BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3748394.2.2
         (3527 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BD236454.1|  Materials and method for modification of pl...    86   1e-014
gb|CO197733.1|CO197733  GEO1_8_E04.g1_A029 Root gravitropism...    68   3e-009
dbj|BD236455.1|  Materials and method for modification of pl...    68   3e-009
emb|AJ309090.1|PPI309090  Pinus pinaster partial mRNA for pu...    48   0.002
gb|DN610972.1|DN610972  EST964022 Subtracted pine embryo lib...    44   0.039
gb|DT627908.1|DT627908  EST1156657 Subtracted pine embryo li...    44   0.039

>dbj|BD236454.1| Materials and method for modification of plant cell wall
           polysaccharides
          Length = 299

 Score = 85.7 bits (43), Expect = 1e-014
 Identities = 118/143 (82%)
 Strand = Plus / Plus

                                                                       
Query: 607 gtctggtctgacgacaataaggagaagaagctttacattgtgctcatcagcgtgcatggt 666
           ||||||||||| ||||||||||  |||   || |||||||||||||| ||| ||||||||
Sbjct: 157 gtctggtctgatgacaataagggaaagcgcctgtacattgtgctcataagcttgcatggt 216

                                                                       
Query: 667 cttgttcgtggagaaaacatggaactaggtcgtgattctgatacaggtggccaggtgaaa 726
            | ||  | || |||||||||||| | ||| | |||||||||||||| || ||||| |||
Sbjct: 217 ttagtaagaggtgaaaacatggaattgggtagagattctgatacaggcgggcaggttaaa 276

                                  
Query: 727 tatgtggtcgaacttgcaagagc 749
           || || || ||||||||||||||
Sbjct: 277 tacgttgtagaacttgcaagagc 299



>gb|CO197733.1|CO197733 GEO1_8_E04.g1_A029 Root gravitropism April 2003 test Pinus taeda cDNA
            clone GEO1_8_E04_A029 5', mRNA sequence
          Length = 642

 Score = 67.9 bits (34), Expect = 3e-009
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                        
Query: 1388 atggtcgttacatgcctaggatggtggtgattcctccgggaatggatttcagcaatgttg 1447
            ||||||||||||||||| | |||  ||| || ||||| |||||||| |||||||||||||
Sbjct: 15   atggtcgttacatgcctcgaatgtcggttatacctcctggaatggacttcagcaatgttg 74

                      
Query: 1448 tagttcatga 1457
            |||| |||||
Sbjct: 75   tagtgcatga 84



>dbj|BD236455.1| Materials and method for modification of plant cell wall
            polysaccharides
          Length = 304

 Score = 67.9 bits (34), Expect = 3e-009
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                        
Query: 1388 atggtcgttacatgcctaggatggtggtgattcctccgggaatggatttcagcaatgttg 1447
            ||||||||||||||||| | |||  ||| || ||||| |||||||| |||||||||||||
Sbjct: 43   atggtcgttacatgcctcgaatgtcggttatacctcctggaatggacttcagcaatgttg 102

                      
Query: 1448 tagttcatga 1457
            |||| |||||
Sbjct: 103  tagtgcatga 112



>emb|AJ309090.1|PPI309090 Pinus pinaster partial mRNA for putative sucrose-phosphate synthase
          Length = 545

 Score = 48.1 bits (24), Expect = 0.002
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 736 gaacttgcaagagcgatgtcaatgatgcctgg 767
           ||||||||||||||  ||||||||||||||||
Sbjct: 11  gaacttgcaagagcattgtcaatgatgcctgg 42



>gb|DN610972.1|DN610972 EST964022 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
            clone PSAAW26, mRNA sequence
          Length = 689

 Score = 44.1 bits (22), Expect = 0.039
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                        
Query: 1384 tgccatggtcgttacatgcctaggatggtggtgattcctccgggaatggatttcagcaat 1443
            ||||||||||| | ||||||  | |||||||| || ||||| || ||||| |||||||||
Sbjct: 97   tgccatggtcggttcatgccccgaatggtggttatacctcccggtatggacttcagcaat 156

              
Query: 1444 gt 1445
            ||
Sbjct: 157  gt 158



>gb|DT627908.1|DT627908 EST1156657 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
            clone PIMCS08 5' end, mRNA sequence
          Length = 690

 Score = 44.1 bits (22), Expect = 0.039
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                        
Query: 1384 tgccatggtcgttacatgcctaggatggtggtgattcctccgggaatggatttcagcaat 1443
            ||||||||||| | ||||||  | |||||||| || ||||| || ||||| |||||||||
Sbjct: 594  tgccatggtcggttcatgccccgaatggtggttatacctcccggtatggacttcagcaat 535

              
Query: 1444 gt 1445
            ||
Sbjct: 534  gt 533



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 396,061
Number of Sequences: 355925
Number of extensions: 396061
Number of successful extensions: 109317
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109298
Number of HSP's gapped (non-prelim): 17
length of query: 3527
length of database: 217,277,237
effective HSP length: 20
effective length of query: 3507
effective length of database: 210,158,737
effective search space: 737026690659
effective search space used: 737026690659
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)