BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3712967.2.1
(571 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX254098.1|BX254098 BX254098 Pinus pinaster differenciat... 42 0.024
gb|CO409387.1|CO409387 EST839772 Sequencing ESTs from loblo... 42 0.024
gb|CV135034.1|CV135034 EST846243 Sequencing ESTs from loblo... 42 0.024
gb|CV139014.1|CV139014 EST850223 Sequencing ESTs from loblo... 42 0.024
gb|CV144167.1|CV144167 EST855376 Sequencing ESTs from loblo... 42 0.024
gb|DN446227.1|DN446227 EST942026 Sequencing ESTs from loblo... 42 0.024
gb|DN457297.1|DN457297 EST953096 Sequencing ESTs from loblo... 42 0.024
gb|DN460765.1|DN460765 EST956564 Sequencing ESTs from loblo... 42 0.024
gb|DR068901.1|DR068901 RTDK1_3_C06.g1_A029 Roots, dark Pinu... 42 0.024
gb|DR094024.1|DR094024 STRR1_12_A05.b1_A033 Stem Response R... 42 0.024
gb|DR094095.1|DR094095 STRR1_12_A05.g1_A033 Stem Response R... 42 0.024
gb|DR100596.1|DR100596 STRR1_65_B05.g1_A033 Stem Response R... 42 0.024
gb|DR745326.1|DR745326 RTCU1_28_C07.g1_A029 Roots plus adde... 42 0.024
gb|DT625974.1|DT625974 EST1157898 Sequencing ESTs from lobl... 42 0.024
gb|CD020476.1|CD020476 NXNV_066_F12_F Nsf Xylem Normal wood... 38 0.38
gb|CF385189.1|CF385189 RTDR1_2_D12.g1_A015 Loblolly pine ro... 38 0.38
gb|CF386493.1|CF386493 RTDR1_14_A12.g1_A015 Loblolly pine r... 38 0.38
gb|CF399770.1|CF399770 RTDS3_25_F08.g1_A022 Drought-stresse... 38 0.38
gb|CF471766.1|CF471766 RTDS1_6_E05.g1_A015 Drought-stressed... 38 0.38
gb|CF476612.1|CF476612 RTWW3_2_B12.g1_A022 Well-watered lob... 38 0.38
gb|CF478196.1|CF478196 RTWW3_19_H12.g1_A022 Well-watered lo... 38 0.38
gb|CF479704.1|CF479704 RTWW3_11_G10.g1_A022 Well-watered lo... 38 0.38
gb|CO164046.1|CO164046 FLD1_45_A12.g1_A029 Root flooded Pin... 38 0.38
gb|CO198393.1|CO198393 GEO1_13_G12.b1_A029 Root gravitropis... 38 0.38
gb|CO200336.1|CO200336 GEO2_6_G08.g1_A032 Root gravitropism... 38 0.38
gb|CV147499.1|CV147499 EST858708 Sequencing ESTs from loblo... 38 0.38
gb|DN450665.1|DN450665 EST946464 Sequencing ESTs from loblo... 38 0.38
gb|DN456512.1|DN456512 EST952311 Sequencing ESTs from loblo... 38 0.38
gb|DN456653.1|DN456653 EST952452 Sequencing ESTs from loblo... 38 0.38
gb|DN459097.1|DN459097 EST954896 Sequencing ESTs from loblo... 38 0.38
gb|DN460417.1|DN460417 EST956216 Sequencing ESTs from loblo... 38 0.38
gb|DR023977.1|DR023977 STRS1_61_B01.g1_A034 Shoot tip pitch... 38 0.38
gb|DR051348.1|DR051348 RTBOR1_29_A08.g1_A029 Roots plus add... 38 0.38
gb|DR058114.1|DR058114 RTNIT1_9_G02.g1_A029 Roots minus nit... 38 0.38
gb|DR078005.1|DR078005 RTFEPL1_1_G09.b1_A029 Roots plus add... 38 0.38
gb|DR081477.1|DR081477 RTFEPL1_29_H11.g1_A029 Roots plus ad... 38 0.38
gb|DR081699.1|DR081699 RTFEPL1_31_C07.g1_A029 Roots plus ad... 38 0.38
gb|DR090220.1|DR090220 RTAL1_13_B11.g1_A029 Roots plus adde... 38 0.38
gb|DR112046.1|DR112046 RTS1_25_B01.g1_A029 Roots minus sulf... 38 0.38
gb|DR168946.1|DR168946 RTPHOS1_28_H10.g1_A029 Roots minus p... 38 0.38
gb|DT625124.1|DT625124 EST1159399 Sequencing ESTs from lobl... 38 0.38
gb|DT625384.1|DT625384 EST1159659 Sequencing ESTs from lobl... 38 0.38
gb|DT626681.1|DT626681 EST1159757 Sequencing ESTs from lobl... 38 0.38
gb|DT626775.1|DT626775 EST1159851 Sequencing ESTs from lobl... 38 0.38
gb|AF441536.1| Pinus taeda PtTX3125 microsatellite sequence 38 0.38
>gb|BX254098.1|BX254098 BX254098 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP093C08, mRNA sequence
Length = 568
Score = 42.1 bits (21), Expect = 0.024
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 213 cagcagcagcaacagcaacaa 233
>gb|CO409387.1|CO409387 EST839772 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAKP22 5' end, mRNA sequence
Length = 941
Score = 42.1 bits (21), Expect = 0.024
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 867 cagcagcagcaacagcaacaa 887
>gb|CV135034.1|CV135034 EST846243 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICCI71 5' end, mRNA sequence
Length = 957
Score = 42.1 bits (21), Expect = 0.024
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 815 cagcagcagcaacagcaacaa 835
>gb|CV139014.1|CV139014 EST850223 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIBA02 5' end, mRNA sequence
Length = 888
Score = 42.1 bits (21), Expect = 0.024
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 865 cagcagcagcaacagcaacaa 885
>gb|CV144167.1|CV144167 EST855376 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPID211 5' end, mRNA sequence
Length = 924
Score = 42.1 bits (21), Expect = 0.024
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 812 cagcagcagcaacagcaacaa 832
>gb|DN446227.1|DN446227 EST942026 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIBF37 5' end, mRNA sequence
Length = 917
Score = 42.1 bits (21), Expect = 0.024
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 867 cagcagcagcaacagcaacaa 887
>gb|DN457297.1|DN457297 EST953096 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIGY36 5' end, mRNA sequence
Length = 843
Score = 42.1 bits (21), Expect = 0.024
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 796 cagcagcagcaacagcaacaa 816
>gb|DN460765.1|DN460765 EST956564 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPII230 5' end, mRNA sequence
Length = 915
Score = 42.1 bits (21), Expect = 0.024
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 825 cagcagcagcaacagcaacaa 845
>gb|DR068901.1|DR068901 RTDK1_3_C06.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_3_C06_A029 5', mRNA sequence
Length = 728
Score = 42.1 bits (21), Expect = 0.024
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 300 cagcagcagcaacagcaacaa 280
>gb|DR094024.1|DR094024 STRR1_12_A05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_A05_A033 3', mRNA sequence
Length = 767
Score = 42.1 bits (21), Expect = 0.024
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 429 cagcagcagcaacagcaacaa 449
>gb|DR094095.1|DR094095 STRR1_12_A05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_A05_A033 5', mRNA sequence
Length = 807
Score = 42.1 bits (21), Expect = 0.024
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 615 cagcagcagcaacagcaacaa 635
>gb|DR100596.1|DR100596 STRR1_65_B05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_65_B05_A033 5', mRNA sequence
Length = 425
Score = 42.1 bits (21), Expect = 0.024
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 316 cagcagcagcaacagcaacaa 296
>gb|DR745326.1|DR745326 RTCU1_28_C07.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_28_C07_A029 5', mRNA sequence
Length = 556
Score = 42.1 bits (21), Expect = 0.024
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 361 cagcagcagcaacagcaacaa 341
>gb|DT625974.1|DT625974 EST1157898 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA571 5' end, mRNA sequence
Length = 992
Score = 42.1 bits (21), Expect = 0.024
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 815 cagcagcagcaacagcaacaa 835
>gb|CD020476.1|CD020476 NXNV_066_F12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_066_F12 5', mRNA sequence
Length = 120
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 47 ccagcagcagcaacagcaa 65
>gb|CF385189.1|CF385189 RTDR1_2_D12.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_2_D12_A015 5', mRNA
sequence
Length = 753
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 527 cagcagcagcaacagcaac 545
>gb|CF386493.1|CF386493 RTDR1_14_A12.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_14_A12_A015 5', mRNA
sequence
Length = 684
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 273 ccagcagcagcaacagcaa 291
>gb|CF399770.1|CF399770 RTDS3_25_F08.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_25_F08_A022 5', mRNA sequence
Length = 567
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 277 ccagcagcagcaacagcaa 295
>gb|CF471766.1|CF471766 RTDS1_6_E05.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_6_E05_A015 5', mRNA sequence
Length = 655
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 334 ccagcagcagcaacagcaa 352
>gb|CF476612.1|CF476612 RTWW3_2_B12.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_2_B12_A022 5', mRNA sequence
Length = 616
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 202 cagcagcagcaacagcaac 220
>gb|CF478196.1|CF478196 RTWW3_19_H12.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_19_H12_A022 5', mRNA sequence
Length = 731
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 628 cagcagcagcaacagcaac 646
>gb|CF479704.1|CF479704 RTWW3_11_G10.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_11_G10_A022 5', mRNA sequence
Length = 737
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 106 cagcagcagcaacagcaac 124
>gb|CO164046.1|CO164046 FLD1_45_A12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_45_A12_A029 5', mRNA sequence
Length = 850
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 611 cagcagcagcaacagcaac 629
>gb|CO198393.1|CO198393 GEO1_13_G12.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_13_G12_A029 3', mRNA sequence
Length = 815
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 515 ccagcagcagcaacagcaa 497
>gb|CO200336.1|CO200336 GEO2_6_G08.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_G08_A032 5', mRNA sequence
Length = 859
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 310 ccagcagcagcaacagcaa 328
>gb|CV147499.1|CV147499 EST858708 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIE792 5' end, mRNA sequence
Length = 899
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 308 ccagcagcagcaacagcaa 326
>gb|DN450665.1|DN450665 EST946464 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIES47 5' end, mRNA sequence
Length = 720
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 148 ccagcagcagcaacagcaa 166
>gb|DN456512.1|DN456512 EST952311 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIGP78 5' end, mRNA sequence
Length = 899
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 212 ccagcagcagcaacagcaa 230
>gb|DN456653.1|DN456653 EST952452 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIGR37 5' end, mRNA sequence
Length = 866
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 214 ccagcagcagcaacagcaa 232
>gb|DN459097.1|DN459097 EST954896 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHJ29 5' end, mRNA sequence
Length = 973
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 258 ccagcagcagcaacagcaa 276
>gb|DN460417.1|DN460417 EST956216 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHY32 5' end, mRNA sequence
Length = 799
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 256 ccagcagcagcaacagcaa 274
>gb|DR023977.1|DR023977 STRS1_61_B01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_61_B01_A034 5', mRNA sequence
Length = 856
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 284 ccagcagcagcaacagcaa 302
>gb|DR051348.1|DR051348 RTBOR1_29_A08.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_29_A08_A029 5', mRNA sequence
Length = 749
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 318 ccagcagcagcaacagcaa 336
>gb|DR058114.1|DR058114 RTNIT1_9_G02.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_9_G02_A029 5', mRNA sequence
Length = 729
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 228 ccagcagcagcaacagcaa 246
>gb|DR078005.1|DR078005 RTFEPL1_1_G09.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_1_G09_A029 3', mRNA sequence
Length = 774
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 546 ccagcagcagcaacagcaa 528
>gb|DR081477.1|DR081477 RTFEPL1_29_H11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_29_H11_A029 5', mRNA sequence
Length = 584
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 353 cagcagcagcaacagcaac 371
>gb|DR081699.1|DR081699 RTFEPL1_31_C07.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_31_C07_A029 5', mRNA sequence
Length = 379
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 324 cagcagcagcaacagcaac 342
>gb|DR090220.1|DR090220 RTAL1_13_B11.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_13_B11_A029 5', mRNA sequence
Length = 820
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 107 cagcagcagcaacagcaac 125
>gb|DR112046.1|DR112046 RTS1_25_B01.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_25_B01_A029 5', mRNA sequence
Length = 827
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 331 cagcagcagcaacagcaac 349
>gb|DR168946.1|DR168946 RTPHOS1_28_H10.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_28_H10_A029 5', mRNA sequence
Length = 665
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 253 cagcagcagcaacagcaac 271
>gb|DT625124.1|DT625124 EST1159399 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAM16 5' end, mRNA sequence
Length = 787
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 308 ccagcagcagcaacagcaa 326
>gb|DT625384.1|DT625384 EST1159659 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAP01 5' end, mRNA sequence
Length = 953
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 214 ccagcagcagcaacagcaa 232
>gb|DT626681.1|DT626681 EST1159757 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAQ13 5' end, mRNA sequence
Length = 891
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 212 ccagcagcagcaacagcaa 230
>gb|DT626775.1|DT626775 EST1159851 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAR19 5' end, mRNA sequence
Length = 867
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30 ccagcagcagcaacagcaa 48
|||||||||||||||||||
Sbjct: 258 ccagcagcagcaacagcaa 276
>gb|AF441536.1| Pinus taeda PtTX3125 microsatellite sequence
Length = 633
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 32 agcagcagcaacagcaaca 50
|||||||||||||||||||
Sbjct: 113 agcagcagcaacagcaaca 131
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 53,112
Number of Sequences: 355925
Number of extensions: 53112
Number of successful extensions: 16280
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16188
Number of HSP's gapped (non-prelim): 92
length of query: 571
length of database: 217,277,237
effective HSP length: 19
effective length of query: 552
effective length of database: 210,514,662
effective search space: 116204093424
effective search space used: 116204093424
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)