BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713002.2.1
(923 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF477487.1|CF477487 RTWW3_8_C05.b1_A022 Well-watered lob... 40 0.16
gb|DR018710.1|DR018710 STRS1_25_E07.b1_A034 Shoot tip pitch... 40 0.16
gb|DR024976.1|DR024976 STRS1_68_F03.g1_A034 Shoot tip pitch... 40 0.16
gb|DR088707.1|DR088707 RTAL1_4_A04.b1_A029 Roots plus added... 40 0.16
gb|DR094663.1|DR094663 STRR1_16_A09.b1_A033 Stem Response R... 40 0.16
gb|DR097460.1|DR097460 STRR1_34_F10.g3_A033 Stem Response R... 40 0.16
gb|DR100967.1|DR100967 STRR1_69_D03.g1_A033 Stem Response R... 40 0.16
gb|DR167935.1|DR167935 RTPHOS1_22_C07.b1_A029 Roots minus p... 40 0.16
>gb|CF477487.1|CF477487 RTWW3_8_C05.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_8_C05_A022 3', mRNA sequence
Length = 633
Score = 40.1 bits (20), Expect = 0.16
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 588 tatgtatatatatggtatatgtgg 611
|||||||||||||||||| |||||
Sbjct: 607 tatgtatatatatggtatttgtgg 630
>gb|DR018710.1|DR018710 STRS1_25_E07.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_25_E07_A034 3', mRNA sequence
Length = 869
Score = 40.1 bits (20), Expect = 0.16
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 357 ttcaacgagaaccagaaggagagcggcgtggagcagaactgggggctcttctaccc 412
|||||||||||| | ||||| ||| ||||||||| ||| ||||||||||||||
Sbjct: 607 ttcaacgagaacgaaaaggacgccggagtggagcagcactttgggctcttctaccc 662
>gb|DR024976.1|DR024976 STRS1_68_F03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_68_F03_A034 5', mRNA sequence
Length = 624
Score = 40.1 bits (20), Expect = 0.16
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 357 ttcaacgagaaccagaaggagagcggcgtggagcagaactgggggctcttctaccc 412
|||||||||||| | ||||| ||| ||||||||| ||| ||||||||||||||
Sbjct: 357 ttcaacgagaacaaaaaggacgccggagtggagcagcactttgggctcttctaccc 412
>gb|DR088707.1|DR088707 RTAL1_4_A04.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_4_A04_A029 3', mRNA sequence
Length = 455
Score = 40.1 bits (20), Expect = 0.16
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 357 ttcaacgagaaccagaaggagagcggcgtggagcagaactgggggctcttctaccc 412
|||||||||||| | ||||| ||| ||||||||| ||| ||||||||||||||
Sbjct: 193 ttcaacgagaacgaaaaggacgccggagtggagcagcactttgggctcttctaccc 248
>gb|DR094663.1|DR094663 STRR1_16_A09.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_16_A09_A033 3', mRNA sequence
Length = 768
Score = 40.1 bits (20), Expect = 0.16
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 357 ttcaacgagaaccagaaggagagcggcgtggagcagaactgggggctcttctaccc 412
|||||||||||| | ||||| ||| ||||||||| ||| ||||||||||||||
Sbjct: 125 ttcaacgagaacgaaaaggacgccggagtggagcagcactttgggctcttctaccc 70
>gb|DR097460.1|DR097460 STRR1_34_F10.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_34_F10_A033 5', mRNA sequence
Length = 924
Score = 40.1 bits (20), Expect = 0.16
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 357 ttcaacgagaaccagaaggagagcggcgtggagcagaactgggggctcttctaccc 412
|||||||||||| | ||||| ||| ||||||||| ||| ||||||||||||||
Sbjct: 703 ttcaacgagaacgaaaaggacgccggagtggagcagcactttgggctcttctaccc 758
>gb|DR100967.1|DR100967 STRR1_69_D03.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_69_D03_A033 5', mRNA sequence
Length = 550
Score = 40.1 bits (20), Expect = 0.16
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 357 ttcaacgagaaccagaaggagagcggcgtggagcagaactgggggctcttctaccc 412
|||||||||||| | ||||| ||| ||||||||| ||| ||||||||||||||
Sbjct: 314 ttcaacgagaacaaaaaggacgccggagtggagcagcactttgggctcttctaccc 369
>gb|DR167935.1|DR167935 RTPHOS1_22_C07.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_22_C07_A029 3', mRNA sequence
Length = 592
Score = 40.1 bits (20), Expect = 0.16
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 357 ttcaacgagaaccagaaggagagcggcgtggagcagaactgggggctcttctaccc 412
|||||||||||| | ||||| ||| ||||||||| ||| ||||||||||||||
Sbjct: 346 ttcaacgagaacgaaaaggacgccggagtggagcagcactttgggctcttctaccc 401
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 81,447
Number of Sequences: 355925
Number of extensions: 81447
Number of successful extensions: 22963
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22955
Number of HSP's gapped (non-prelim): 8
length of query: 923
length of database: 217,277,237
effective HSP length: 19
effective length of query: 904
effective length of database: 210,514,662
effective search space: 190305254448
effective search space used: 190305254448
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)