BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829406.2.1
(673 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM133817.1|BM133817 NXLV_012_F08_F NXLV (Nsf Xylem Late ... 38 0.45
gb|CF663810.1|CF663810 RTCNT1_5_F08.b1_A029 Root control Pi... 38 0.45
gb|CF664053.1|CF664053 RTCNT1_7_B03.b1_A029 Root control Pi... 38 0.45
gb|CF664652.1|CF664652 RTCNT1_11_E01.b1_A029 Root control P... 38 0.45
gb|CF669011.1|CF669011 RTCNT1_40_B10.b1_A029 Root control P... 38 0.45
gb|CF669014.1|CF669014 RTCNT1_40_C04.b1_A029 Root control P... 38 0.45
gb|CF669081.1|CF669081 RTCNT1_40_B10.g1_A029 Root control P... 38 0.45
gb|CF671827.1|CF671827 RTCNT1_59_B12.g1_A029 Root control P... 38 0.45
gb|CF672067.1|CF672067 RTCNT1_61_D04.b1_A029 Root control P... 38 0.45
gb|CF672138.1|CF672138 RTCNT1_61_D04.g1_A029 Root control P... 38 0.45
gb|BX678353.1|BX678353 BX678353 RS Pinus pinaster cDNA clon... 38 0.45
gb|CR393139.1|CR393139 CR393139 RN Pinus pinaster cDNA clon... 38 0.45
gb|CR393611.1|CR393611 CR393611 RN Pinus pinaster cDNA clon... 38 0.45
gb|CO175071.1|CO175071 NDL1_48_E01.b1_A029 Needles control ... 38 0.45
gb|CO175136.1|CO175136 NDL1_48_E01.g1_A029 Needles control ... 38 0.45
gb|CO197463.1|CO197463 GEO1_6_C10.g1_A029 Root gravitropism... 38 0.45
gb|CO198657.1|CO198657 GEO1_15_B02.g1_A029 Root gravitropis... 38 0.45
gb|CO200900.1|CO200900 RTCNT2_2_G05.b1_A029 Root control 2 ... 38 0.45
gb|CO200910.1|CO200910 RTCNT2_2_H05.b1_A029 Root control 2 ... 38 0.45
gb|CO200987.1|CO200987 RTCNT2_2_H05.g1_A029 Root control 2 ... 38 0.45
gb|CO201503.1|CO201503 RTCNT2_6_E07.b1_A029 Root control 2 ... 38 0.45
gb|CO201575.1|CO201575 RTCNT2_6_E07.g1_A029 Root control 2 ... 38 0.45
gb|CO362680.1|CO362680 RTK1_5_E01.b1_A029 Roots minus potas... 38 0.45
gb|CO362768.1|CO362768 RTK1_5_E01.g1_A029 Roots minus potas... 38 0.45
gb|CO363474.1|CO363474 RTK1_10_A04.b1_A029 Roots minus pota... 38 0.45
gb|CO363550.1|CO363550 RTK1_10_A04.g1_A029 Roots minus pota... 38 0.45
gb|CO364675.1|CO364675 RTK1_21_D01.b1_A029 Roots minus pota... 38 0.45
gb|CO364690.1|CO364690 RTK1_21_E11.b1_A029 Roots minus pota... 38 0.45
gb|CO364775.1|CO364775 RTK1_21_E11.g1_A029 Roots minus pota... 38 0.45
gb|CO365022.1|CO365022 RTK1_23_E03.b1_A029 Roots minus pota... 38 0.45
gb|CO365105.1|CO365105 RTK1_23_E03.g1_A029 Roots minus pota... 38 0.45
gb|CO365186.1|CO365186 RTK1_24_E02.b1_A029 Roots minus pota... 38 0.45
gb|CO365269.1|CO365269 RTK1_24_E02.g1_A029 Roots minus pota... 38 0.45
gb|CO365811.1|CO365811 RTK1_19_H06.b1_A029 Roots minus pota... 38 0.45
gb|CO365896.1|CO365896 RTK1_19_H06.g1_A029 Roots minus pota... 38 0.45
gb|CO366315.1|CO366315 RTK1_27_D05.b1_A029 Roots minus pota... 38 0.45
gb|CO366398.1|CO366398 RTK1_27_D05.g1_A029 Roots minus pota... 38 0.45
gb|CO367583.1|CO367583 RTK1_35_E12.b1_A029 Roots minus pota... 38 0.45
gb|CO367660.1|CO367660 RTK1_35_E12.g1_A029 Roots minus pota... 38 0.45
gb|CO367723.1|CO367723 RTK1_36_D01.b1_A029 Roots minus pota... 38 0.45
gb|CO367784.1|CO367784 RTK1_36_D01.g1_A029 Roots minus pota... 38 0.45
gb|CO368513.1|CO368513 RTK1_41_C10.b1_A029 Roots minus pota... 38 0.45
gb|CO368592.1|CO368592 RTK1_41_C10.g1_A029 Roots minus pota... 38 0.45
gb|CX648438.1|CX648438 COLD1_28_D12.g1_A029 Root cold Pinus... 38 0.45
gb|DR011661.1|DR011661 HEAT1_7_C12.b1_A029 Root at 37 C for... 38 0.45
gb|DR050398.1|DR050398 RTBOR1_23_E12.b1_A029 Roots plus add... 38 0.45
gb|DR050472.1|DR050472 RTBOR1_23_E12.g1_A029 Roots plus add... 38 0.45
gb|DR051881.1|DR051881 RTCA1_1_B09.b1_A029 Roots minus calc... 38 0.45
gb|DR052610.1|DR052610 RTCA1_5_E11.g1_A029 Roots minus calc... 38 0.45
gb|DR052839.1|DR052839 RTCA1_7_E11.b1_A029 Roots minus calc... 38 0.45
gb|DR052919.1|DR052919 RTCA1_7_E11.g1_A029 Roots minus calc... 38 0.45
gb|DR053116.1|DR053116 RTCA1_9_C12.b1_A029 Roots minus calc... 38 0.45
gb|DR111277.1|DR111277 RTS1_16_C12.g1_A029 Roots minus sulf... 38 0.45
gb|DR120347.1|DR120347 RTMG1_29_C11.b1_A029 Roots minus mag... 38 0.45
gb|DR120421.1|DR120421 RTMG1_29_C11.g1_A029 Roots minus mag... 38 0.45
gb|DR120714.1|DR120714 RTMG1_31_A11.g1_A029 Roots minus mag... 38 0.45
gb|DR165417.1|DR165417 RTPHOS1_5_A03.b1_A029 Roots minus ph... 38 0.45
gb|DR165491.1|DR165491 RTPHOS1_5_A03.g1_A029 Roots minus ph... 38 0.45
gb|DR165596.1|DR165596 RTPHOS1_6_D01.b1_A029 Roots minus ph... 38 0.45
gb|DR165671.1|DR165671 RTPHOS1_6_D01.g1_A029 Roots minus ph... 38 0.45
gb|DR166958.1|DR166958 RTPHOS1_15_E09.g1_A029 Roots minus p... 38 0.45
gb|DR167011.1|DR167011 RTPHOS1_16_B07.b1_A029 Roots minus p... 38 0.45
gb|DR177435.1|DR177435 RTMNUT1_5_G08.b1_A029 Roots minus mi... 38 0.45
gb|DR177528.1|DR177528 RTMNUT1_5_G08.g1_A029 Roots minus mi... 38 0.45
gb|DR177627.1|DR177627 RTMNUT1_6_A08.g1_A029 Roots minus mi... 38 0.45
gb|DR180035.1|DR180035 RTMNUT1_26_C09.b1_A029 Roots minus m... 38 0.45
gb|DR180082.1|DR180082 RTMNUT1_26_H02.b1_A029 Roots minus m... 38 0.45
gb|DR180163.1|DR180163 RTMNUT1_26_H02.g1_A029 Roots minus m... 38 0.45
gb|DR180190.1|DR180190 RTMNUT1_27_B11.b1_A029 Roots minus m... 38 0.45
gb|DR743199.1|DR743199 RTCU1_14_F02.b1_A029 Roots plus adde... 38 0.45
>gb|BM133817.1|BM133817 NXLV_012_F08_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_012_F08 5' similar to Arabidopsis thaliana
sequence At4g27670 heat shock protein 21 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 382
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 75 gcgcttggggatggtgatg 57
>gb|CF663810.1|CF663810 RTCNT1_5_F08.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_5_F08_A029 3', mRNA sequence
Length = 739
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 541 gcgcttggggatggtgatg 523
>gb|CF664053.1|CF664053 RTCNT1_7_B03.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_7_B03_A029 3', mRNA sequence
Length = 585
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 386 gcgcttggggatggtgatg 368
>gb|CF664652.1|CF664652 RTCNT1_11_E01.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_11_E01_A029 3', mRNA sequence
Length = 613
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 309 gcgcttggggatggtgatg 291
>gb|CF669011.1|CF669011 RTCNT1_40_B10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_40_B10_A029 3', mRNA sequence
Length = 815
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 447 gcgcttggggatggtgatg 429
>gb|CF669014.1|CF669014 RTCNT1_40_C04.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_40_C04_A029 3', mRNA sequence
Length = 616
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 309 gcgcttggggatggtgatg 291
>gb|CF669081.1|CF669081 RTCNT1_40_B10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_40_B10_A029 5', mRNA sequence
Length = 813
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 536 gcgcttggggatggtgatg 518
>gb|CF671827.1|CF671827 RTCNT1_59_B12.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_59_B12_A029 5', mRNA sequence
Length = 756
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 213 gcgcttggggatggtgatg 231
>gb|CF672067.1|CF672067 RTCNT1_61_D04.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_61_D04_A029 3', mRNA sequence
Length = 735
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 515 gcgcttggggatggtgatg 497
>gb|CF672138.1|CF672138 RTCNT1_61_D04.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_61_D04_A029 5', mRNA sequence
Length = 739
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 736 gcgcttggggatggtgatg 718
>gb|BX678353.1|BX678353 BX678353 RS Pinus pinaster cDNA clone RS08A05, mRNA sequence
Length = 577
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 349 gttgcagcgcttggggatggtgatggc 375
|||||||||||| || |||||||||||
Sbjct: 352 gttgcagcgcttaggaatggtgatggc 326
>gb|CR393139.1|CR393139 CR393139 RN Pinus pinaster cDNA clone RN53B02, mRNA sequence
Length = 507
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 349 gttgcagcgcttggggatggtgatggc 375
|||||||||||| || |||||||||||
Sbjct: 351 gttgcagcgcttaggaatggtgatggc 325
>gb|CR393611.1|CR393611 CR393611 RN Pinus pinaster cDNA clone RN62E03, mRNA sequence
Length = 590
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 349 gttgcagcgcttggggatggtgatggc 375
|||||||||||| || |||||||||||
Sbjct: 371 gttgcagcgcttaggaatggtgatggc 345
>gb|CO175071.1|CO175071 NDL1_48_E01.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_48_E01_A029 3', mRNA sequence
Length = 352
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 45 gcgcttggggatggtgatg 27
>gb|CO175136.1|CO175136 NDL1_48_E01.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_48_E01_A029 5', mRNA sequence
Length = 659
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 518 gcgcttggggatggtgatg 500
>gb|CO197463.1|CO197463 GEO1_6_C10.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_6_C10_A029 5', mRNA sequence
Length = 751
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 347 gcgcttggggatggtgatg 365
>gb|CO198657.1|CO198657 GEO1_15_B02.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_15_B02_A029 5', mRNA sequence
Length = 532
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 228 gcgcttggggatggtgatg 246
>gb|CO200900.1|CO200900 RTCNT2_2_G05.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_2_G05_A029 3', mRNA sequence
Length = 533
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 232 gcgcttggggatggtgatg 214
>gb|CO200910.1|CO200910 RTCNT2_2_H05.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_2_H05_A029 3', mRNA sequence
Length = 833
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 470 gcgcttggggatggtgatg 452
>gb|CO200987.1|CO200987 RTCNT2_2_H05.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_2_H05_A029 5', mRNA sequence
Length = 734
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 717 gcgcttggggatggtgatg 699
>gb|CO201503.1|CO201503 RTCNT2_6_E07.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_6_E07_A029 3', mRNA sequence
Length = 846
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 541 gcgcttggggatggtgatg 523
>gb|CO201575.1|CO201575 RTCNT2_6_E07.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_6_E07_A029 5', mRNA sequence
Length = 841
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 711 gcgcttggggatggtgatg 693
>gb|CO362680.1|CO362680 RTK1_5_E01.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_5_E01_A029 3', mRNA sequence
Length = 608
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 309 gcgcttggggatggtgatg 291
>gb|CO362768.1|CO362768 RTK1_5_E01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_5_E01_A029 5', mRNA sequence
Length = 827
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 756 gcgcttggggatggtgatg 738
>gb|CO363474.1|CO363474 RTK1_10_A04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_10_A04_A029 3', mRNA sequence
Length = 831
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 545 gcgcttggggatggtgatg 527
>gb|CO363550.1|CO363550 RTK1_10_A04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_10_A04_A029 5', mRNA sequence
Length = 808
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 761 gcgcttggggatggtgatg 743
>gb|CO364675.1|CO364675 RTK1_21_D01.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_21_D01_A029 3', mRNA sequence
Length = 842
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 70 gcgcttggggatggtgatg 88
>gb|CO364690.1|CO364690 RTK1_21_E11.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_21_E11_A029 3', mRNA sequence
Length = 889
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 136 gcgcttggggatggtgatg 154
>gb|CO364775.1|CO364775 RTK1_21_E11.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_21_E11_A029 5', mRNA sequence
Length = 841
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 185 gcgcttggggatggtgatg 203
>gb|CO365022.1|CO365022 RTK1_23_E03.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_23_E03_A029 3', mRNA sequence
Length = 734
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 129 gcgcttggggatggtgatg 147
>gb|CO365105.1|CO365105 RTK1_23_E03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_23_E03_A029 5', mRNA sequence
Length = 818
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 305 gcgcttggggatggtgatg 323
>gb|CO365186.1|CO365186 RTK1_24_E02.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_24_E02_A029 3', mRNA sequence
Length = 873
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 264 gcgcttggggatggtgatg 282
>gb|CO365269.1|CO365269 RTK1_24_E02.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_24_E02_A029 5', mRNA sequence
Length = 852
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 314 gcgcttggggatggtgatg 332
>gb|CO365811.1|CO365811 RTK1_19_H06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_19_H06_A029 3', mRNA sequence
Length = 863
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 102 gcgcttggggatggtgatg 120
>gb|CO365896.1|CO365896 RTK1_19_H06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_19_H06_A029 5', mRNA sequence
Length = 833
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 298 gcgcttggggatggtgatg 316
>gb|CO366315.1|CO366315 RTK1_27_D05.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_D05_A029 3', mRNA sequence
Length = 799
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 518 gcgcttggggatggtgatg 500
>gb|CO366398.1|CO366398 RTK1_27_D05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_D05_A029 5', mRNA sequence
Length = 804
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 748 gcgcttggggatggtgatg 730
>gb|CO367583.1|CO367583 RTK1_35_E12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_35_E12_A029 3', mRNA sequence
Length = 764
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 398 gcgcttggggatggtgatg 380
>gb|CO367660.1|CO367660 RTK1_35_E12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_35_E12_A029 5', mRNA sequence
Length = 799
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 438 gcgcttggggatggtgatg 420
>gb|CO367723.1|CO367723 RTK1_36_D01.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_36_D01_A029 3', mRNA sequence
Length = 834
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 69 gcgcttggggatggtgatg 87
>gb|CO367784.1|CO367784 RTK1_36_D01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_36_D01_A029 5', mRNA sequence
Length = 844
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 327 gcgcttggggatggtgatg 345
>gb|CO368513.1|CO368513 RTK1_41_C10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_41_C10_A029 3', mRNA sequence
Length = 884
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 137 gcgcttggggatggtgatg 155
>gb|CO368592.1|CO368592 RTK1_41_C10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_41_C10_A029 5', mRNA sequence
Length = 821
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 273 gcgcttggggatggtgatg 291
>gb|CX648438.1|CX648438 COLD1_28_D12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_D12_A029 5', mRNA sequence
Length = 840
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 349 gttgcagcgcttggggatggtgatggc 375
|||||||||||| || |||||||||||
Sbjct: 429 gttgcagcgcttaggaatggtgatggc 455
>gb|DR011661.1|DR011661 HEAT1_7_C12.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_7_C12_A029 3', mRNA sequence
Length = 734
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 550 gcgcttggggatggtgatg 532
>gb|DR050398.1|DR050398 RTBOR1_23_E12.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_23_E12_A029 3', mRNA sequence
Length = 815
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 451 gcgcttggggatggtgatg 433
>gb|DR050472.1|DR050472 RTBOR1_23_E12.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_23_E12_A029 5', mRNA sequence
Length = 783
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 718 gcgcttggggatggtgatg 700
>gb|DR051881.1|DR051881 RTCA1_1_B09.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_1_B09_A029 3', mRNA sequence
Length = 870
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 109 gcgcttggggatggtgatg 127
>gb|DR052610.1|DR052610 RTCA1_5_E11.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_5_E11_A029 5', mRNA sequence
Length = 867
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 759 gcgcttggggatggtgatg 741
>gb|DR052839.1|DR052839 RTCA1_7_E11.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_7_E11_A029 3', mRNA sequence
Length = 848
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 355 gcgcttggggatggtgatg 373
|||||||||||||||||||
Sbjct: 540 gcgcttggggatggtgatg 522
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 58,051
Number of Sequences: 355925
Number of extensions: 58051
Number of successful extensions: 16801
Number of sequences better than 0.5: 70
Number of HSP's better than 0.5 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16731
Number of HSP's gapped (non-prelim): 70
length of query: 673
length of database: 217,277,237
effective HSP length: 19
effective length of query: 654
effective length of database: 210,514,662
effective search space: 137676588948
effective search space used: 137676588948
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)