BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4005867.2.1
(1967 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CR377594.1| Pinus pinaster SSR, clone PPA1C03r 48 0.001
gb|DR013467.1|DR013467 HEAT1_19_B05.g1_A029 Root at 37 C fo... 44 0.022
gb|DR070485.1|DR070485 RTDK1_13_D04.g1_A029 Roots, dark Pin... 44 0.022
gb|CF479200.1|CF479200 RTWW3_24_E03.g1_A022 Well-watered lo... 42 0.085
gb|DR168448.1|DR168448 RTPHOS1_25_B11.g1_A029 Roots minus p... 42 0.085
dbj|BD236381.1| Materials and method for modification of pl... 42 0.085
emb|CR377593.1| Pinus pinaster SSR, clone PPA1C02 42 0.085
gb|DR048188.1|DR048188 RTBOR1_7_D11.b2_A029 Roots plus adde... 40 0.34
gb|DR048272.1|DR048272 RTBOR1_7_D11.g2_A029 Roots plus adde... 40 0.34
gb|DR048815.1|DR048815 RTBOR1_11_A05.g1_A029 Roots plus add... 40 0.34
emb|CR377509.1| Pinus pinaster SSR, clone PPA6E05 40 0.34
emb|CR377510.1| Pinus pinaster SSR, clone PPA6E05r 40 0.34
emb|CR377623.1| Pinus pinaster SSR, clone PPA1G05 40 0.34
emb|CR377670.1| Pinus pinaster SSR, clone PPA4C03 40 0.34
>emb|CR377594.1| Pinus pinaster SSR, clone PPA1C03r
Length = 457
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1744 cacacacgctcgcgcgcgcgcacacaca 1771
||||||||| ||||||||||||||||||
Sbjct: 90 cacacacgcgcgcgcgcgcgcacacaca 63
>gb|DR013467.1|DR013467 HEAT1_19_B05.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_19_B05_A029 5', mRNA sequence
Length = 741
Score = 44.1 bits (22), Expect = 0.022
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 1189 gtctccggcaccatcgacttcatcttcggcaactcggc 1226
|||| ||||||||| || ||||||||||||||| ||||
Sbjct: 210 gtctacggcaccatagatttcatcttcggcaacgcggc 247
>gb|DR070485.1|DR070485 RTDK1_13_D04.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_13_D04_A029 5', mRNA sequence
Length = 854
Score = 44.1 bits (22), Expect = 0.022
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 1189 gtctccggcaccatcgacttcatcttcggcaactcggc 1226
|||| ||||||||| || ||||||||||||||| ||||
Sbjct: 119 gtctacggcaccatagatttcatcttcggcaacgcggc 156
>gb|CF479200.1|CF479200 RTWW3_24_E03.g1_A022 Well-watered loblolly pine roots WW3 Pinus taeda
cDNA clone RTWW3_24_E03_A022 5', mRNA sequence
Length = 753
Score = 42.1 bits (21), Expect = 0.085
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1194 cggcaccatcgacttcatcttcggcaactcggc 1226
||||||||| || ||||||||||||||| ||||
Sbjct: 33 cggcaccatagatttcatcttcggcaacgcggc 65
>gb|DR168448.1|DR168448 RTPHOS1_25_B11.g1_A029 Roots minus phosphorous Pinus taeda cDNA clone
RTPHOS1_25_B11_A029 5', mRNA sequence
Length = 629
Score = 42.1 bits (21), Expect = 0.085
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1194 cggcaccatcgacttcatcttcggcaactcggc 1226
||||||||| || ||||||||||||||| ||||
Sbjct: 235 cggcaccatagatttcatcttcggcaacgcggc 267
>dbj|BD236381.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 440
Score = 42.1 bits (21), Expect = 0.085
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1195 ggcaccatcgacttcatcttcggcaactc 1223
|||||||| || |||||||||||||||||
Sbjct: 371 ggcaccatagatttcatcttcggcaactc 399
>emb|CR377593.1| Pinus pinaster SSR, clone PPA1C02
Length = 499
Score = 42.1 bits (21), Expect = 0.085
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1747 acacgctcgcgcgcgcgcacacaca 1771
|||||| ||||||||||||||||||
Sbjct: 430 acacgcgcgcgcgcgcgcacacaca 454
>gb|DR048188.1|DR048188 RTBOR1_7_D11.b2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_7_D11_A029 3', mRNA sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 893 ccaaggacaaggtcaacatc 912
||||||||||||||||||||
Sbjct: 224 ccaaggacaaggtcaacatc 243
>gb|DR048272.1|DR048272 RTBOR1_7_D11.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_7_D11_A029 5', mRNA sequence
Length = 559
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 893 ccaaggacaaggtcaacatc 912
||||||||||||||||||||
Sbjct: 203 ccaaggacaaggtcaacatc 222
>gb|DR048815.1|DR048815 RTBOR1_11_A05.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_11_A05_A029 5', mRNA sequence
Length = 584
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 893 ccaaggacaaggtcaacatc 912
||||||||||||||||||||
Sbjct: 197 ccaaggacaaggtcaacatc 216
>emb|CR377509.1| Pinus pinaster SSR, clone PPA6E05
Length = 595
Score = 40.1 bits (20), Expect = 0.34
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1744 cacacacgctcgcgcgcgcgcacacaca 1771
|||| |||| ||||||||||||||||||
Sbjct: 335 cacaaacgcgcgcgcgcgcgcacacaca 362
>emb|CR377510.1| Pinus pinaster SSR, clone PPA6E05r
Length = 303
Score = 40.1 bits (20), Expect = 0.34
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1744 cacacacgctcgcgcgcgcgcacacaca 1771
|||| |||| ||||||||||||||||||
Sbjct: 214 cacaaacgcgcgcgcgcgcgcacacaca 187
>emb|CR377623.1| Pinus pinaster SSR, clone PPA1G05
Length = 476
Score = 40.1 bits (20), Expect = 0.34
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1744 cacacacgctcgcgcgcgcgcacacaca 1771
||||| ||| ||||||||||||||||||
Sbjct: 373 cacacgcgcacgcgcgcgcgcacacaca 400
>emb|CR377670.1| Pinus pinaster SSR, clone PPA4C03
Length = 587
Score = 40.1 bits (20), Expect = 0.34
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1744 cacacacgctcgcgcgcgcgcacacaca 1771
|||||| || ||||||||||||||||||
Sbjct: 255 cacacaggcacgcgcgcgcgcacacaca 228
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 171,548
Number of Sequences: 355925
Number of extensions: 171548
Number of successful extensions: 47309
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47282
Number of HSP's gapped (non-prelim): 24
length of query: 1967
length of database: 217,277,237
effective HSP length: 20
effective length of query: 1947
effective length of database: 210,158,737
effective search space: 409179060939
effective search space used: 409179060939
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)