacccaga 472
Query: 322 ggaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcatatcagat 381
|| ||||| | ||||||||||||| || || ||||||| |||||||| || ||
Sbjct: 473 ggtatggtctggagaattttcttctcaatttcatcaccaagttttgcagtcatgtctgaa 532
Query: 382 gcaatgaaccctggtgcaatagcattcacattgatatttctgcttgcatactccctggca 441
||||| || || || || || ||||| | |||||||||| | ||||| ||||| |||
Sbjct: 533 gcaataaatccaggagctatggcattggctgtgatatttctagtggcatattcccttgca 592
Query: 442 actgtttttgtgaaaccaatcactccagccttggctgcgctataattagcttggccaaca 501
|| || || || | ||||| ||||| || |||||||| || ||||||||||| || | |
Sbjct: 593 acagtcttagtcagcccaataactcctgctttggctgcactgtaattagcttgccctata 652
Query: 502 ttgccagtaagaccaactacagatgcaatgttgataatttttccctttctctttttcatc 561
|||||||| | |||||| ||||| || || ||||| | | ||||||| ||||| ||||||
Sbjct: 653 ttgccagtcaaaccaaccacagaagctatattgatgactcttcccttcctcttcttcatc 712
Query: 562 attacttttgttgcagcctgtgtacaaaggaagacaccagtaagattca 610
|| ||||| | ||| |||||||||||||| || |||||||| |||||||
Sbjct: 713 ataactttagctgctgcctgtgtacaaagaaatacaccagtgagattca 761
>gb|DR089313.1|DR089313 RTAL1_7_H09.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_7_H09_A029 5', mRNA sequence
Length = 511
Score = 99.6 bits (50), Expect = 3e-019
Identities = 266/338 (78%)
Strand = Plus / Minus
Query: 273 gaactcgaccaaccctgcaacttcctctggttggccatatctccctaacggaatggttga 332
|||||| ||||| |||||||||||||| ||||| ||||| || || | || |||||
Sbjct: 350 gaactccaccaaacctgcaacttcctccggttgtccatacctacccagaggtatggtctg 291
Query: 333 caagattttcttctcaagctcttctccaagttcggcagtcatatcagatgcaatgaaccc 392
| ||||||||||||| || || ||||||| |||||||| || || ||||| || ||
Sbjct: 290 gagaattttcttctcaatttcatcaccaagttttgcagtcatgtctgaagcaataaatcc 231
Query: 393 tggtgcaatagcattcacattgatatttctgcttgcatactccctggcaactgtttttgt 452
|| || || ||||| | |||||||||| | ||||| ||||| ||||| || || ||
Sbjct: 230 aggagctatggcattggctgtgatatttctagtggcatattcccttgcaacagtcttagt 171
Query: 453 gaaaccaatcactccagccttggctgcgctataattagcttggccaacattgccagtaag 512
| ||||| ||||| || |||||||| || ||||||||||| || | ||||||||| |
Sbjct: 170 cagcccaataactcctgctttggctgcactgtaattagcttgccctatattgccagtcaa 111
Query: 513 accaactacagatgcaatgttgataatttttccctttctctttttcatcattacttttgt 572
|||||| ||||| || || ||||| | | ||||||| ||||| |||||||| ||||| |
Sbjct: 110 accaaccacagaagctatattgatgactcttcccttcctcttcttcatcataactttcgc 51
Query: 573 tgcagcctgtgtacaaaggaagacaccagtaagattca 610
||| |||||||||||||| || |||||||| |||||||
Sbjct: 50 tgctgcctgtgtacaaagaaatacaccagtgagattca 13
>gb|DR386680.1|DR386680 RTHG1_16_F06.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_16_F06_A029 5', mRNA sequence
Length = 672
Score = 83.8 bits (42), Expect = 2e-014
Identities = 111/134 (82%)
Strand = Plus / Minus
Query: 556 ttcatcattacttttgttgcagcctgtgtacaaaggaagacaccagtaagattcagatca 615
|||||||| ||||| | ||| |||||||||||||| || |||||||| ||||||| |||
Sbjct: 672 ttcatcataactttagctgctgcctgtgtacaaagaaatacaccagtgagattcaagtca 613
Query: 616 attacgtcttgccactgagatttcttcatcctcatcaacaatgtgtctcgtgtaatccct 675
|| || || |||||||||||||| |||| ||||||| | |||||| |||||| |||
Sbjct: 612 atgacatcctgccactgagattttgtcattctcatcattagtgtgtcctttgtaatacct 553
Query: 676 gcattatttaccag 689
||||| ||||||||
Sbjct: 552 gcattgtttaccag 539
Score = 40.1 bits (20), Expect = 0.21
Identities = 68/84 (80%)
Strand = Plus / Minus
Query: 784 ccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatag 843
||||||| |||||||||| | | || || ||||||||||| || ||||||||||||
Sbjct: 444 ccaccagcagcttcaatctgtctagaaacatcttcagcctcctttatcgaccgggcatag 385
Query: 844 tttaccagaaccttgcatcctgct 867
|| || |||||||| || ||||||
Sbjct: 384 ttcacaagaaccttacagcctgct 361
>gb|DR690147.1|DR690147 EST1080233 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACR63 3' end, mRNA sequence
Length = 777
Score = 83.8 bits (42), Expect = 2e-014
Identities = 111/134 (82%)
Strand = Plus / Minus
Query: 556 ttcatcattacttttgttgcagcctgtgtacaaaggaagacaccagtaagattcagatca 615
|||||||| ||||| | ||| |||||||||||||| || |||||||| ||||||| |||
Sbjct: 773 ttcatcataactttagctgctgcctgtgtacaaagaaatacaccagtgagattcaagtca 714
Query: 616 attacgtcttgccactgagatttcttcatcctcatcaacaatgtgtctcgtgtaatccct 675
|| || || |||||||||||||| |||| ||||||| | |||||| |||||| |||
Sbjct: 713 atgacatcctgccactgagattttgtcattctcatcattagtgtgtcctttgtaatacct 654
Query: 676 gcattatttaccag 689
||||| ||||||||
Sbjct: 653 gcattgtttaccag 640
Score = 40.1 bits (20), Expect = 0.21
Identities = 68/84 (80%)
Strand = Plus / Minus
Query: 784 ccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatag 843
||||||| |||||||||| | | || || ||||||||||| || ||||||||||||
Sbjct: 545 ccaccagcagcttcaatctgtctagaaacatcttcagcctcctttatcgaccgggcatag 486
Query: 844 tttaccagaaccttgcatcctgct 867
|| || |||||||| || ||||||
Sbjct: 485 ttcacaagaaccttacagcctgct 462
>gb|BE123745.1|BE123745 NXNV_153_F02_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_153_F02 5' similar to Arabidopsis thaliana
sequence At1g24360 putative 3-oxoacyl [acyl-carrier
protein] reductase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 212
Score = 77.8 bits (39), Expect = 1e-012
Identities = 108/131 (82%)
Strand = Plus / Minus
Query: 556 ttcatcattacttttgttgcagcctgtgtacaaaggaagacaccagtaagattcagatca 615
|||||||| ||||| | ||| |||||||||||||| || |||||||| ||||||| |||
Sbjct: 131 ttcatcataactttagctgctgcctgtgtacaaagaaatacaccagtgagattcaagtca 72
Query: 616 attacgtcttgccactgagatttcttcatcctcatcaacaatgtgtctcgtgtaatccct 675
|| || || |||||||||||||| |||| ||||||| | |||||| |||||| |||
Sbjct: 71 atgacatcctgccactgagattttgtcattctcatcattagtgtgtcctttgtaatacct 12
Query: 676 gcattatttac 686
||||| |||||
Sbjct: 11 gcattgtttac 1
>gb|CR392753.1|CR392753 CR392753 RN Pinus pinaster cDNA clone RN37F01, mRNA sequence
Length = 145
Score = 73.8 bits (37), Expect = 2e-011
Identities = 83/97 (85%), Gaps = 1/97 (1%)
Strand = Plus / Minus
Query: 542 ttccctttctctttttcatcattacttttgttgcagcctgtgtacaaaggaagacaccag 601
||||||| ||||| |||||||| ||||| | ||| |||||||||||||| || |||||||
Sbjct: 126 ttcccttcctcttcttcatcataactttagctgctgcctgtgtacaaagaaatacaccag 67
Query: 602 taagattcagatcaattacgtcttgccactgagattt 638
| ||||||| |||| ||| || ||||||||||||||
Sbjct: 66 tgagattcaagtcaa-tacatcctgccactgagattt 31
>gb|BQ699985.1|BQ699985 NXRV132_F03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV132_F03 5' similar to Arabidopsis thaliana
sequence At1g24360 putative 3-oxoacyl [acyl-carrier
protein] reductase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 215
Score = 71.9 bits (36), Expect = 6e-011
Identities = 109/134 (81%)
Strand = Plus / Minus
Query: 556 ttcatcattacttttgttgcagcctgtgtacaaaggaagacaccagtaagattcagatca 615
|||||||| ||||| | ||| |||||||||||||| || |||||||| ||||||| |||
Sbjct: 213 ttcatcataactttagctgctgcctgtgtacaaagaaatacaccagtgagattcaagtca 154
Query: 616 attacgtcttgccactgagatttcttcatcctcatcaacaatgtgtctcgtgtaatccct 675
|| || || ||||| ||||||| |||| ||||||| | |||||| |||||| |||
Sbjct: 153 atgacatcctgccanngagattttgtcattctcatcattagtgtgtcctttgtaatacct 94
Query: 676 gcattatttaccag 689
||||| ||||||||
Sbjct: 93 gcattgtttaccag 80
>gb|DT636058.1|DT636058 EST1150989 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGN56 3' end, mRNA sequence
Length = 808
Score = 69.9 bits (35), Expect = 2e-010
Identities = 92/111 (82%)
Strand = Plus / Minus
Query: 579 ctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagattt 638
|||||||||||| || |||||||| ||||||| ||||| || || ||||||||||||||
Sbjct: 758 ctgtgtacaaagaaatacaccagtgagattcaagtcaatgacatcgtgccactgagattt 699
Query: 639 cttcatcctcatcaacaatgtgtctcgtgtaatccctgcattatttaccag 689
|||| ||||||| | |||||| |||||| |||||||| ||||||||
Sbjct: 698 tgtcattctcatcattagtgtgtcctttgtaatacctgcattgtttaccag 648
Score = 40.1 bits (20), Expect = 0.21
Identities = 68/84 (80%)
Strand = Plus / Minus
Query: 784 ccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatag 843
||||||| |||||||||| | | || || ||||||||||| || ||||||||||||
Sbjct: 553 ccaccagcagcttcaatctgtctagaaacatcttcagcctcctttatcgaccgggcatag 494
Query: 844 tttaccagaaccttgcatcctgct 867
|| || |||||||| || ||||||
Sbjct: 493 ttcacaagaaccttacagcctgct 470
>gb|BG317846.1|BG317846 NXPV_006_D03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_006_D03 5' similar to Arabidopsis
thaliana sequence At1g24360 putative 3-oxoacyl
[acyl-carrier protein] reductase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 531
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 262 ttaagggccaggaactcgaccaaccctgcaacttcctctggttggccata 311
||||| |||| |||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 195 ttaagagccaagaactccaccaaacctgcaacttcctccggttgtccata 146
>gb|BG319389.1|BG319389 NXPV_027_D01_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_027_D01 5' similar to Arabidopsis
thaliana sequence At1g24360 putative 3-oxoacyl
[acyl-carrier protein] reductase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 422
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 262 ttaagggccaggaactcgaccaaccctgcaacttcctctggttggccata 311
||||| |||| |||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 60 ttaagagccaagaactccaccaaacctgcaacttcctccggttgtccata 11
>gb|BI397935.1|BI397935 NXPV_112_D03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_112_D03 5' similar to Arabidopsis
thaliana sequence At1g24360 putative 3-oxoacyl
[acyl-carrier protein] reductase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 430
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 262 ttaagggccaggaactcgaccaaccctgcaacttcctctggttggccata 311
||||| |||| |||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 60 ttaagagccaagaactccaccaaacctgcaacttcctccggttgtccata 11
>gb|BQ696933.1|BQ696933 NXPV_047_A08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_047_A08 5' similar to Arabidopsis
thaliana sequence At1g24360 putative 3-oxoacyl
[acyl-carrier protein] reductase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 533
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 262 ttaagggccaggaactcgaccaaccctgcaacttcctctggttggccata 311
||||| |||| |||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 195 ttaagagccaagaactccaccaaacctgcaacttcctccggttgtccata 146
>gb|CD023139.1|CD023139 NXPV_100_G03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_100_G03 5' similar to Arabidopsis
thaliana sequence At1g24360 putative 3-oxoacyl
[acyl-carrier protein] reductase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 105
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 262 ttaagggccaggaactcgaccaaccctgcaacttcctctggttggccata 311
||||| |||| |||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 60 ttaagagccaagaactccaccaaacctgcaacttcctccggttgtccata 11
>gb|CF664018.1|CF664018 RTCNT1_6_F07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_6_F07_A029 5', mRNA sequence
Length = 251
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 262 ttaagggccaggaactcgaccaaccctgcaacttcctctggttggccata 311
||||| |||| |||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 98 ttaagagccaagaactccaccaaacctgcaacttcctccggttgtccata 49
>gb|CX646399.1|CX646399 COLD1_9_D05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_9_D05_A029 3', mRNA sequence
Length = 787
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 262 ttaagggccaggaactcgaccaaccctgcaacttcctctggttggccata 311
||||| |||| |||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 257 ttaagagccaagaactccaccaaacctgcaacttcctccggttgtccata 208
>gb|DR164347.1|DR164347 RTFE1_48_H05.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_48_H05_A029 3', mRNA sequence
Length = 893
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 262 ttaagggccaggaactcgaccaaccctgcaacttcctctggttggccata 311
||||| |||| |||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 70 ttaagagccaagaactccaccaaacctgcaacttcctccggttgtccata 21
>gb|DR386596.1|DR386596 RTHG1_16_F06.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_16_F06_A029 3', mRNA sequence
Length = 693
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 262 ttaagggccaggaactcgaccaaccctgcaacttcctctggttggccata 311
||||| |||| |||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 216 ttaagagccaagaactccaccaaacctgcaacttcctccggttgtccata 167
>gb|CD025117.1|CD025117 NXSI_009_F04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_009_F04 5' similar to Arabidopsis thaliana
sequence At1g24360 putative 3-oxoacyl [acyl-carrier
protein] reductase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 171
Score = 48.1 bits (24), Expect = 9e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 457 ccaatcactccagccttggctgcgctataattagcttggccaacattgccagtaagacca 516
||||| ||||| || |||||||| || ||||||||||| || | ||||||||| | ||||
Sbjct: 93 ccaataactcctgctttggctgcactgtaattagcttgccctatattgccagtcaaacca 34
Query: 517 actacaga 524
|| |||||
Sbjct: 33 accacaga 26
>gb|DR068649.1|DR068649 RTDK1_2_C05.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_2_C05_A029 3', mRNA sequence
Length = 658
Score = 42.1 bits (21), Expect = 0.054
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 625 tgccactgagatttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcattattt 684
|||||||||||||| |||| ||||||| | |||||| |||||| |||||||| |||
Sbjct: 12 tgccactgagattttgtcattctcatcattagtgtgtcctttgtaatacctgcattgttt 71
Query: 685 accag 689
|||||
Sbjct: 72 accag 76
Score = 40.1 bits (20), Expect = 0.21
Identities = 68/84 (80%)
Strand = Plus / Plus
Query: 784 ccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatag 843
||||||| |||||||||| | | || || ||||||||||| || ||||||||||||
Sbjct: 172 ccaccagcagcttcaatctgtctagaaacatcttcagcctcctttatcgaccgggcatag 231
Query: 844 tttaccagaaccttgcatcctgct 867
|| || |||||||| || ||||||
Sbjct: 232 ttcacaagaaccttacagcctgct 255
>gb|BQ290504.1|BQ290504 NXRV045_B02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV045_B02 5' similar to Arabidopsis thaliana
sequence At1g24360 putative 3-oxoacyl [acyl-carrier
protein] reductase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 484
Score = 40.1 bits (20), Expect = 0.21
Identities = 68/84 (80%)
Strand = Plus / Minus
Query: 784 ccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatag 843
||||||| |||||||||| | | || || ||||||||||| || ||||||||||||
Sbjct: 439 ccaccagcagcttcaatctgtctagaaacatcttcagcctcctttatcgaccgggcatag 380
Query: 844 tttaccagaaccttgcatcctgct 867
|| || |||||||| || ||||||
Sbjct: 379 ttcacaagaaccttacagcctgct 356
>gb|BQ698789.1|BQ698789 NXNV_063_H02_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_063_H02 5' similar to Arabidopsis thaliana
sequence At1g24360 putative 3-oxoacyl [acyl-carrier
protein] reductase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 229
Score = 40.1 bits (20), Expect = 0.21
Identities = 68/84 (80%)
Strand = Plus / Minus
Query: 784 ccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatag 843
||||||| |||||||||| | | || || ||||||||||| || ||||||||||||
Sbjct: 172 ccaccagcagcttcaatctgtctagaaacatcttcagcctcctttatcgaccgggcatag 113
Query: 844 tttaccagaaccttgcatcctgct 867
|| || |||||||| || ||||||
Sbjct: 112 ttcacaagaaccttacagcctgct 89
>gb|DR694408.1|DR694408 EST1084500 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEC12 3' end, mRNA sequence
Length = 581
Score = 40.1 bits (20), Expect = 0.21
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 832 gaccgggcatagtttaccagaaccttgcatcctgct 867
|||||||||||||| || |||||||| || ||||||
Sbjct: 377 gaccgggcatagttcacaagaaccttacagcctgct 342
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 184,173
Number of Sequences: 355925
Number of extensions: 184173
Number of successful extensions: 51255
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51140
Number of HSP's gapped (non-prelim): 114
length of query: 1252
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1233
effective length of database: 210,514,662
effective search space: 259564578246
effective search space used: 259564578246
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)