BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4424526.2.1
(1446 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AA740064.1|AA740064 829 PtIFG2 Pinus taeda cDNA clone 93... 58 1e-006
gb|AA556450.1|AA556450 305 Loblolly pine C Pinus taeda cDNA... 58 1e-006
gb|BE123545.1|BE123545 NXNV_149_E07_F Nsf Xylem Normal wood... 58 1e-006
gb|BG318123.1|BG318123 NXPV_010_F10_F NXPV (Nsf Xylem Plani... 58 1e-006
gb|BQ696208.1|BQ696208 NXPV_039_E09_F NXPV (Nsf Xylem Plani... 58 1e-006
gb|BQ698293.1|BQ698293 NXPV_065_H10_F NXPV (Nsf Xylem Plani... 58 1e-006
gb|CO163681.1|CO163681 FLD1_43_D01.b1_A029 Root flooded Pin... 58 1e-006
gb|CO166772.1|CO166772 FLD1_64_H08.b1_A029 Root flooded Pin... 58 1e-006
gb|CO197313.1|CO197313 GEO1_5_H12.b1_A029 Root gravitropism... 58 1e-006
gb|CO363671.1|CO363671 RTK1_11_D07.b1_A029 Roots minus pota... 58 1e-006
gb|CO364767.1|CO364767 RTK1_21_E03.g1_A029 Roots minus pota... 58 1e-006
gb|CV032891.1|CV032891 RTNACL1_19_A05.b1_A029 Roots plus ad... 58 1e-006
gb|CV032968.1|CV032968 RTNACL1_19_A05.g1_A029 Roots plus ad... 58 1e-006
gb|CV034718.1|CV034718 RTNACL1_11_D02.b1_A029 Roots plus ad... 58 1e-006
gb|CV035884.1|CV035884 RTNACL1_43_D03.b1_A029 Roots plus ad... 58 1e-006
gb|CX646717.1|CX646717 COLD1_11_C07.b1_A029 Root cold Pinus... 58 1e-006
gb|DR018059.1|DR018059 STRS1_20_E12.b1_A034 Shoot tip pitch... 58 1e-006
gb|DR018142.1|DR018142 STRS1_20_E12.g1_A034 Shoot tip pitch... 58 1e-006
gb|DR055490.1|DR055490 RTCA1_24_B08.b1_A029 Roots minus cal... 58 1e-006
gb|DR055546.1|DR055546 RTCA1_24_H09.b1_A029 Roots minus cal... 58 1e-006
gb|DR057003.1|DR057003 RTNIT1_2_A03.b1_A029 Roots minus nit... 58 1e-006
gb|DR069263.1|DR069263 RTDK1_6_B05.b1_A029 Roots, dark Pinu... 58 1e-006
gb|DR069326.1|DR069326 RTDK1_6_B05.g1_A029 Roots, dark Pinu... 58 1e-006
gb|DR070056.1|DR070056 RTDK1_11_B06.b1_A029 Roots, dark Pin... 58 1e-006
gb|DR070135.1|DR070135 RTDK1_11_B06.g1_A029 Roots, dark Pin... 58 1e-006
gb|DR079567.1|DR079567 RTFEPL1_12_D06.b1_A029 Roots plus ad... 58 1e-006
gb|DR159962.1|DR159962 RTFE1_2_F08.g1_A029 Roots minus iron... 58 1e-006
gb|DR160819.1|DR160819 RTFE1_8_F04.b1_A029 Roots minus iron... 58 1e-006
gb|DR168070.1|DR168070 RTPHOS1_23_B02.b1_A029 Roots minus p... 58 1e-006
gb|DR168222.1|DR168222 RTPHOS1_24_B01.b1_A029 Roots minus p... 58 1e-006
gb|DR179606.1|DR179606 RTMNUT1_23_E04.b2_A029 Roots minus m... 58 1e-006
gb|DR179770.1|DR179770 RTMNUT1_24_G02.b2_A029 Roots minus m... 58 1e-006
gb|DR179771.1|DR179771 RTMNUT1_24_G03.b2_A029 Roots minus m... 58 1e-006
gb|DR385058.1|DR385058 RTHG1_6_H04.b1_A029 Roots plus added... 58 1e-006
gb|DR745822.1|DR745822 RTCU1_32_F08.g1_A029 Roots plus adde... 58 1e-006
gb|DR745990.1|DR745990 RTCU1_34_A05.b1_A029 Roots plus adde... 58 1e-006
gb|AF081678.1|AF081678 Pinus taeda phenylcoumaran benzylic ... 58 1e-006
gb|AF242490.2|AF242490 Pinus taeda phenylcoumaran benzylic ... 58 1e-006
dbj|BD235278.1| Recombinant dehydrodiconiferyl alcohol benz... 58 1e-006
gb|BQ107871.1|BQ107871 NXLV101_G02_F NXLV (Nsf Xylem Late w... 50 3e-004
>gb|AA740064.1|AA740064 829 PtIFG2 Pinus taeda cDNA clone 9307M 3', mRNA sequence
Length = 601
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 248 aggtactcgtcgacggtggtgtatttcacatcagggtacag 208
>gb|AA556450.1|AA556450 305 Loblolly pine C Pinus taeda cDNA clone 4C10A, mRNA sequence
Length = 617
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 189 aggtactcgtcgacggtggtgtatttcacatcagggtacag 149
>gb|BE123545.1|BE123545 NXNV_149_E07_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_149_E07 5' similar to Arabidopsis thaliana
sequence At1g75290 NADPH oxidoreductase, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 428
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 321 aggtactcgtcgacggtggtgtatttcacatcagggtacag 281
>gb|BG318123.1|BG318123 NXPV_010_F10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_010_F10 5' similar to Arabidopsis
thaliana sequence At1g75290 NADPH oxidoreductase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 575
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 329 aggtactcgtcgacggtggtgtatttcacatcagggtacag 289
>gb|BQ696208.1|BQ696208 NXPV_039_E09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_039_E09 5' similar to Arabidopsis
thaliana sequence At1g75290 NADPH oxidoreductase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 474
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 329 aggtactcgtcgacggtggtgtatttcacatcagggtacag 289
>gb|BQ698293.1|BQ698293 NXPV_065_H10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_065_H10 5' similar to Arabidopsis
thaliana sequence At1g75290 NADPH oxidoreductase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 529
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 358 aggtactcgtcgacggtggtgtatttcacatcagggtacag 318
>gb|CO163681.1|CO163681 FLD1_43_D01.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_43_D01_A029 3', mRNA sequence
Length = 773
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 420 aggtactcgtcgacggtggtgtatttcacatcagggtacag 380
>gb|CO166772.1|CO166772 FLD1_64_H08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_64_H08_A029 3', mRNA sequence
Length = 805
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 560 aggtactcgtcgacggtggtgtatttcacatcagggtacag 520
>gb|CO197313.1|CO197313 GEO1_5_H12.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_5_H12_A029 3', mRNA sequence
Length = 677
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 426 aggtactcgtcgacggtggtgtatttcacatcagggtacag 386
>gb|CO363671.1|CO363671 RTK1_11_D07.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_11_D07_A029 3', mRNA sequence
Length = 844
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 498 aggtactcgtcgacggtggtgtatttcacatcagggtacag 458
>gb|CO364767.1|CO364767 RTK1_21_E03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_21_E03_A029 5', mRNA sequence
Length = 863
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 306 aggtactcgtcgacggtggtgtatttcacatcagggtacag 346
>gb|CV032891.1|CV032891 RTNACL1_19_A05.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_19_A05_A029 3', mRNA sequence
Length = 766
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 420 aggtactcgtcgacggtggtgtatttcacatcagggtacag 380
>gb|CV032968.1|CV032968 RTNACL1_19_A05.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_19_A05_A029 5', mRNA sequence
Length = 794
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 554 aggtactcgtcgacggtggtgtatttcacatcagggtacag 514
>gb|CV034718.1|CV034718 RTNACL1_11_D02.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_11_D02_A029 3', mRNA sequence
Length = 729
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 418 aggtactcgtcgacggtggtgtatttcacatcagggtacag 378
>gb|CV035884.1|CV035884 RTNACL1_43_D03.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_43_D03_A029 3', mRNA sequence
Length = 867
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 532 aggtactcgtcgacggtggtgtatttcacatcagggtacag 492
>gb|CX646717.1|CX646717 COLD1_11_C07.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_11_C07_A029 3', mRNA sequence
Length = 829
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 476 aggtactcgtcgacggtggtgtatttcacatcagggtacag 436
>gb|DR018059.1|DR018059 STRS1_20_E12.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_20_E12_A034 3', mRNA sequence
Length = 720
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 419 aggtactcgtcgacggtggtgtatttcacatcagggtacag 379
>gb|DR018142.1|DR018142 STRS1_20_E12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_20_E12_A034 5', mRNA sequence
Length = 753
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 475 aggtactcgtcgacggtggtgtatttcacatcagggtacag 435
>gb|DR055490.1|DR055490 RTCA1_24_B08.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_24_B08_A029 3', mRNA sequence
Length = 699
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 344 aggtactcgtcgacggtggtgtatttcacatcagggtacag 304
>gb|DR055546.1|DR055546 RTCA1_24_H09.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_24_H09_A029 3', mRNA sequence
Length = 751
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 395 aggtactcgtcgacggtggtgtatttcacatcagggtacag 355
>gb|DR057003.1|DR057003 RTNIT1_2_A03.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_2_A03_A029 3', mRNA sequence
Length = 774
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 420 aggtactcgtcgacggtggtgtatttcacatcagggtacag 380
>gb|DR069263.1|DR069263 RTDK1_6_B05.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_6_B05_A029 3', mRNA sequence
Length = 774
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 420 aggtactcgtcgacggtggtgtatttcacatcagggtacag 380
>gb|DR069326.1|DR069326 RTDK1_6_B05.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_6_B05_A029 5', mRNA sequence
Length = 867
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 508 aggtactcgtcgacggtggtgtatttcacatcagggtacag 468
>gb|DR070056.1|DR070056 RTDK1_11_B06.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_11_B06_A029 3', mRNA sequence
Length = 696
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 342 aggtactcgtcgacggtggtgtatttcacatcagggtacag 302
>gb|DR070135.1|DR070135 RTDK1_11_B06.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_11_B06_A029 5', mRNA sequence
Length = 709
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 503 aggtactcgtcgacggtggtgtatttcacatcagggtacag 463
>gb|DR079567.1|DR079567 RTFEPL1_12_D06.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_12_D06_A029 3', mRNA sequence
Length = 839
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 487 aggtactcgtcgacggtggtgtatttcacatcagggtacag 447
>gb|DR159962.1|DR159962 RTFE1_2_F08.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_2_F08_A029 5', mRNA sequence
Length = 666
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 201 aggtactcgtcgacggtggtgtatttcacatcagggtacag 241
>gb|DR160819.1|DR160819 RTFE1_8_F04.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_8_F04_A029 3', mRNA sequence
Length = 847
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 512 aggtactcgtcgacggtggtgtatttcacatcagggtacag 472
>gb|DR168070.1|DR168070 RTPHOS1_23_B02.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_23_B02_A029 3', mRNA sequence
Length = 648
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 175 aggtactcgtcgacggtggtgtatttcacatcagggtacag 135
>gb|DR168222.1|DR168222 RTPHOS1_24_B01.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_24_B01_A029 3', mRNA sequence
Length = 626
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 153 aggtactcgtcgacggtggtgtatttcacatcagggtacag 113
>gb|DR179606.1|DR179606 RTMNUT1_23_E04.b2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_23_E04_A029 3', mRNA sequence
Length = 737
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 391 aggtactcgtcgacggtggtgtatttcacatcagggtacag 351
>gb|DR179770.1|DR179770 RTMNUT1_24_G02.b2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_24_G02_A029 3', mRNA sequence
Length = 587
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 233 aggtactcgtcgacggtggtgtatttcacatcagggtacag 193
>gb|DR179771.1|DR179771 RTMNUT1_24_G03.b2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_24_G03_A029 3', mRNA sequence
Length = 547
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 193 aggtactcgtcgacggtggtgtatttcacatcagggtacag 153
>gb|DR385058.1|DR385058 RTHG1_6_H04.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_6_H04_A029 3', mRNA sequence
Length = 751
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 393 aggtactcgtcgacggtggtgtatttcacatcagggtacag 353
>gb|DR745822.1|DR745822 RTCU1_32_F08.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_32_F08_A029 5', mRNA sequence
Length = 459
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 316 aggtactcgtcgacggtggtgtatttcacatcagggtacag 356
>gb|DR745990.1|DR745990 RTCU1_34_A05.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_34_A05_A029 3', mRNA sequence
Length = 446
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 195 aggtactcgtcgacggtggtgtatttcacatcagggtacag 155
>gb|AF081678.1|AF081678 Pinus taeda phenylcoumaran benzylic ether reductase (DDCBER1) mRNA,
complete cds
Length = 1204
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 933 aggtactcgtcgacggtggtgtatttcacatcagggtacag 893
>gb|AF242490.2|AF242490 Pinus taeda phenylcoumaran benzylic ether reductase PT1 mRNA,
complete cds
Length = 1204
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 933 aggtactcgtcgacggtggtgtatttcacatcagggtacag 893
>dbj|BD235278.1| Recombinant dehydrodiconiferyl alcohol benzyl ether reductase and
method of using the same
Length = 926
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 911 aggtactcgtcgacggtggtgtatttcacatcagggtacag 871
>gb|BQ107871.1|BQ107871 NXLV101_G02_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV101_G02 5' similar to Arabidopsis thaliana
sequence At1g75290 NADPH oxidoreductase, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 518
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 500 aggtactcgtcgacggtggtgtacttgacatccgggtacag 540
|||||||| |||||||||||||| || ||||| ||||||||
Sbjct: 193 aggtactcatcgacggtggtgtatttcacatcagggtacag 153
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 132,350
Number of Sequences: 355925
Number of extensions: 132350
Number of successful extensions: 37957
Number of sequences better than 0.5: 40
Number of HSP's better than 0.5 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37895
Number of HSP's gapped (non-prelim): 62
length of query: 1446
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1427
effective length of database: 210,514,662
effective search space: 300404422674
effective search space used: 300404422674
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)