BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3838122.2.1
         (1865 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CF471187.1|CF471187  RTDS1_2_E11.b1_A015 Drought-stressed...    40   0.32 
gb|DR013275.1|DR013275  HEAT1_18_G04.b1_A029 Root at 37 C fo...    40   0.32 

>gb|CF471187.1|CF471187 RTDS1_2_E11.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
           taeda cDNA clone RTDS1_2_E11_A015 3', mRNA sequence
          Length = 708

 Score = 40.1 bits (20), Expect = 0.32
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 669 ggagccgtccaggcccttggccacgtag 696
           |||||||| |||||||||||| ||||||
Sbjct: 367 ggagccgtacaggcccttggcgacgtag 340



>gb|DR013275.1|DR013275 HEAT1_18_G04.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
           HEAT1_18_G04_A029 3', mRNA sequence
          Length = 806

 Score = 40.1 bits (20), Expect = 0.32
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 915 gtagtcgatggtgatgccgc 934
           ||||||||||||||||||||
Sbjct: 506 gtagtcgatggtgatgccgc 487



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 157,411
Number of Sequences: 355925
Number of extensions: 157411
Number of successful extensions: 39298
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39296
Number of HSP's gapped (non-prelim): 2
length of query: 1865
length of database: 217,277,237
effective HSP length: 20
effective length of query: 1845
effective length of database: 210,158,737
effective search space: 387742869765
effective search space used: 387742869765
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)