BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3871878.2.1
(950 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR684166.1|DR684166 EST1074243 Normalized pine embryo li... 151 6e-035
gb|CO367783.1|CO367783 RTK1_36_C12.g1_A029 Roots minus pota... 115 3e-024
gb|BG317512.1|BG317512 NXPV_002_F10_F NXPV (Nsf Xylem Plani... 94 1e-017
gb|BG526951.1|BG526951 NXPV_057_G05_F NXPV (Nsf Xylem Plani... 94 1e-017
gb|BQ697805.1|BQ697805 NXPV_061_A10_F NXPV (Nsf Xylem Plani... 94 1e-017
gb|DR684272.1|DR684272 EST1074349 Normalized pine embryo li... 94 1e-017
gb|BI202802.1|BI202802 NXPV_090_F11_F NXPV (Nsf Xylem Plani... 90 2e-016
gb|BQ696304.1|BQ696304 NXPV_037_G06_F NXPV (Nsf Xylem Plani... 90 2e-016
gb|BQ696316.1|BQ696316 NXPV_037_H09_F NXPV (Nsf Xylem Plani... 90 2e-016
gb|BQ696619.1|BQ696619 NXPV_043_C09_F NXPV (Nsf Xylem Plani... 90 2e-016
gb|AL750350.1|AL750350 AL750350 RN Pinus pinaster cDNA clon... 86 3e-015
gb|BX251375.1|BX251375 BX251375 Pinus pinaster differenciat... 86 3e-015
gb|BX252587.1|BX252587 BX252587 Pinus pinaster differenciat... 86 3e-015
gb|BX254312.1|BX254312 BX254312 Pinus pinaster differenciat... 86 3e-015
gb|BX254898.1|BX254898 BX254898 Pinus pinaster differenciat... 86 3e-015
gb|DR691657.1|DR691657 EST1081744 Normalized pine embryo li... 86 3e-015
gb|DT631983.1|DT631983 EST1146914 Normalized pine embryo li... 86 3e-015
gb|AW290603.1|AW290603 NXNV044A08F Nsf Xylem Normal wood Ve... 82 5e-014
gb|BE209115.1|BE209115 NXNV_164_A09_F Nsf Xylem Normal wood... 82 5e-014
gb|BE582468.1|BE582468 NXCI_033_G07_F NXCI (Nsf Xylem Compr... 82 5e-014
gb|BF778456.1|BF778456 NXSI_085_A03_F NXSI (Nsf Xylem Side ... 82 5e-014
gb|CD027267.1|CD027267 NXNV044A08 Nsf Xylem Normal wood Ver... 82 5e-014
gb|CF389128.1|CF389128 RTDR2_13_D11.g1_A021 Loblolly pine r... 82 5e-014
gb|CO158722.1|CO158722 FLD1_8_G04.g1_A029 Root flooded Pinu... 82 5e-014
gb|CO166181.1|CO166181 FLD1_59_H09.g1_A029 Root flooded Pin... 82 5e-014
gb|CO200454.1|CO200454 GEO2_7_C04.g1_A032 Root gravitropism... 82 5e-014
gb|CV032365.1|CV032365 RTNACL1_7_D03.g2_A029 Roots plus add... 82 5e-014
gb|CX646143.1|CX646143 COLD1_7_C08.g1_A029 Root cold Pinus ... 82 5e-014
gb|CX650089.1|CX650089 COLD1_43_A08.g1_A029 Root cold Pinus... 82 5e-014
gb|CX652868.1|CX652868 COLD1_62_B04.b1_A029 Root cold Pinus... 82 5e-014
gb|CX713895.1|CX713895 RTPQ1_14_D01.g1_A032 Roots treated w... 82 5e-014
gb|DR048707.1|DR048707 RTBOR1_10_E05.g1_A029 Roots plus add... 82 5e-014
gb|DR061070.1|DR061070 RTNIT1_31_H03.g1_A029 Roots minus ni... 82 5e-014
gb|DR069271.1|DR069271 RTDK1_6_C04.b1_A029 Roots, dark Pinu... 82 5e-014
gb|DR069574.1|DR069574 RTDK1_8_C04.b1_A029 Roots, dark Pinu... 82 5e-014
gb|DR079802.1|DR079802 RTFEPL1_17_F12.g1_A029 Roots plus ad... 82 5e-014
gb|DR094453.1|DR094453 STRR1_14_E02.g1_A033 Stem Response R... 82 5e-014
gb|BX254051.1|BX254051 BX254051 Pinus pinaster differenciat... 80 2e-013
gb|BX255353.1|BX255353 BX255353 Pinus pinaster differenciat... 80 2e-013
gb|BQ700846.1|BQ700846 NXRV112_B12_F NXRV (Nsf Xylem Root w... 80 2e-013
gb|CF479544.1|CF479544 RTWW3_22_G10.g1_A022 Well-watered lo... 80 2e-013
gb|DR092788.1|DR092788 STRR1_4_A12.b1_A033 Stem Response Re... 80 2e-013
gb|DR092855.1|DR092855 STRR1_4_A12.g1_A033 Stem Response Re... 80 2e-013
gb|DR100307.1|DR100307 STRR1_63_E02.b1_A033 Stem Response R... 80 2e-013
gb|BE209359.1|BE209359 NXNV_166_G11_F Nsf Xylem Normal wood... 78 7e-013
gb|BQ695460.1|BQ695460 NXPV_028_G04_F NXPV (Nsf Xylem Plani... 78 7e-013
gb|BQ699855.1|BQ699855 NXRV122_E03_F NXRV (Nsf Xylem Root w... 78 7e-013
gb|BQ701694.1|BQ701694 NXSI_118_E04_F NXSI (Nsf Xylem Side ... 78 7e-013
gb|BQ702273.1|BQ702273 NXSI_126_H01_F NXSI (Nsf Xylem Side ... 78 7e-013
gb|BE582441.1|BE582441 NXCI_033_D07_F NXCI (Nsf Xylem Compr... 76 3e-012
gb|BE996944.1|BE996944 NXCI_102_G11_F NXCI (Nsf Xylem Compr... 76 3e-012
gb|DT634473.1|DT634473 EST1149404 Normalized pine embryo li... 74 1e-011
gb|BF777618.1|BF777618 NXSI_070_F01_F NXSI (Nsf Xylem Side ... 72 5e-011
gb|BG040768.1|BG040768 NXSI_114_H01_F NXSI (Nsf Xylem Side ... 72 5e-011
gb|BQ701890.1|BQ701890 NXSI_121_H02_F NXSI (Nsf Xylem Side ... 72 5e-011
gb|CD024639.1|CD024639 NXRV067_G06_F NXRV (Nsf Xylem Root w... 72 5e-011
gb|AI920246.1|AI920246 1776 Pine Lambda Zap Xylem library P... 70 2e-010
gb|BX254121.1|BX254121 BX254121 Pinus pinaster differenciat... 66 3e-009
gb|AW758946.1|AW758946 NXNV_095_F06_F Nsf Xylem Normal wood... 66 3e-009
gb|BM492654.1|BM492654 NXRV_029_B09_F NXRV (Nsf Xylem Root ... 66 3e-009
gb|DR384279.1|DR384279 RTHG1_1_E12.b1_A029 Roots plus added... 66 3e-009
gb|DR682085.1|DR682085 EST1072160 Normalized pine embryo li... 66 3e-009
gb|BX254029.1|BX254029 BX254029 Pinus pinaster differenciat... 64 1e-008
gb|BE123636.1|BE123636 NXNV_150_A12_F Nsf Xylem Normal wood... 64 1e-008
gb|BE123641.1|BE123641 NXNV_150_B11_F Nsf Xylem Normal wood... 64 1e-008
gb|BG040600.1|BG040600 NXSI_113_A01_F NXSI (Nsf Xylem Side ... 64 1e-008
gb|BG319008.1|BG319008 NXPV_022_E04_F NXPV (Nsf Xylem Plani... 64 1e-008
gb|BG832809.1|BG832809 NXPV_081_A01_F NXPV (Nsf Xylem Plani... 64 1e-008
gb|BQ695559.1|BQ695559 NXPV_030_A03_F NXPV (Nsf Xylem Plani... 64 1e-008
gb|BQ696029.1|BQ696029 NXPV_035_F01_F NXPV (Nsf Xylem Plani... 64 1e-008
gb|BQ696902.1|BQ696902 NXPV_046_F10_F NXPV (Nsf Xylem Plani... 64 1e-008
gb|BQ697176.1|BQ697176 NXPV_050_D09_F NXPV (Nsf Xylem Plani... 64 1e-008
gb|BQ698583.1|BQ698583 NXPV_071_F08_F NXPV (Nsf Xylem Plani... 64 1e-008
gb|CD022511.1|CD022511 NXPV_058_E01_F NXPV (Nsf Xylem Plani... 64 1e-008
gb|BF186296.1|BF186296 NXCI_135_G02_F NXCI (Nsf Xylem Compr... 62 4e-008
gb|CD025786.1|CD025786 NXSI_081_C08_F NXSI (Nsf Xylem Side ... 62 4e-008
gb|CO370420.1|CO370420 RTK1_67_F07.g1_A029 Roots minus pota... 62 4e-008
gb|BF609214.1|BF609214 NXSI_041_F09_F NXSI (Nsf Xylem Side ... 60 2e-007
gb|BG040272.1|BG040272 NXSI_110_E01_F NXSI (Nsf Xylem Side ... 60 2e-007
gb|BM428535.1|BM428535 NXRV_018_B04_F NXRV (Nsf Xylem Root ... 60 2e-007
gb|BQ654528.1|BQ654528 NXRV081_D12_F NXRV (Nsf Xylem Root w... 60 2e-007
gb|BQ697144.1|BQ697144 NXPV_050_A11_F NXPV (Nsf Xylem Plani... 60 2e-007
gb|BX254458.1|BX254458 BX254458 Pinus pinaster differenciat... 58 7e-007
gb|BX255109.1|BX255109 BX255109 Pinus pinaster differenciat... 58 7e-007
gb|BE241113.1|BE241113 NXNV_173_A08_F Nsf Xylem Normal wood... 58 7e-007
gb|BE496383.1|BE496383 NXCI_017_A02_F NXCI (Nsf Xylem Compr... 58 7e-007
gb|CD025271.1|CD025271 NXSI_035_G08_F NXSI (Nsf Xylem Side ... 58 7e-007
gb|CO166920.1|CO166920 FLD1_65_A12.g1_A029 Root flooded Pin... 58 7e-007
gb|CO169507.1|CO169507 NDL1_7_B11.g1_A029 Needles control P... 58 7e-007
gb|DR081469.1|DR081469 RTFEPL1_29_G11.g1_A029 Roots plus ad... 54 1e-005
gb|CD021482.1|CD021482 NXNV_145_G07_F Nsf Xylem Normal wood... 52 4e-005
gb|BX676890.1|BX676890 BX676890 RN Pinus pinaster cDNA clon... 50 2e-004
gb|CO162913.1|CO162913 FLD1_38_G02.b1_A029 Root flooded Pin... 50 2e-004
gb|CO168770.1|CO168770 NDL1_2_A02.g1_A029 Needles control P... 50 2e-004
gb|CO169434.1|CO169434 NDL1_7_B11.b1_A029 Needles control P... 50 2e-004
gb|CV033955.1|CV033955 RTNACL1_37_D08.g1_A029 Roots plus ad... 50 2e-004
gb|BF517974.1|BF517974 NXSI_032_D03_F NXSI (Nsf Xylem Side ... 48 7e-004
gb|CX650237.1|CX650237 COLD1_44_H04.b1_A029 Root cold Pinus... 48 7e-004
gb|AW888016.1|AW888016 NXNV_105_H05_F Nsf Xylem Normal wood... 46 0.003
gb|BF777292.1|BF777292 NXSI_067_D10_F NXSI (Nsf Xylem Side ... 46 0.003
gb|BG319377.1|BG319377 NXPV_027_B04_F NXPV (Nsf Xylem Plani... 46 0.003
gb|BM492831.1|BM492831 NXRV_031_E12_F NXRV (Nsf Xylem Root ... 46 0.003
gb|CD024484.1|CD024484 NXRV_043_D06_F NXRV (Nsf Xylem Root ... 46 0.003
gb|DR072662.1|DR072662 RTDK1_27_F10.g1_A029 Roots, dark Pin... 46 0.003
gb|DR100372.1|DR100372 STRR1_63_E02.g1_A033 Stem Response R... 46 0.003
gb|BX253417.1|BX253417 BX253417 Pinus pinaster differenciat... 42 0.041
gb|DR056998.1|DR056998 RTNIT1_1_H09.g1_A029 Roots minus nit... 42 0.041
gb|BX253086.1|BX253086 BX253086 Pinus pinaster differenciat... 40 0.16
gb|AW758685.1|AW758685 NXNV_085_C06_F Nsf Xylem Normal wood... 40 0.16
gb|AW784129.1|AW784129 NXNV_103_E03_F Nsf Xylem Normal wood... 40 0.16
gb|BE209218.1|BE209218 NXNV_147_E01_F Nsf Xylem Normal wood... 40 0.16
gb|BG275186.1|BG275186 NXSI_140_H02_F NXSI (Nsf Xylem Side ... 40 0.16
gb|BG275851.1|BG275851 NXSI_148_F04_F NXSI (Nsf Xylem Side ... 40 0.16
gb|CD024512.1|CD024512 NXRV_044_A01_F NXRV (Nsf Xylem Root ... 40 0.16
gb|CV036240.1|CV036240 RTNACL1_57_F03.g1_A029 Roots plus ad... 40 0.16
gb|CX646821.1|CX646821 COLD1_11_E12.g1_A029 Root cold Pinus... 40 0.16
gb|DR048632.1|DR048632 RTBOR1_10_E05.b1_A029 Roots plus add... 40 0.16
gb|DR049907.1|DR049907 RTBOR1_19_H03.g1_A029 Roots plus add... 40 0.16
gb|DR688096.1|DR688096 EST1078180 Normalized pine embryo li... 40 0.16
>gb|DR684166.1|DR684166 EST1074243 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAP61 3' end, mRNA sequence
Length = 736
Score = 151 bits (76), Expect = 6e-035
Identities = 316/396 (79%)
Strand = Plus / Minus
Query: 1 accataaactgtcattggttgtcttcgtagtgcctgtgcaacaaaattgctgaccacgcg 60
|||||||||||||| |||| | | || |||||||| |||||||| ||||| || || ||
Sbjct: 397 accataaactgtcaaaggttctttgcgcagtgcctgagcaacaaagttgctaacaacacg 338
Query: 61 gccatcatcgagacacatacgaggaccatatgtattgaaaatgcgggcaatacgcacctc 120
| ||||||||| ||||| | || |||||||| ||||| || || ||||| || |||||
Sbjct: 337 gtcatcatcgatgcacattctgggtccatatgtgttgaatatacgtgcaatgcggacctc 278
Query: 121 aacaccagcaccacgatgatagtccatagttgaagtctcggctgttctcttcccctcatc 180
||| || || || ||||||||||| || ||||||| ||||| | || ||||||||
Sbjct: 277 cacattggccccccggtgatagtccatcgtcaaagtctcagctgtacgtttgccctcatc 218
Query: 181 ataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgtggatg 240
||||||||| |||||||| |||||||| || | ||||| |||| |||| ||||||||||
Sbjct: 217 ataacagcttctaacacctataggattgacatttccccaatatgtctccgtctgtggatg 158
Query: 241 ctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcaccaactcg 300
|| || ||||| ||||| || |||||||| || || | ||| || | || |||| |||
Sbjct: 157 ctggagaggatccccatatacctcacttgtactggtaagcaagaagcgggctccaattcg 98
Query: 301 ctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtcttgattgg 360
||||||||||||| ||| ||||| || ||||| |||||||||||||| ||||| | ||
Sbjct: 97 ttttgccagacccagcatgttcaatgtccccatcacatttgtcttgattgtcttcacagg 38
Query: 361 gttatacttgtaatgaacgggcgacgcggggcatgc 396
|| ||||||| |||||||| ||||| ||||||||
Sbjct: 37 attgaacttgtagtgaacgggagacgcagggcatgc 2
>gb|CO367783.1|CO367783 RTK1_36_C12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_36_C12_A029 5', mRNA sequence
Length = 792
Score = 115 bits (58), Expect = 3e-024
Identities = 217/270 (80%)
Strand = Plus / Minus
Query: 1 accataaactgtcattggttgtcttcgtagtgcctgtgcaacaaaattgctgaccacgcg 60
|||||||||||||| |||| | | || |||||||| |||||||| ||||| || || ||
Sbjct: 316 accataaactgtcaaaggttctttgcgcagtgcctgagcaacaaagttgctaacaacacg 257
Query: 61 gccatcatcgagacacatacgaggaccatatgtattgaaaatgcgggcaatacgcacctc 120
||||||||||| ||||| | || |||||||| ||||| || || ||||| || |||||
Sbjct: 256 gccatcatcgatgcacattctgggtccatatgtgttgaatatacgtgcaatgcggacctc 197
Query: 121 aacaccagcaccacgatgatagtccatagttgaagtctcggctgttctcttcccctcatc 180
||| || || || ||||||||||| || ||||||| ||||| | || ||||||||
Sbjct: 196 cacattggccccccggtgatagtccatcgtcaaagtctcagctgtacgtttgccctcatc 137
Query: 181 ataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgtggatg 240
||||||||| |||||||| |||||||| || | ||||| |||| |||| ||||||||||
Sbjct: 136 ataacagcttctaacaccgataggattgacatttccccaatatgtctccgtctgtggatg 77
Query: 241 ctcaagtggatcaccataaacttcacttgt 270
|| || ||||| ||||| || ||||||||
Sbjct: 76 ctggagaggatccccatatacctcacttgt 47
>gb|BG317512.1|BG317512 NXPV_002_F10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_002_F10 5' similar to Arabidopsis
thaliana sequence At2g47650 putative nucleotide-sugar
dehydratase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 483
Score = 93.7 bits (47), Expect = 1e-017
Identities = 254/323 (78%)
Strand = Plus / Minus
Query: 32 gcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatat 91
||||| ||||||||||| || || || || |||||||| || ||||| || ||||| |||
Sbjct: 336 gcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccgtat 277
Query: 92 gtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccatagtt 151
||||||||||| |||||||| || ||||||||| || || | ||||| ||||||||
Sbjct: 276 gtattgaaaattcgggcaatccgaacctcaacatttgctcccctgtgataatccatagtc 217
Query: 152 gaagtctcggctgttctcttcccctcatcataacagctcctaacaccaataggattaacg 211
||| |||||||||||||| ||||||||||| || || | || || || ||||||||
Sbjct: 216 agagtttcggctgttctcttaccctcatcatagcaactgcggactccgatgggattaaca 157
Query: 212 tgcccccagtatgactccttctgtggatgctcaagtggatcaccataaacttcacttgtg 271
| |||||||| | || | || ||||| ||||| ||||| |||||||||||||| ||
Sbjct: 156 ttgccccagtaagcttcagtttgaggatgttcaagaggatctccataaacttcactggta 97
Query: 272 ctagtcaacaaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttccc 331
|| || | |||||| | ||| ||||| ||||| || || || | ||| ||||| ||||||
Sbjct: 96 cttgtaagcaaaaagcgtgccccaacacgcttggcaagtccgagcatgttcaaggttccc 37
Query: 332 atgacatttgtcttgatcgtctt 354
| ||||| || ||||| |||||
Sbjct: 36 acaacattagttttgatagtctt 14
>gb|BG526951.1|BG526951 NXPV_057_G05_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_057_G05 5' similar to Arabidopsis
thaliana sequence At2g47650 putative nucleotide-sugar
dehydratase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 609
Score = 93.7 bits (47), Expect = 1e-017
Identities = 254/323 (78%)
Strand = Plus / Minus
Query: 32 gcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatat 91
||||| ||||||||||| || || || || |||||||| || ||||| || ||||| |||
Sbjct: 336 gcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccgtat 277
Query: 92 gtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccatagtt 151
||||||||||| |||||||| || ||||||||| || || | ||||| ||||||||
Sbjct: 276 gtattgaaaattcgggcaatccgaacctcaacatttgctcccctgtgataatccatagtc 217
Query: 152 gaagtctcggctgttctcttcccctcatcataacagctcctaacaccaataggattaacg 211
||| |||||||||||||| ||||||||||| || || | || || || ||||||||
Sbjct: 216 agagtttcggctgttctcttaccctcatcatagcaactgcggactccgatgggattaaca 157
Query: 212 tgcccccagtatgactccttctgtggatgctcaagtggatcaccataaacttcacttgtg 271
| |||||||| | || | || ||||| ||||| ||||| |||||||||||||| ||
Sbjct: 156 ttgccccagtaagcttcagtttgaggatgttcaagaggatctccataaacttcactggta 97
Query: 272 ctagtcaacaaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttccc 331
|| || | |||||| | ||| ||||| ||||| || || || | ||| ||||| ||||||
Sbjct: 96 cttgtaagcaaaaagcgtgccccaacacgcttggcaagtccgagcatgttcaaggttccc 37
Query: 332 atgacatttgtcttgatcgtctt 354
| ||||| || ||||| |||||
Sbjct: 36 acaacattagttttgatagtctt 14
>gb|BQ697805.1|BQ697805 NXPV_061_A10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_061_A10 5' similar to Arabidopsis
thaliana sequence At3g62830 dTDP-glucose 4-6-dehydratase
homolog D18 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 509
Score = 93.7 bits (47), Expect = 1e-017
Identities = 254/323 (78%)
Strand = Plus / Minus
Query: 32 gcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatat 91
||||| ||||||||||| || || || || |||||||| || ||||| || ||||| |||
Sbjct: 336 gcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccgtat 277
Query: 92 gtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccatagtt 151
||||||||||| |||||||| || ||||||||| || || | ||||| ||||||||
Sbjct: 276 gtattgaaaattcgggcaatccgaacctcaacatttgctcccctgtgataatccatagtc 217
Query: 152 gaagtctcggctgttctcttcccctcatcataacagctcctaacaccaataggattaacg 211
||| |||||||||||||| ||||||||||| || || | || || || ||||||||
Sbjct: 216 agagtttcggctgttctcttaccctcatcatagcaactgcggactccgatgggattaaca 157
Query: 212 tgcccccagtatgactccttctgtggatgctcaagtggatcaccataaacttcacttgtg 271
| |||||||| | || | || ||||| ||||| ||||| |||||||||||||| ||
Sbjct: 156 ttgccccagtaagcttcagtttgaggatgttcaagaggatctccataaacttcactggta 97
Query: 272 ctagtcaacaaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttccc 331
|| || | |||||| | ||| ||||| ||||| || || || | ||| ||||| ||||||
Sbjct: 96 cttgtaagcaaaaagcgtgccccaacacgcttggcaagtccgagcatgttcaaggttccc 37
Query: 332 atgacatttgtcttgatcgtctt 354
| ||||| || ||||| |||||
Sbjct: 36 acaacattagttttgatagtctt 14
>gb|DR684272.1|DR684272 EST1074349 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAQ80 3' end, mRNA sequence
Length = 776
Score = 93.7 bits (47), Expect = 1e-017
Identities = 254/323 (78%)
Strand = Plus / Minus
Query: 32 gcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatat 91
||||| ||||||||||| || || || || |||||||| || ||||| || ||||| |||
Sbjct: 614 gcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccgtat 555
Query: 92 gtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccatagtt 151
||||||||||| || ||||| || ||||||||| || || | ||||| ||||||||
Sbjct: 554 gtattgaaaattcgagcaatccgaacctcaacatttgctcccctgtgataatccatagtc 495
Query: 152 gaagtctcggctgttctcttcccctcatcataacagctcctaacaccaataggattaacg 211
||| |||||||||||||| ||||||||||| || || | ||| || || ||||||||
Sbjct: 494 agagtttcggctgttctcttaccctcatcatagcaactgcgaactccgatgggattaaca 435
Query: 212 tgcccccagtatgactccttctgtggatgctcaagtggatcaccataaacttcacttgtg 271
| |||||||| | || | || ||||| ||||| ||||| |||||||||||||| ||
Sbjct: 434 ttgccccagtaagcttcagtttgaggatgttcaagaggatctccataaacttcactggta 375
Query: 272 ctagtcaacaaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttccc 331
|| || | |||||| | ||| ||||| ||||| || || || | ||| ||||| ||||||
Sbjct: 374 cttgtaagcaaaaagcgtgccccaacacgcttggcaagtccgagcatgttcaaggttccc 315
Query: 332 atgacatttgtcttgatcgtctt 354
| ||||| || ||||| |||||
Sbjct: 314 acaacattagttttgatagtctt 292
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 491 ttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtc 537
||||||||||| || |||||||| |||||||| ||||| || |||||
Sbjct: 155 ttctccttccttcctgtgaagaaattgtcgacaacgataacactgtc 109
>gb|BI202802.1|BI202802 NXPV_090_F11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_090_F11 5' similar to Arabidopsis
thaliana sequence At3g62830 dTDP-glucose 4-6-dehydratase
homolog D18 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 500
Score = 89.7 bits (45), Expect = 2e-016
Identities = 249/317 (78%)
Strand = Plus / Minus
Query: 38 gcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatatgtattg 97
||||||||||| || || || || |||||||| || ||||| || ||||| |||||||||
Sbjct: 330 gcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccgtatgtattg 271
Query: 98 aaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccatagttgaagtc 157
||||| |||||||| || ||||||||| || || | ||||| |||||||| |||
Sbjct: 270 aaaattcgggcaatccgaacctcaacatttgctcccctgtgataatccatagtcagagtt 211
Query: 158 tcggctgttctcttcccctcatcataacagctcctaacaccaataggattaacgtgcccc 217
|||||||||||||| ||||||||||| || || | || || || |||||||| | |||
Sbjct: 210 tcggctgttctcttaccctcatcatagcaactgcggactccgatgggattaacattgccc 151
Query: 218 cagtatgactccttctgtggatgctcaagtggatcaccataaacttcacttgtgctagtc 277
||||| | || | || ||||| ||||| ||||| |||||||||||||| || || ||
Sbjct: 150 cagtaagcttcagtttgaggatgttcaagaggatctccataaacttcactggtacttgta 91
Query: 278 aacaaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgaca 337
| |||||| | ||| ||||| ||||| || || || | ||| ||||| ||||||| |||
Sbjct: 90 agcaaaaagcgtgccccaacacgcttggcaagtccgagcatgttcaaggttcccacaaca 31
Query: 338 tttgtcttgatcgtctt 354
|| || ||||| |||||
Sbjct: 30 ttagttttgatagtctt 14
>gb|BQ696304.1|BQ696304 NXPV_037_G06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_037_G06 5' similar to Arabidopsis
thaliana sequence At2g47650 putative nucleotide-sugar
dehydratase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 470
Score = 89.7 bits (45), Expect = 2e-016
Identities = 249/317 (78%)
Strand = Plus / Minus
Query: 38 gcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatatgtattg 97
||||||||||| || || || || |||||||| || ||||| || ||||| |||||||||
Sbjct: 330 gcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccgtatgtattg 271
Query: 98 aaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccatagttgaagtc 157
||||| |||||||| || ||||||||| || || | ||||| |||||||| |||
Sbjct: 270 aaaattcgggcaatccgaacctcaacatttgctcccctgtgataatccatagtcagagtt 211
Query: 158 tcggctgttctcttcccctcatcataacagctcctaacaccaataggattaacgtgcccc 217
|||||||||||||| ||||||||||| || || | || || || |||||||| | |||
Sbjct: 210 tcggctgttctcttaccctcatcatagcaactgcggactccgatgggattaacattgccc 151
Query: 218 cagtatgactccttctgtggatgctcaagtggatcaccataaacttcacttgtgctagtc 277
||||| | || | || ||||| ||||| ||||| |||||||||||||| || || ||
Sbjct: 150 cagtaagcttcagtttgaggatgttcaagaggatctccataaacttcactggtacttgta 91
Query: 278 aacaaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgaca 337
| |||||| | ||| ||||| ||||| || || || | ||| ||||| ||||||| |||
Sbjct: 90 agcaaaaagcgtgccccaacacgcttggcaagtccgagcatgttcaaggttcccacaaca 31
Query: 338 tttgtcttgatcgtctt 354
|| || ||||| |||||
Sbjct: 30 ttagttttgatagtctt 14
>gb|BQ696316.1|BQ696316 NXPV_037_H09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_037_H09 5' similar to Arabidopsis
thaliana sequence At2g47650 putative nucleotide-sugar
dehydratase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 487
Score = 89.7 bits (45), Expect = 2e-016
Identities = 249/317 (78%)
Strand = Plus / Minus
Query: 38 gcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatatgtattg 97
||||||||||| || || || || |||||||| || ||||| || ||||| |||||||||
Sbjct: 330 gcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccgtatgtattg 271
Query: 98 aaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccatagttgaagtc 157
||||| |||||||| || ||||||||| || || | ||||| |||||||| |||
Sbjct: 270 aaaattcgggcaatccgaacctcaacatttgctcccctgtgataatccatagtcagagtt 211
Query: 158 tcggctgttctcttcccctcatcataacagctcctaacaccaataggattaacgtgcccc 217
|||||||||||||| ||||||||||| || || | || || || |||||||| | |||
Sbjct: 210 tcggctgttctcttaccctcatcatagcaactgcggactccgatgggattaacattgccc 151
Query: 218 cagtatgactccttctgtggatgctcaagtggatcaccataaacttcacttgtgctagtc 277
||||| | || | || ||||| ||||| ||||| |||||||||||||| || || ||
Sbjct: 150 cagtaagcttcagtttgaggatgttcaagaggatctccataaacttcactggtacttgta 91
Query: 278 aacaaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgaca 337
| |||||| | ||| ||||| ||||| || || || | ||| ||||| ||||||| |||
Sbjct: 90 agcaaaaagcgtgccccaacacgcttggcaagtccgagcatgttcaaggttcccacaaca 31
Query: 338 tttgtcttgatcgtctt 354
|| || ||||| |||||
Sbjct: 30 ttagttttgatagtctt 14
>gb|BQ696619.1|BQ696619 NXPV_043_C09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_043_C09 5' similar to Arabidopsis
thaliana sequence At2g47650 putative nucleotide-sugar
dehydratase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 508
Score = 89.7 bits (45), Expect = 2e-016
Identities = 249/317 (78%)
Strand = Plus / Minus
Query: 38 gcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatatgtattg 97
||||||||||| || || || || |||||||| || ||||| || ||||| |||||||||
Sbjct: 330 gcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccgtatgtattg 271
Query: 98 aaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccatagttgaagtc 157
||||| |||||||| || ||||||||| || || | ||||| |||||||| |||
Sbjct: 270 aaaattcgggcaatccgaacctcaacatttgctcccctgtgataatccatagtcagagtt 211
Query: 158 tcggctgttctcttcccctcatcataacagctcctaacaccaataggattaacgtgcccc 217
|||||||||||||| ||||||||||| || || | || || || |||||||| | |||
Sbjct: 210 tcggctgttctcttaccctcatcatagcaactgcggactccgatgggattaacattgccc 151
Query: 218 cagtatgactccttctgtggatgctcaagtggatcaccataaacttcacttgtgctagtc 277
||||| | || | || ||||| ||||| ||||| |||||||||||||| || || ||
Sbjct: 150 cagtaagcttcagtttgaggatgttcaagaggatctccataaacttcactggtacttgta 91
Query: 278 aacaaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgaca 337
| |||||| | ||| ||||| ||||| || || || | ||| ||||| ||||||| |||
Sbjct: 90 agcaaaaagcgtgccccaacacgcttggcaagtccgagcatgttcaaggttcccacaaca 31
Query: 338 tttgtcttgatcgtctt 354
|| || ||||| |||||
Sbjct: 30 ttagttttgatagtctt 14
>gb|AL750350.1|AL750350 AL750350 RN Pinus pinaster cDNA clone RN01E02 similar to
DTDP-GLUCOSE 4-6-DEHYDRATASE, mRNA sequence
Length = 377
Score = 85.7 bits (43), Expect = 3e-015
Identities = 145/179 (81%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| ||||| || || ||||| || ||||| | ||||| ||| |||||| |||
Sbjct: 258 tcatcatagcagcttcttactccaattgggttaacattaccccaatattcctccttttgt 199
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 198 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 139
Query: 296 actcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtctt 354
|||||||| || || |||||||||||||| || || || || |||||||| || |||||
Sbjct: 138 actcgcttggcaagccccaacatattcaatgtgccaatcacgtttgtctttattgtctt 80
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 80 cgaggaccatatgtattgaaaatgcgggcaat 111
||||||||||| ||||||||||| || |||||
Sbjct: 354 cgaggaccataagtattgaaaattcgagcaat 323
>gb|BX251375.1|BX251375 BX251375 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP048G12 similar to UDP GLUCOSE 4 EPIMERASE,
mRNA sequence
Length = 673
Score = 85.7 bits (43), Expect = 3e-015
Identities = 145/179 (81%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| ||||| || || ||||| || ||||| | ||||| ||| |||||| |||
Sbjct: 597 tcatcatagcagcttcttactccaattgggttaacattaccccaatattcctccttttgt 538
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 537 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 478
Query: 296 actcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtctt 354
|||||||| || || |||||||||||||| || || || || |||||||| || |||||
Sbjct: 477 actcgcttggcaagccccaacatattcaatgtgccaatcacgtttgtctttattgtctt 419
>gb|BX252587.1|BX252587 BX252587 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP066H03 similar to UDP GLUCOSE 4 EPIMERASE,
mRNA sequence
Length = 701
Score = 85.7 bits (43), Expect = 3e-015
Identities = 145/179 (81%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| ||||| || || ||||| || ||||| | ||||| ||| |||||| |||
Sbjct: 301 tcatcatagcagcttcttactccaattgggttaacattaccccaatattcctccttttgt 242
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 241 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 182
Query: 296 actcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtctt 354
|||||||| || || |||||||||||||| || || || || |||||||| || |||||
Sbjct: 181 actcgcttggcaagccccaacatattcaatgtgccaatcacgtttgtctttattgtctt 123
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 80 cgaggaccatatgtattgaaaatgcgggcaat 111
||||||||||| ||||||||||| || |||||
Sbjct: 397 cgaggaccataagtattgaaaattcgagcaat 366
>gb|BX254312.1|BX254312 BX254312 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP096F02 similar to UDP GLUCOSE 4 EPIMERASE,
mRNA sequence
Length = 647
Score = 85.7 bits (43), Expect = 3e-015
Identities = 145/179 (81%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| ||||| || || ||||| || ||||| | ||||| ||| |||||| |||
Sbjct: 596 tcatcatagcagcttcttactccaattgggttaacattaccccaatattcctccttttgt 537
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 536 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 477
Query: 296 actcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtctt 354
|||||||| || || |||||||||||||| || || || || |||||||| || |||||
Sbjct: 476 actcgcttggcaagccccaacatattcaatgtgccaatcacgtttgtctttattgtctt 418
>gb|BX254898.1|BX254898 BX254898 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP107A09 similar to UDP GLUCOSE 4 EPIMERASE,
mRNA sequence
Length = 672
Score = 85.7 bits (43), Expect = 3e-015
Identities = 145/179 (81%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| ||||| || || ||||| || ||||| | ||||| ||| |||||| |||
Sbjct: 596 tcatcatagcagcttcttactccaattgggttaacattaccccaatattcctccttttgt 537
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 536 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 477
Query: 296 actcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtctt 354
|||||||| || || |||||||||||||| || || || || |||||||| || |||||
Sbjct: 476 actcgcttggcaagccccaacatattcaatgtgccaatcacgtttgtctttattgtctt 418
>gb|DR691657.1|DR691657 EST1081744 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADB24 3' end, mRNA sequence
Length = 831
Score = 85.7 bits (43), Expect = 3e-015
Identities = 253/323 (78%)
Strand = Plus / Minus
Query: 32 gcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatat 91
||||| ||||||||||| || || || || |||||||| || ||||| || ||||| |||
Sbjct: 554 gcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccgtat 495
Query: 92 gtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccatagtt 151
||||||||||| || ||||| || ||||||||| || || | ||||| ||||||||
Sbjct: 494 gtattgaaaattcgagcaatccgaacctcaacatttgctcccctgtgataatccatagtc 435
Query: 152 gaagtctcggctgttctcttcccctcatcataacagctcctaacaccaataggattaacg 211
||| |||||||||||||| ||||||||||| || || | || || || ||||||||
Sbjct: 434 agagtttcggctgttctcttaccctcatcatagcaactgcggactccgatgggattaaca 375
Query: 212 tgcccccagtatgactccttctgtggatgctcaagtggatcaccataaacttcacttgtg 271
| |||||||| | || | || ||||| ||||| ||||| |||||||||||||| ||
Sbjct: 374 ttgccccagtaagcttcagtttgaggatgttcaagaggatctccataaacttcactggta 315
Query: 272 ctagtcaacaaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttccc 331
|| || | |||||| | ||| ||||| ||||| || || || | ||| ||||| ||||||
Sbjct: 314 cttgtaagcaaaaagcgtgccccaacacgcttggcaagtccgagcatgttcaaggttccc 255
Query: 332 atgacatttgtcttgatcgtctt 354
| ||||| || ||||| |||||
Sbjct: 254 acaacattagttttgatagtctt 232
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 491 ttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtc 537
||||||||||| || |||||||| |||||||| ||||| || |||||
Sbjct: 95 ttctccttccttcctgtgaagaaattgtcgacaacgataacactgtc 49
>gb|DT631983.1|DT631983 EST1146914 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFF10 3' end, mRNA sequence
Length = 817
Score = 85.7 bits (43), Expect = 3e-015
Identities = 253/323 (78%)
Strand = Plus / Minus
Query: 32 gcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatat 91
||||| ||||||||||| || || || || |||||||| || ||||| || ||||| |||
Sbjct: 622 gcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccgtat 563
Query: 92 gtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccatagtt 151
||||||||||| || ||||| || ||||||||| || || | ||||| ||||||||
Sbjct: 562 gtattgaaaattcgagcaatccgaacctcaacatttgctcccctgtgataatccatagtc 503
Query: 152 gaagtctcggctgttctcttcccctcatcataacagctcctaacaccaataggattaacg 211
||| |||||||||||||| ||||||||||| || || | || || || ||||||||
Sbjct: 502 agagtttcggctgttctcttaccctcatcatagcaactgcggactccgatgggattaaca 443
Query: 212 tgcccccagtatgactccttctgtggatgctcaagtggatcaccataaacttcacttgtg 271
| |||||||| | || | || ||||| ||||| ||||| |||||||||||||| ||
Sbjct: 442 ttgccccagtaagcttcagtttgaggatgttcaagaggatctccataaacttcactggta 383
Query: 272 ctagtcaacaaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttccc 331
|| || | |||||| | ||| ||||| ||||| || || || | ||| ||||| ||||||
Sbjct: 382 cttgtaagcaaaaagcgtgccccaacacgcttggcaagtccgagcatgttcaaggttccc 323
Query: 332 atgacatttgtcttgatcgtctt 354
| ||||| || ||||| |||||
Sbjct: 322 acaacattagttttgatagtctt 300
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 491 ttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtc 537
||||||||||| || |||||||| |||||||| ||||| || |||||
Sbjct: 163 ttctccttccttcctgtgaagaaattgtcgacaacgataacactgtc 117
>gb|AW290603.1|AW290603 NXNV044A08F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044A08 5', mRNA sequence
Length = 370
Score = 81.8 bits (41), Expect = 5e-014
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || || || || |||||||| ||||| | ||||| ||| |||||| |||
Sbjct: 154 tcatcatagcaacttcttactccaatagggttaacattaccccaatattcctccttttgt 95
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 94 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 35
Query: 296 actcgctttgccagacccaacatattcaa 324
|||||||| || || ||||||||||||||
Sbjct: 34 actcgcttggcaagtcccaacatattcaa 6
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 80 cgaggaccatatgtattgaaaatgcgggcaat 111
||||||||||| ||||||||||| || |||||
Sbjct: 250 cgaggaccataagtattgaaaattcgagcaat 219
>gb|BE209115.1|BE209115 NXNV_164_A09_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_164_A09 5' similar to Arabidopsis thaliana
sequence At3g46440 dTDP-glucose 4-6-dehydratases-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 597
Score = 81.8 bits (41), Expect = 5e-014
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || || || || |||||||| ||||| | ||||| ||| |||||| |||
Sbjct: 381 tcatcatagcaacttcttactccaatagggttaacattaccccaatattcctccttttgt 322
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 321 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 262
Query: 296 actcgctttgccagacccaacatattcaa 324
|||||||| || || ||||||||||||||
Sbjct: 261 actcgcttggcaagtcccaacatattcaa 233
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 80 cgaggaccatatgtattgaaaatgcgggcaat 111
||||||||||| ||||||||||| || |||||
Sbjct: 477 cgaggaccataagtattgaaaattcgagcaat 446
>gb|BE582468.1|BE582468 NXCI_033_G07_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_033_G07 5' similar to Arabidopsis
thaliana sequence At3g46440 dTDP-glucose
4-6-dehydratases-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 485
Score = 81.8 bits (41), Expect = 5e-014
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || || || || |||||||| ||||| | ||||| ||| |||||| |||
Sbjct: 337 tcatcatagcaacttcttactccaatagggttaacattaccccaatattcctccttttgt 278
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 277 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 218
Query: 296 actcgctttgccagacccaacatattcaa 324
|||||||| || || ||||||||||||||
Sbjct: 217 actcgcttggcaagtcccaacatattcaa 189
>gb|BF778456.1|BF778456 NXSI_085_A03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_085_A03 5' similar to Arabidopsis thaliana
sequence At3g46440 dTDP-glucose 4-6-dehydratases-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 415
Score = 81.8 bits (41), Expect = 5e-014
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || || || || |||||||| ||||| | ||||| ||| |||||| |||
Sbjct: 366 tcatcatagcaacttcttactccaatagggttaacattaccccaatattcctccttttgt 307
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 306 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 247
Query: 296 actcgctttgccagacccaacatattcaa 324
|||||||| || || ||||||||||||||
Sbjct: 246 actcgcttggcaagtcccaacatattcaa 218
>gb|CD027267.1|CD027267 NXNV044A08 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044A08 5' similar to Arabidopsis thaliana sequence
At2g28760 putative nucleotide-sugar dehydratase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 370
Score = 81.8 bits (41), Expect = 5e-014
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || || || || |||||||| ||||| | ||||| ||| |||||| |||
Sbjct: 154 tcatcatagcaacttcttactccaatagggttaacattaccccaatattcctccttttgt 95
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 94 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 35
Query: 296 actcgctttgccagacccaacatattcaa 324
|||||||| || || ||||||||||||||
Sbjct: 34 actcgcttggcaagtcccaacatattcaa 6
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 80 cgaggaccatatgtattgaaaatgcgggcaat 111
||||||||||| ||||||||||| || |||||
Sbjct: 250 cgaggaccataagtattgaaaattcgagcaat 219
>gb|CF389128.1|CF389128 RTDR2_13_D11.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_13_D11_A021 5', mRNA
sequence
Length = 679
Score = 81.8 bits (41), Expect = 5e-014
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || || || || |||||||| ||||| | ||||| ||| |||||| |||
Sbjct: 212 tcatcatagcaacttcttactccaatagggttaacattaccccaatattcctccttttgt 153
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 152 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 93
Query: 296 actcgctttgccagacccaacatattcaa 324
|||||||| || || ||||||||||||||
Sbjct: 92 actcgcttggcaagtcccaacatattcaa 64
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 80 cgaggaccatatgtattgaaaatgcgggcaat 111
||||||||||| ||||||||||| || |||||
Sbjct: 308 cgaggaccataagtattgaaaattcgagcaat 277
>gb|CO158722.1|CO158722 FLD1_8_G04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_8_G04_A029 5', mRNA sequence
Length = 704
Score = 81.8 bits (41), Expect = 5e-014
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || || || || |||||||| ||||| | ||||| ||| |||||| |||
Sbjct: 557 tcatcatagcaacttcttactccaatagggttaacattaccccaatattcctccttttgt 498
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 497 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 438
Query: 296 actcgctttgccagacccaacatattcaa 324
|||||||| || || ||||||||||||||
Sbjct: 437 actcgcttggcaagtcccaacatattcaa 409
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 80 cgaggaccatatgtattgaaaatgcgggcaat 111
||||||||||| ||||||||||| || |||||
Sbjct: 653 cgaggaccataagtattgaaaattcgagcaat 622
>gb|CO166181.1|CO166181 FLD1_59_H09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_59_H09_A029 5', mRNA sequence
Length = 812
Score = 81.8 bits (41), Expect = 5e-014
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || || || || |||||||| ||||| | ||||| ||| |||||| |||
Sbjct: 413 tcatcatagcaacttcttactccaatagggttaacattaccccaatattcctccttttgt 354
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 353 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 294
Query: 296 actcgctttgccagacccaacatattcaa 324
|||||||| || || ||||||||||||||
Sbjct: 293 actcgcttggcaagtcccaacatattcaa 265
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 80 cgaggaccatatgtattgaaaatgcgggcaat 111
||||||||||| ||||||||||| || |||||
Sbjct: 509 cgaggaccataagtattgaaaattcgagcaat 478
>gb|CO200454.1|CO200454 GEO2_7_C04.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_7_C04_A032 5', mRNA sequence
Length = 836
Score = 81.8 bits (41), Expect = 5e-014
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || || || || |||||||| ||||| | ||||| ||| |||||| |||
Sbjct: 563 tcatcatagcaacttcttactccaatagggttaacattaccccaatattcctccttttgt 504
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 503 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 444
Query: 296 actcgctttgccagacccaacatattcaa 324
|||||||| || || ||||||||||||||
Sbjct: 443 actcgcttggcaagtcccaacatattcaa 415
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 80 cgaggaccatatgtattgaaaatgcgggcaat 111
||||||||||| ||||||||||| || |||||
Sbjct: 659 cgaggaccataagtattgaaaattcgagcaat 628
>gb|CV032365.1|CV032365 RTNACL1_7_D03.g2_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_7_D03_A029 5', mRNA sequence
Length = 639
Score = 81.8 bits (41), Expect = 5e-014
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || || || || |||||||| ||||| | ||||| ||| |||||| |||
Sbjct: 599 tcatcatagcaacttcttactccaatagggttaacattaccccaatattcctccttttgt 540
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 539 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 480
Query: 296 actcgctttgccagacccaacatattcaa 324
|||||||| || || ||||||||||||||
Sbjct: 479 actcgcttggcaagtcccaacatattcaa 451
>gb|CX646143.1|CX646143 COLD1_7_C08.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_7_C08_A029 5', mRNA sequence
Length = 694
Score = 81.8 bits (41), Expect = 5e-014
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || || || || |||||||| ||||| | ||||| ||| |||||| |||
Sbjct: 584 tcatcatagcaacttcttactccaatagggttaacattaccccaatattcctccttttgt 525
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 524 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 465
Query: 296 actcgctttgccagacccaacatattcaa 324
|||||||| || || ||||||||||||||
Sbjct: 464 actcgcttggcaagtcccaacatattcaa 436
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 80 cgaggaccatatgtattgaaaatgcgggcaat 111
||||||||||| ||||||||||| || |||||
Sbjct: 680 cgaggaccataagtattgaaaattcgagcaat 649
>gb|CX650089.1|CX650089 COLD1_43_A08.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_43_A08_A029 5', mRNA sequence
Length = 784
Score = 81.8 bits (41), Expect = 5e-014
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || || || || |||||||| ||||| | ||||| ||| |||||| |||
Sbjct: 642 tcatcatagcaacttcttactccaatagggttaacattaccccaatattcctccttttgt 583
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 582 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 523
Query: 296 actcgctttgccagacccaacatattcaa 324
|||||||| || || ||||||||||||||
Sbjct: 522 actcgcttggcaagtcccaacatattcaa 494
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 80 cgaggaccatatgtattgaaaatgcgggcaat 111
||||||||||| ||||||||||| || |||||
Sbjct: 738 cgaggaccataagtattgaaaattcgagcaat 707
>gb|CX652868.1|CX652868 COLD1_62_B04.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_B04_A029 3', mRNA sequence
Length = 793
Score = 81.8 bits (41), Expect = 5e-014
Identities = 122/149 (81%)
Strand = Plus / Plus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || || || || |||||||| ||||| | ||||| ||| |||||| |||
Sbjct: 205 tcatcatagcaacttcttactccaatagggttaacattaccccaatattcctccttttgt 264
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 265 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 324
Query: 296 actcgctttgccagacccaacatattcaa 324
|||||||| || || ||||||||||||||
Sbjct: 325 actcgcttggcaagtcccaacatattcaa 353
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 80 cgaggaccatatgtattgaaaatgcgggcaat 111
||||||||||| ||||||||||| || |||||
Sbjct: 109 cgaggaccataagtattgaaaattcgagcaat 140
>gb|CX713895.1|CX713895 RTPQ1_14_D01.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_14_D01_A032 5', mRNA sequence
Length = 680
Score = 81.8 bits (41), Expect = 5e-014
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || || || || |||||||| ||||| | ||||| ||| |||||| |||
Sbjct: 575 tcatcatagcaacttcttactccaatagggttaacattaccccaatattcctccttttgt 516
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 515 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 456
Query: 296 actcgctttgccagacccaacatattcaa 324
|||||||| || || ||||||||||||||
Sbjct: 455 actcgcttggcaagtcccaacatattcaa 427
>gb|DR048707.1|DR048707 RTBOR1_10_E05.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_10_E05_A029 5', mRNA sequence
Length = 774
Score = 81.8 bits (41), Expect = 5e-014
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || || || || |||||||| ||||| | ||||| ||| |||||| |||
Sbjct: 381 tcatcatagcaacttcttactccaatagggttaacattaccccaatattcctccttttgt 322
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 321 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 262
Query: 296 actcgctttgccagacccaacatattcaa 324
|||||||| || || ||||||||||||||
Sbjct: 261 actcgcttggcaagtcccaacatattcaa 233
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 80 cgaggaccatatgtattgaaaatgcgggcaat 111
||||||||||| ||||||||||| || |||||
Sbjct: 477 cgaggaccataagtattgaaaattcgagcaat 446
>gb|DR061070.1|DR061070 RTNIT1_31_H03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_31_H03_A029 5', mRNA sequence
Length = 683
Score = 81.8 bits (41), Expect = 5e-014
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || || || || |||||||| ||||| | ||||| ||| |||||| |||
Sbjct: 188 tcatcatagcaacttcttactccaatagggttaacattaccccaatattcctccttttgt 129
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 128 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 69
Query: 296 actcgctttgccagacccaacatattcaa 324
|||||||| || || ||||||||||||||
Sbjct: 68 actcgcttggcaagtcccaacatattcaa 40
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 80 cgaggaccatatgtattgaaaatgcgggcaat 111
||||||||||| ||||||||||| || |||||
Sbjct: 284 cgaggaccataagtattgaaaattcgagcaat 253
>gb|DR069271.1|DR069271 RTDK1_6_C04.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_6_C04_A029 3', mRNA sequence
Length = 858
Score = 81.8 bits (41), Expect = 5e-014
Identities = 122/149 (81%)
Strand = Plus / Plus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || || || || |||||||| ||||| | ||||| ||| |||||| |||
Sbjct: 235 tcatcatagcaacttcttactccaatagggttaacattaccccaatattcctccttttgt 294
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 295 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 354
Query: 296 actcgctttgccagacccaacatattcaa 324
|||||||| || || ||||||||||||||
Sbjct: 355 actcgcttggcaagtcccaacatattcaa 383
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 80 cgaggaccatatgtattgaaaatgcgggcaat 111
||||||||||| ||||||||||| || |||||
Sbjct: 139 cgaggaccataagtattgaaaattcgagcaat 170
>gb|DR069574.1|DR069574 RTDK1_8_C04.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_8_C04_A029 3', mRNA sequence
Length = 912
Score = 81.8 bits (41), Expect = 5e-014
Identities = 122/149 (81%)
Strand = Plus / Plus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || || || || |||||||| ||||| | ||||| ||| |||||| |||
Sbjct: 278 tcatcatagcaacttcttactccaatagggttaacattaccccaatattcctccttttgt 337
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 338 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 397
Query: 296 actcgctttgccagacccaacatattcaa 324
|||||||| || || ||||||||||||||
Sbjct: 398 actcgcttggcaagtcccaacatattcaa 426
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 80 cgaggaccatatgtattgaaaatgcgggcaat 111
||||||||||| ||||||||||| || |||||
Sbjct: 182 cgaggaccataagtattgaaaattcgagcaat 213
>gb|DR079802.1|DR079802 RTFEPL1_17_F12.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_17_F12_A029 5', mRNA sequence
Length = 695
Score = 81.8 bits (41), Expect = 5e-014
Identities = 248/317 (78%)
Strand = Plus / Minus
Query: 38 gcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatatgtattg 97
||||||||||| || || || || |||||||| || ||||| || ||||| |||||||||
Sbjct: 694 gcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccgtatgtattg 635
Query: 98 aaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccatagttgaagtc 157
||||| || ||||| || ||||||||| || || | ||||| |||||||| |||
Sbjct: 634 aaaattcgagcaatccgaacctcaacatttgctcccctgtgataatccatagtcagagtt 575
Query: 158 tcggctgttctcttcccctcatcataacagctcctaacaccaataggattaacgtgcccc 217
|||||||||||||| ||||||||||| || || | || || || |||||||| | |||
Sbjct: 574 tcggctgttctcttaccctcatcatagcaactgcggactccgatgggattaacattgccc 515
Query: 218 cagtatgactccttctgtggatgctcaagtggatcaccataaacttcacttgtgctagtc 277
||||| | || | || ||||| ||||| ||||| |||||||||||||| || || ||
Sbjct: 514 cagtaagcttcagtttgaggatgttcaagaggatctccataaacttcactggtacttgta 455
Query: 278 aacaaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatgaca 337
| |||||| | ||| ||||| ||||| || || || | ||| ||||| ||||||| |||
Sbjct: 454 agcaaaaagcgtgccccaacacgcttggcaagtccgagcatgttcaaggttcccacaaca 395
Query: 338 tttgtcttgatcgtctt 354
|| || ||||| |||||
Sbjct: 394 ttagttttgatagtctt 378
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 491 ttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtc 537
||||||||||| || |||||||| |||||||| ||||| || |||||
Sbjct: 241 ttctccttccttcctgtgaagaaattgtcgacaacgataacactgtc 195
>gb|DR094453.1|DR094453 STRR1_14_E02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_14_E02_A033 5', mRNA sequence
Length = 862
Score = 81.8 bits (41), Expect = 5e-014
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || || || || |||||||| ||||| | ||||| ||| |||||| |||
Sbjct: 519 tcatcatagcaacttcttactccaatagggttaacattaccccaatattcctccttttgt 460
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| || |||||||| |||||| ||| |||||||||| |||||||||
Sbjct: 459 ggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaattcttgcacca 400
Query: 296 actcgctttgccagacccaacatattcaa 324
|||||||| || || ||||||||||||||
Sbjct: 399 actcgcttggcaagtcccaacatattcaa 371
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 80 cgaggaccatatgtattgaaaatgcgggcaat 111
||||||||||| ||||||||||| || |||||
Sbjct: 615 cgaggaccataagtattgaaaattcgagcaat 584
>gb|BX254051.1|BX254051 BX254051 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP092F08 similar to DTDP GLUCOSE 4,6
DEHYDRATASE, mRNA sequence
Length = 692
Score = 79.8 bits (40), Expect = 2e-013
Identities = 124/152 (81%)
Strand = Plus / Minus
Query: 32 gcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatat 91
||||| ||||||||||| || || || || |||||||| || ||||| || ||||| |||
Sbjct: 325 gcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccgtat 266
Query: 92 gtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccatagtt 151
||||||||||| || ||||| || ||||||||| || || | ||||| ||||||||
Sbjct: 265 gtattgaaaattcgagcaatccgaacctcaacatttgctcccctgtgataatccatagtc 206
Query: 152 gaagtctcggctgttctcttcccctcatcata 183
||| |||||||||||||| |||||||||||
Sbjct: 205 agagtttcggctgttctcttaccctcatcata 174
>gb|BX255353.1|BX255353 BX255353 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP004G08 similar to DTDP GLUCOSE 4,6
DEHYDRATASE, mRNA sequence
Length = 495
Score = 79.8 bits (40), Expect = 2e-013
Identities = 124/152 (81%)
Strand = Plus / Minus
Query: 32 gcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatat 91
||||| ||||||||||| || || || || |||||||| || ||||| || ||||| |||
Sbjct: 234 gcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccgtat 175
Query: 92 gtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccatagtt 151
||||||||||| || ||||| || ||||||||| || || | ||||| ||||||||
Sbjct: 174 gtattgaaaattcgagcaatccgaacctcaacatttgctcccctgtgataatccatagtc 115
Query: 152 gaagtctcggctgttctcttcccctcatcata 183
||| |||||||||||||| |||||||||||
Sbjct: 114 agagtttcggctgttctcttaccctcatcata 83
>gb|BQ700846.1|BQ700846 NXRV112_B12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV112_B12 5' similar to Arabidopsis thaliana
sequence At2g47650 putative nucleotide-sugar dehydratase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 477
Score = 79.8 bits (40), Expect = 2e-013
Identities = 187/236 (79%)
Strand = Plus / Minus
Query: 32 gcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatat 91
||||| ||||||||||| || || || || |||||||| || ||||| || ||||| |||
Sbjct: 293 gcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccgtat 234
Query: 92 gtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccatagtt 151
||||||||||| || ||||| || ||||||||| || || | ||||| ||||||||
Sbjct: 233 gtattgaaaattcgagcaatccgaacctcaacatttgctcccctgtgataatccatagtc 174
Query: 152 gaagtctcggctgttctcttcccctcatcataacagctcctaacaccaataggattaacg 211
||| |||||||||||||| ||||||||||| || || | || || || ||||||||
Sbjct: 173 agagtttcggctgttctcttaccctcatcatagcaactgcggactccgatgggattaaca 114
Query: 212 tgcccccagtatgactccttctgtggatgctcaagtggatcaccataaacttcact 267
| |||||||| | || | || ||||| ||||| ||||| ||||||||||||||
Sbjct: 113 ttgccccagtaagcttcagtttgaggatgttcaagaggatctccataaacttcact 58
>gb|CF479544.1|CF479544 RTWW3_22_G10.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_22_G10_A022 5', mRNA sequence
Length = 716
Score = 79.8 bits (40), Expect = 2e-013
Identities = 187/236 (79%)
Strand = Plus / Minus
Query: 32 gcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatat 91
||||| ||||||||||| || || || || |||||||| || ||||| || ||||| |||
Sbjct: 294 gcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccgtat 235
Query: 92 gtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccatagtt 151
||||||||||| || ||||| || ||||||||| || || | ||||| ||||||||
Sbjct: 234 gtattgaaaattcgagcaatccgaacctcaacatttgctcccctgtgataatccatagtc 175
Query: 152 gaagtctcggctgttctcttcccctcatcataacagctcctaacaccaataggattaacg 211
||| |||||||||||||| ||||||||||| || || | || || || ||||||||
Sbjct: 174 agagtttcggctgttctcttaccctcatcatagcaactgcggactccgatgggattaaca 115
Query: 212 tgcccccagtatgactccttctgtggatgctcaagtggatcaccataaacttcact 267
| |||||||| | || | || ||||| ||||| ||||| ||||||||||||||
Sbjct: 114 ttgccccagtaagcttcagtttgaggatgttcaagaggatctccataaacttcact 59
>gb|DR092788.1|DR092788 STRR1_4_A12.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_4_A12_A033 3', mRNA sequence
Length = 898
Score = 79.8 bits (40), Expect = 2e-013
Identities = 187/236 (79%)
Strand = Plus / Plus
Query: 32 gcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatat 91
||||| ||||||||||| || || || || |||||||| || ||||| || ||||| |||
Sbjct: 643 gcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccgtat 702
Query: 92 gtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccatagtt 151
||||||||||| || ||||| || ||||||||| || || | ||||| ||||||||
Sbjct: 703 gtattgaaaattcgagcaatccgaacctcaacatttgctcccctgtgataatccatagtc 762
Query: 152 gaagtctcggctgttctcttcccctcatcataacagctcctaacaccaataggattaacg 211
||| |||||||||||||| ||||||||||| || || | || || || ||||||||
Sbjct: 763 agagtttcggctgttctcttaccctcatcatagcaactgcggactccgatgggattaaca 822
Query: 212 tgcccccagtatgactccttctgtggatgctcaagtggatcaccataaacttcact 267
| |||||||| | || | || ||||| ||||| ||||| ||||||||||||||
Sbjct: 823 ttgccccagtaagcttcagtttgaggatgttcaagaggatctccataaacttcact 878
>gb|DR092855.1|DR092855 STRR1_4_A12.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_4_A12_A033 5', mRNA sequence
Length = 885
Score = 79.8 bits (40), Expect = 2e-013
Identities = 124/152 (81%)
Strand = Plus / Plus
Query: 32 gcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatat 91
||||| ||||||||||| || || || || |||||||| || ||||| || ||||| |||
Sbjct: 726 gcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccgtat 785
Query: 92 gtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccatagtt 151
||||||||||| || ||||| || ||||||||| || || | ||||| ||||||||
Sbjct: 786 gtattgaaaattcgagcaatccgaacctcaacatttgctcccctgtgataatccatagtc 845
Query: 152 gaagtctcggctgttctcttcccctcatcata 183
||| |||||||||||||| |||||||||||
Sbjct: 846 agagtttcggctgttctcttaccctcatcata 877
>gb|DR100307.1|DR100307 STRR1_63_E02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_63_E02_A033 3', mRNA sequence
Length = 830
Score = 79.8 bits (40), Expect = 2e-013
Identities = 124/152 (81%)
Strand = Plus / Minus
Query: 32 gcctgtgcaacaaaattgctgaccacgcggccatcatcgagacacatacgaggaccatat 91
||||| ||||||||||| || || || || |||||||| || ||||| || ||||| |||
Sbjct: 188 gcctgagcaacaaaattacttacaacccgaccatcatcaaggcacattcgcggaccgtat 129
Query: 92 gtattgaaaatgcgggcaatacgcacctcaacaccagcaccacgatgatagtccatagtt 151
||||||||||| || ||||| || ||||||||| || || | ||||| ||||||||
Sbjct: 128 gtattgaaaattcgagcaatccgaacctcaacatttgctcccctgtgataatccatagtc 69
Query: 152 gaagtctcggctgttctcttcccctcatcata 183
||| |||||||||||||| |||||||||||
Sbjct: 68 agagtttcggctgttctcttaccctcatcata 37
>gb|BE209359.1|BE209359 NXNV_166_G11_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_166_G11 5' similar to Arabidopsis thaliana
sequence At3g46440 dTDP-glucose 4-6-dehydratases-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 312
Score = 77.8 bits (39), Expect = 7e-013
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 226 ctccttctgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaa 285
|||||| |||||||||||||| || |||||||| |||||| ||| ||||||||||
Sbjct: 247 ctccttttgtggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaat 188
Query: 286 ccttgcaccaactcgctttgccagacccaacatattcaa 324
||||||||||||||||| || || ||||||||||||||
Sbjct: 187 tcttgcaccaactcgcttggcaagtcccaacatattcaa 149
>gb|BQ695460.1|BQ695460 NXPV_028_G04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_028_G04 5' similar to Arabidopsis
thaliana sequence At3g46440 dTDP-glucose
4-6-dehydratases-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 453
Score = 77.8 bits (39), Expect = 7e-013
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 226 ctccttctgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaa 285
|||||| |||||||||||||| || |||||||| |||||| ||| ||||||||||
Sbjct: 306 ctccttttgtggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaat 247
Query: 286 ccttgcaccaactcgctttgccagacccaacatattcaa 324
||||||||||||||||| || || ||||||||||||||
Sbjct: 246 tcttgcaccaactcgcttggcaagtcccaacatattcaa 208
>gb|BQ699855.1|BQ699855 NXRV122_E03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV122_E03 5' similar to Arabidopsis thaliana
sequence At2g28760 putative nucleotide-sugar dehydratase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 661
Score = 77.8 bits (39), Expect = 7e-013
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 226 ctccttctgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaa 285
|||||| |||||||||||||| || |||||||| |||||| ||| ||||||||||
Sbjct: 551 ctccttttgtggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaat 492
Query: 286 ccttgcaccaactcgctttgccagacccaacatattcaa 324
||||||||||||||||| || || ||||||||||||||
Sbjct: 491 tcttgcaccaactcgcttggcaagtcccaacatattcaa 453
>gb|BQ701694.1|BQ701694 NXSI_118_E04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_118_E04 5' similar to Arabidopsis thaliana
sequence At2g28760 putative nucleotide-sugar dehydratase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 547
Score = 77.8 bits (39), Expect = 7e-013
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 226 ctccttctgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaa 285
|||||| |||||||||||||| || |||||||| |||||| ||| ||||||||||
Sbjct: 530 ctccttttgtggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaat 471
Query: 286 ccttgcaccaactcgctttgccagacccaacatattcaa 324
||||||||||||||||| || || ||||||||||||||
Sbjct: 470 tcttgcaccaactcgcttggcaagtcccaacatattcaa 432
>gb|BQ702273.1|BQ702273 NXSI_126_H01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_126_H01 5' similar to Arabidopsis thaliana
sequence At2g28760 putative nucleotide-sugar dehydratase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 543
Score = 77.8 bits (39), Expect = 7e-013
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 226 ctccttctgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaa 285
|||||| |||||||||||||| || |||||||| |||||| ||| ||||||||||
Sbjct: 506 ctccttttgtggatgctcaagagggtcaccatagacttcagatgttgaggtcaacaaaat 447
Query: 286 ccttgcaccaactcgctttgccagacccaacatattcaa 324
||||||||||||||||| || || ||||||||||||||
Sbjct: 446 tcttgcaccaactcgcttggcaagtcccaacatattcaa 408
>gb|BE582441.1|BE582441 NXCI_033_D07_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_033_D07 5' similar to Arabidopsis
thaliana sequence At3g46440 dTDP-glucose
4-6-dehydratases-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 363
Score = 75.8 bits (38), Expect = 3e-012
Identities = 105/128 (82%)
Strand = Plus / Minus
Query: 197 ccaataggattaacgtgcccccagtatgactccttctgtggatgctcaagtggatcacca 256
|||||||| ||||| | ||||| ||| |||||| |||||||||||||| || ||||||
Sbjct: 315 ccaatagggttaacattaccccaatattcctccttttgtggatgctcaagagggtcacca 256
Query: 257 taaacttcacttgtgctagtcaacaaaaaccttgcaccaactcgctttgccagacccaac 316
|| |||||| ||| |||||||||| |||||||||||||||| || || ||||||
Sbjct: 255 tagacttcagatgttgaggtcaacaaaattcttgcaccaactcgctnngcaagtcccaac 196
Query: 317 atattcaa 324
||||||||
Sbjct: 195 atattcaa 188
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 96,029
Number of Sequences: 355925
Number of extensions: 96029
Number of successful extensions: 24406
Number of sequences better than 0.5: 119
Number of HSP's better than 0.5 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24109
Number of HSP's gapped (non-prelim): 243
length of query: 950
length of database: 217,277,237
effective HSP length: 19
effective length of query: 931
effective length of database: 210,514,662
effective search space: 195989150322
effective search space used: 195989150322
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)