BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3696743.2.1
(977 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF389519.1|CF389519 RTDR2_8_B11.b1_A021 Loblolly pine ro... 184 5e-045
gb|CO365327.1|CO365327 RTK1_25_B06.b1_A029 Roots minus pota... 184 5e-045
gb|CO365443.1|CO365443 RTK1_17_C10.b1_A029 Roots minus pota... 184 5e-045
gb|CO365529.1|CO365529 RTK1_17_C10.g1_A029 Roots minus pota... 184 5e-045
gb|CO369002.1|CO369002 RTK1_44_F12.b1_A029 Roots minus pota... 184 5e-045
gb|DR017548.1|DR017548 STRS1_17_B02.b1_A034 Shoot tip pitch... 184 5e-045
gb|DR017625.1|DR017625 STRS1_17_B02.g1_A034 Shoot tip pitch... 184 5e-045
gb|DR091080.1|DR091080 RTAL1_19_F09.b1_A029 Roots plus adde... 184 5e-045
gb|DR091162.1|DR091162 RTAL1_19_F09.g1_A029 Roots plus adde... 184 5e-045
gb|DR166003.1|DR166003 RTPHOS1_8_E04.g1_A029 Roots minus ph... 184 5e-045
gb|BG040229.1|BG040229 NXSI_110_A07_F NXSI (Nsf Xylem Side ... 180 7e-044
gb|CO363849.1|CO363849 RTK1_12_E06.b1_A029 Roots minus pota... 176 1e-042
gb|CO365399.1|CO365399 RTK1_25_B06.g1_A029 Roots minus pota... 176 1e-042
gb|CF670190.1|CF670190 RTCNT1_48_D08.g1_A029 Root control P... 168 3e-040
gb|AI725280.1|AI725280 1146 PtIFG2 Pinus taeda cDNA clone 9... 167 1e-039
gb|CF393001.1|CF393001 RTDR3_18_E12.g1_A022 Loblolly pine r... 145 4e-033
gb|CO369078.1|CO369078 RTK1_44_F12.g1_A029 Roots minus pota... 145 4e-033
gb|BG317563.1|BG317563 NXPV_003_C07_F NXPV (Nsf Xylem Plani... 143 2e-032
gb|DR053203.1|DR053203 RTCA1_9_D06.g1_A029 Roots minus calc... 137 1e-030
gb|DR097217.1|DR097217 STRR1_33_G07.b1_A033 Stem Response R... 129 2e-028
gb|DR177283.1|DR177283 RTMNUT1_4_H01.b1_A029 Roots minus mi... 123 1e-026
gb|DR097306.1|DR097306 STRR1_33_G07.g3_A033 Stem Response R... 119 2e-025
gb|BX679820.1|BX679820 BX679820 RS Pinus pinaster cDNA clon... 117 9e-025
gb|DR095290.1|DR095290 STRR1_20_C06.b1_A033 Stem Response R... 117 9e-025
gb|DR053121.1|DR053121 RTCA1_9_D06.b1_A029 Roots minus calc... 105 3e-021
gb|CR392268.1|CR392268 CR392268 RN Pinus pinaster cDNA clon... 70 2e-010
gb|DR095364.1|DR095364 STRR1_20_C06.g1_A033 Stem Response R... 70 2e-010
gb|CF389628.1|CF389628 RTDR2_8_B11.g1_A021 Loblolly pine ro... 64 1e-008
gb|DT638906.1|DT638906 EST1153837 Normalized pine embryo li... 64 1e-008
gb|CO368589.1|CO368589 RTK1_41_C07.g1_A029 Roots minus pota... 44 0.011
gb|CX651686.1|CX651686 COLD1_54_D03.b1_A029 Root cold Pinus... 44 0.011
gb|CX651761.1|CX651761 COLD1_54_D03.g1_A029 Root cold Pinus... 44 0.011
gb|DR019332.1|DR019332 STRS1_29_F12.b1_A034 Shoot tip pitch... 44 0.011
gb|DR081033.1|DR081033 RTFEPL1_26_H08.g1_A029 Roots plus ad... 44 0.011
gb|DR694441.1|DR694441 EST1084533 Normalized pine embryo li... 44 0.011
gb|DR694995.1|DR694995 EST1085088 Normalized pine embryo li... 44 0.011
gb|CO165762.1|CO165762 FLD1_56_G11.g1_A029 Root flooded Pin... 40 0.17
gb|DR012422.1|DR012422 HEAT1_12_E12.g1_A029 Root at 37 C fo... 40 0.17
>gb|CF389519.1|CF389519 RTDR2_8_B11.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_8_B11_A021 3', mRNA
sequence
Length = 645
Score = 184 bits (93), Expect = 5e-045
Identities = 234/281 (83%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
||||||||||| ||||||||||| || || || |||||||| ||||| || || || ||
Sbjct: 297 tctggctccatataaaaccgagcccgaaatgcagccagatgggcataatacgctgggggt 238
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| || || ||||| ||||||||||| ||||| |||||||| | |||||||| | |
Sbjct: 237 actatagaaactgaccgtgtgcacctcgcatatgtgtaacagagattgttggttaaggac 178
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
||||| |||||||| || |||||||| |||||||| |||||||||||||||||||| |
Sbjct: 177 tgcaatccatcagctgtgaatttgttttcatcccaaagaacatgataatgggcaggccta 118
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| ||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||||
Sbjct: 117 ctagttccctgaataccagcatggctgcagaggtaaaagtcaaattctgttggatggcaa 58
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccact 694
|| || || ||||| |||||||| |||| |||||| |||||
Sbjct: 57 attttggaatccactacagtgcctggcaatatgtttccact 17
>gb|CO365327.1|CO365327 RTK1_25_B06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_25_B06_A029 3', mRNA sequence
Length = 755
Score = 184 bits (93), Expect = 5e-045
Identities = 234/281 (83%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
||||||||||| ||||||||||| || || || |||||||| ||||| || || || ||
Sbjct: 319 tctggctccatataaaaccgagcccgaaatgcagccagatgggcataatacgctgggggt 260
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| || || ||||| ||||||||||| ||||| |||||||| || ||||| || | |
Sbjct: 259 actatagaaactgaccgtgtgcacctcgcatatgtgtaacagaaattgttagttaaggac 200
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
||||| |||||||| || |||||||| |||||||| |||||||||||||||||||| |
Sbjct: 199 tgcaatccatcagctgtgaatttgttttcatcccaaagaacatgataatgggcaggccta 140
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| ||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||||
Sbjct: 139 ctagttccctgaataccagcatggctgcagaggtaaaagtcaaattctgttggatggcaa 80
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccact 694
|| || || ||||| |||||||| |||| |||||| |||||
Sbjct: 79 attttggaatccactacagtgcctggcaatatgtttccact 39
>gb|CO365443.1|CO365443 RTK1_17_C10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_17_C10_A029 3', mRNA sequence
Length = 871
Score = 184 bits (93), Expect = 5e-045
Identities = 234/281 (83%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
||||||||||| ||||||||||| || || || |||||||| ||||| || || || ||
Sbjct: 424 tctggctccatataaaaccgagcccgaaatgcagccagatgggcataatacgctgggggt 365
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| || || ||||| ||||||||||| ||||| |||||||| | |||||||| | |
Sbjct: 364 actatagaaactgaccgtgtgcacctcgcatatgtgtaacagagattgttggttaaggac 305
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
||||| |||||||| || |||||||| |||||||| |||||||||||||||||||| |
Sbjct: 304 tgcaatccatcagctgtgaatttgttttcatcccaaagaacatgataatgggcaggccta 245
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| ||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||||
Sbjct: 244 ctagttccctgaataccagcatggctgcagaggtaaaagtcaaattctgttggatggcaa 185
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccact 694
|| || || ||||| |||||||| |||| |||||| |||||
Sbjct: 184 attttggaatccactacagtgcctggcaatatgtttccact 144
>gb|CO365529.1|CO365529 RTK1_17_C10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_17_C10_A029 5', mRNA sequence
Length = 831
Score = 184 bits (93), Expect = 5e-045
Identities = 234/281 (83%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
||||||||||| ||||||||||| || || || |||||||| ||||| || || || ||
Sbjct: 741 tctggctccatataaaaccgagcccgaaatgcagccagatgggcataatacgctgggggt 682
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| || || ||||| ||||||||||| ||||| |||||||| | |||||||| | |
Sbjct: 681 actatagaaactgaccgtgtgcacctcgcatatgtgtaacagagattgttggttaaggac 622
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
||||| |||||||| || |||||||| |||||||| |||||||||||||||||||| |
Sbjct: 621 tgcaatccatcagctgtgaatttgttttcatcccaaagaacatgataatgggcaggccta 562
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| ||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||||
Sbjct: 561 ctagttccctgaataccagcatggctgcagaggtaaaagtcaaattctgttggatggcaa 502
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccact 694
|| || || ||||| |||||||| |||| |||||| |||||
Sbjct: 501 attttggaatccactacagtgcctggcaatatgtttccact 461
Score = 63.9 bits (32), Expect = 1e-008
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 759 accacgacaaaagtaactggaggctggtaatcagactccaatgatgcacaggcctttcta 818
||||| ||||||||||||||||| || |||| | || | |||||||||||||||| |
Sbjct: 396 accaccacaaaagtaactggaggttgataatttggttctagagatgcacaggcctttcga 337
Query: 819 atggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacaccatccctg 878
|| ||||| | || |||||||||||||| || ||||| ||||| || || ||||| |||
Sbjct: 336 atagcatctaactcatacaacagaacttgataaaactggccctcgcttactccatctctg 277
Query: 879 tagaatat 886
|| |||||
Sbjct: 276 taaaatat 269
>gb|CO369002.1|CO369002 RTK1_44_F12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_44_F12_A029 3', mRNA sequence
Length = 823
Score = 184 bits (93), Expect = 5e-045
Identities = 234/281 (83%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
||||||||||| ||||||||||| || || || |||||||| ||||| || || || ||
Sbjct: 381 tctggctccatataaaaccgagcccgaaatgcagccagatgggcataatacgctgggggt 322
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| || || ||||| ||||||||||| ||||| |||||||| | |||||||| | |
Sbjct: 321 actatagaaactgaccgtgtgcacctcgcatatgtgtaacagagattgttggttaaggac 262
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
||||| |||||||| || |||||||| |||||||| |||||||||||||||||||| |
Sbjct: 261 tgcaatccatcagctgtgaatttgttttcatcccaaagaacatgataatgggcaggccta 202
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| ||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||||
Sbjct: 201 ctagttccctgaataccagcatggctgcagaggtaaaagtcaaattctgttggatggcaa 142
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccact 694
|| || || ||||| |||||||| |||| |||||| |||||
Sbjct: 141 attttggaatccactacagtgcctggcaatatgtttccact 101
>gb|DR017548.1|DR017548 STRS1_17_B02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_B02_A034 3', mRNA sequence
Length = 759
Score = 184 bits (93), Expect = 5e-045
Identities = 234/281 (83%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
||||||||||| ||||||||||| || || || |||||||| ||||| || || || ||
Sbjct: 328 tctggctccatataaaaccgagcccgaaatgcagccagatgggcataatacgctgggggt 269
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| || || ||||| ||||||||||| ||||| |||||||| | |||||||| | |
Sbjct: 268 actatagaaactgaccgtgtgcacctcgcatatgtgtaacagagattgttggttaaggac 209
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
||||| |||||||| || |||||||| |||||||| |||||||||||||||||||| |
Sbjct: 208 tgcaatccatcagctgtgaatttgttttcatcccaaagaacatgataatgggcaggccta 149
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| ||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||||
Sbjct: 148 ctagttccctgaataccagcatggctgcagaggtaaaagtcaaattctgttggatggcaa 89
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccact 694
|| || || ||||| |||||||| |||| |||||| |||||
Sbjct: 88 attttggaatccactacagtgcctggcaatatgtttccact 48
>gb|DR017625.1|DR017625 STRS1_17_B02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_B02_A034 5', mRNA sequence
Length = 626
Score = 184 bits (93), Expect = 5e-045
Identities = 234/281 (83%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
||||||||||| ||||||||||| || || || |||||||| ||||| || || || ||
Sbjct: 513 tctggctccatataaaaccgagcccgaaatgcagccagatgggcataatacgctgggggt 454
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| || || ||||| ||||||||||| ||||| |||||||| | |||||||| | |
Sbjct: 453 actatagaaactgaccgtgtgcacctcgcatatgtgtaacagagattgttggttaaggac 394
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
||||| |||||||| || |||||||| |||||||| |||||||||||||||||||| |
Sbjct: 393 tgcaatccatcagctgtgaatttgttttcatcccaaagaacatgataatgggcaggccta 334
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| ||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||||
Sbjct: 333 ctagttccctgaataccagcatggctgcagaggtaaaagtcaaattctgttggatggcaa 274
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccact 694
|| || || ||||| |||||||| |||| |||||| |||||
Sbjct: 273 attttggaatccactacagtgcctggcaatatgtttccact 233
Score = 63.9 bits (32), Expect = 1e-008
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 759 accacgacaaaagtaactggaggctggtaatcagactccaatgatgcacaggcctttcta 818
||||| ||||||||||||||||| || |||| | || | |||||||||||||||| |
Sbjct: 168 accaccacaaaagtaactggaggttgataatttggttctagagatgcacaggcctttcga 109
Query: 819 atggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacaccatccctg 878
|| ||||| | || |||||||||||||| || ||||| ||||| || || ||||| |||
Sbjct: 108 atagcatctaactcatacaacagaacttgataaaactggccctcgcttactccatctctg 49
Query: 879 tagaatat 886
|| |||||
Sbjct: 48 taaaatat 41
>gb|DR091080.1|DR091080 RTAL1_19_F09.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_19_F09_A029 3', mRNA sequence
Length = 741
Score = 184 bits (93), Expect = 5e-045
Identities = 234/281 (83%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
||||||||||| ||||||||||| || || || |||||||| ||||| || || || ||
Sbjct: 305 tctggctccatataaaaccgagcccgaaatgcagccagatgggcataatacgctgggggt 246
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| || || ||||| ||||||||||| ||||| |||||||| | |||||||| | |
Sbjct: 245 actatagaaactgaccgtgtgcacctcgcatatgtgtaacagagattgttggttaaggac 186
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
||||| |||||||| || |||||||| |||||||| |||||||||||||||||||| |
Sbjct: 185 tgcaatccatcagctgtgaatttgttttcatcccaaagaacatgataatgggcaggccta 126
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| ||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||||
Sbjct: 125 ctagttccctgaataccagcatggctgcagaggtaaaagtcaaattctgttggatggcaa 66
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccact 694
|| || || ||||| |||||||| |||| |||||| |||||
Sbjct: 65 attttggaatccactacagtgcctggcaatatgtttccact 25
>gb|DR091162.1|DR091162 RTAL1_19_F09.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_19_F09_A029 5', mRNA sequence
Length = 796
Score = 184 bits (93), Expect = 5e-045
Identities = 234/281 (83%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
||||||||||| ||||||||||| || || || |||||||| ||||| || || || ||
Sbjct: 547 tctggctccatataaaaccgagcccgaaatgcagccagatgggcataatacgctgggggt 488
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| || || ||||| ||||||||||| ||||| |||||||| | |||||||| | |
Sbjct: 487 actatagaaactgaccgtgtgcacctcgcatatgtgtaacagagattgttggttaaggac 428
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
||||| |||||||| || |||||||| |||||||| |||||||||||||||||||| |
Sbjct: 427 tgcaatccatcagctgtgaatttgttttcatcccaaagaacatgataatgggcaggccta 368
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| ||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||||
Sbjct: 367 ctagttccctgaataccagcatggctgcagaggtaaaagtcaaattctgttggatggcaa 308
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccact 694
|| || || ||||| |||||||| |||| |||||| |||||
Sbjct: 307 attttggaatccactacagtgcctggcaatatgtttccact 267
Score = 56.0 bits (28), Expect = 3e-006
Identities = 104/128 (81%), Gaps = 1/128 (0%)
Strand = Plus / Minus
Query: 759 accacgacaaaagtaactggaggctggtaatcagactccaatgatgcacaggcctttcta 818
||||| ||||||||||||||||| || |||| | || | |||||||||||||||| |
Sbjct: 202 accaccacaaaagtaactggaggttgataatttggttctagagatgcacaggcctttcga 143
Query: 819 atggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacaccatccctg 878
||| |||| | || |||||||||||||| || ||||| ||||| || || ||||| |||
Sbjct: 142 atg-catctaactcatacaacagaacttgataaaactggccctcgcttactccatctctg 84
Query: 879 tagaatat 886
|| |||||
Sbjct: 83 taaaatat 76
>gb|DR166003.1|DR166003 RTPHOS1_8_E04.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_8_E04_A029 5', mRNA sequence
Length = 924
Score = 184 bits (93), Expect = 5e-045
Identities = 234/281 (83%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
||||||||||| ||||||||||| || || || |||||||| ||||| || || || ||
Sbjct: 703 tctggctccatataaaaccgagcccgaaatgcagccagatgggcataatacgctgggggt 644
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| || || ||||| ||||||||||| ||||| |||||||| | |||||||| | |
Sbjct: 643 actatagaaactgaccgtgtgcacctcgcatatgtgtaacagagattgttggttaaggac 584
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
||||| |||||||| || |||||||| |||||||| |||||||||||||||||||| |
Sbjct: 583 tgcaatccatcagctgtgaatttgttttcatcccaaagaacatgataatgggcaggccta 524
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| ||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||||
Sbjct: 523 ctagttccctgaataccagcatggctgcagaggtaaaagtcaaattctgttggatggcaa 464
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccact 694
|| || || ||||| |||||||| |||| |||||| |||||
Sbjct: 463 attttggaatccactacagtgcctggcaatatgtttccact 423
Score = 63.9 bits (32), Expect = 1e-008
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 759 accacgacaaaagtaactggaggctggtaatcagactccaatgatgcacaggcctttcta 818
||||| ||||||||||||||||| || |||| | || | |||||||||||||||| |
Sbjct: 358 accaccacaaaagtaactggaggttgataatttggttctagagatgcacaggcctttcga 299
Query: 819 atggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacaccatccctg 878
|| ||||| | || |||||||||||||| || ||||| ||||| || || ||||| |||
Sbjct: 298 atagcatctaactcatacaacagaacttgataaaactggccctcgcttactccatctctg 239
Query: 879 tagaatat 886
|| |||||
Sbjct: 238 taaaatat 231
>gb|BG040229.1|BG040229 NXSI_110_A07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_110_A07 5' similar to Arabidopsis thaliana
sequence At1g48410 Argonaute protein AGO1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 578
Score = 180 bits (91), Expect = 7e-044
Identities = 229/275 (83%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
||||||||||| ||||||||||| || || || |||||||| ||||| || || || ||
Sbjct: 348 tctggctccatataaaaccgagcccgaaatgcagccagatgggcataatacgctgggggt 289
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| || || ||||| ||||||||||| ||||| |||||||| | |||||||| | |
Sbjct: 288 actatagaaactgaccgtgtgcacctcgcatatgtgtaacagagattgttggttaaggac 229
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
||||| |||||||| || |||||||| |||||||| |||||||||||||||||||| |
Sbjct: 228 tgcaatccatcagctgtgaatttgttttcatcccaaagaacatgataatgggcaggccta 169
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| ||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||||
Sbjct: 168 ctagttccctgaataccagcatggctgcagaggtaaaagtcaaattctgttggatggcaa 109
Query: 654 atctttgagtccaccacagtgcccggcagtatgtt 688
|| || || ||||| |||||||| |||| ||||||
Sbjct: 108 attttggaatccactacagtgcctggcaatatgtt 74
>gb|CO363849.1|CO363849 RTK1_12_E06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_12_E06_A029 3', mRNA sequence
Length = 900
Score = 176 bits (89), Expect = 1e-042
Identities = 233/281 (82%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
||||||||||| ||||||||||| || || || |||||||| ||||| || || || ||
Sbjct: 469 tctggctccatataaaaccgagcccgaaatgcagccagatgggcataatacgctgggggt 410
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| || || ||||| ||||||||||| ||||| |||||||| | ||||| || | |
Sbjct: 409 actatagaaactgaccgtgtgcacctcgcatatgtgtaacagagattgttagttaaggac 350
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
||||| |||||||| || |||||||| |||||||| |||||||||||||||||||| |
Sbjct: 349 tgcaatccatcagctgtgaatttgttttcatcccaaagaacatgataatgggcaggccta 290
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| ||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||||
Sbjct: 289 ctagttccctgaataccagcatggctgcagaggtaaaagtcaaattctgttggatggcaa 230
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccact 694
|| || || ||||| |||||||| |||| |||||| |||||
Sbjct: 229 attttggaatccactacagtgcctggcaatatgtttccact 189
Score = 60.0 bits (30), Expect = 2e-007
Identities = 99/122 (81%)
Strand = Plus / Minus
Query: 759 accacgacaaaagtaactggaggctggtaatcagactccaatgatgcacaggcctttcta 818
||||| ||||||||||||||||| || |||| | || | |||||||||||||||| |
Sbjct: 124 accaccacaaaagtaactggaggttgataatttggttctagagatgcacaggcctttcga 65
Query: 819 atggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacaccatccctg 878
|| ||||| | || |||||||||||||| || ||||| ||||| || || ||||| |||
Sbjct: 64 atagcatctaactcatacaacagaacttgataaaactggccctcgcttactccatctctg 5
Query: 879 ta 880
||
Sbjct: 4 ta 3
>gb|CO365399.1|CO365399 RTK1_25_B06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_25_B06_A029 5', mRNA sequence
Length = 845
Score = 176 bits (89), Expect = 1e-042
Identities = 233/281 (82%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
||||||||||| ||||||||||| || || || |||||||| ||||| || || || ||
Sbjct: 570 tctggctccatataaaaccgagcccgaaatgcagccagatgggcataatacgctgggggt 511
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| || || ||||| ||||||||||| ||||| |||||||| | ||||| || | |
Sbjct: 510 actatagaaactgaccgtgtgcacctcgcatatgtgtaacagagattgttagttaaggac 451
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
||||| |||||||| || |||||||| |||||||| |||||||||||||||||||| |
Sbjct: 450 tgcaatccatcagctgtgaatttgttttcatcccaaagaacatgataatgggcaggccta 391
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| ||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||||
Sbjct: 390 ctagttccctgaataccagcatggctgcagaggtaaaagtcaaattctgttggatggcaa 331
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccact 694
|| || || ||||| |||||||| |||| |||||| |||||
Sbjct: 330 attttggaatccactacagtgcctggcaatatgtttccact 290
Score = 63.9 bits (32), Expect = 1e-008
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 759 accacgacaaaagtaactggaggctggtaatcagactccaatgatgcacaggcctttcta 818
||||| ||||||||||||||||| || |||| | || | |||||||||||||||| |
Sbjct: 225 accaccacaaaagtaactggaggttgataatttggttctagagatgcacaggcctttcga 166
Query: 819 atggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacaccatccctg 878
|| ||||| | || |||||||||||||| || ||||| ||||| || || ||||| |||
Sbjct: 165 atagcatctaactcatacaacagaacttgataaaactggccctcgcttactccatctctg 106
Query: 879 tagaatat 886
|| |||||
Sbjct: 105 taaaatat 98
>gb|CF670190.1|CF670190 RTCNT1_48_D08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_48_D08_A029 5', mRNA sequence
Length = 797
Score = 168 bits (85), Expect = 3e-040
Identities = 223/269 (82%)
Strand = Plus / Minus
Query: 426 taaaaccgagctcggaaggctgccagatgagcatagtatgcaggaggaacgattgatact 485
||||||||||| || || || |||||||| ||||| || || || || || || || |||
Sbjct: 793 taaaaccgagcccgaaatgcagccagatgggcataatacgctgggggtactatagaaact 734
Query: 486 gagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtttgcaacccatca 545
|| ||||||||||| ||||| |||||||| | |||||||| | | ||||| ||||||
Sbjct: 733 gaccgtgtgcacctcgcatatgtgtaacagagattgttggttaaggactgcaatccatca 674
Query: 546 gccgtaaatttgttctcatcccacagaacatgataatgggcaggacggcttgttccctga 605
|| || |||||||| |||||||| |||||||||||||||||||| | || |||||||||
Sbjct: 673 gctgtgaatttgttttcatcccaaagaacatgataatgggcaggcctactagttccctga 614
Query: 606 atgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttgagtcc 665
|| |||||||||||||| ||||| || ||||| || |||||||||||||| || || |||
Sbjct: 613 ataccagcatggctgcagaggtaaaagtcaaattctgttggatggcaaattttggaatcc 554
Query: 666 accacagtgcccggcagtatgttgccact 694
|| |||||||| |||| |||||| |||||
Sbjct: 553 actacagtgcctggcaatatgtttccact 525
Score = 63.9 bits (32), Expect = 1e-008
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 759 accacgacaaaagtaactggaggctggtaatcagactccaatgatgcacaggcctttcta 818
||||| ||||||||||||||||| || |||| | || | |||||||||||||||| |
Sbjct: 460 accaccacaaaagtaactggaggttgataatttggttctagagatgcacaggcctttcga 401
Query: 819 atggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacaccatccctg 878
|| ||||| | || |||||||||||||| || ||||| ||||| || || ||||| |||
Sbjct: 400 atagcatctaactcatacaacagaacttgataaaactggccctcgcttactccatctctg 341
Query: 879 tagaatat 886
|| |||||
Sbjct: 340 taaaatat 333
>gb|AI725280.1|AI725280 1146 PtIFG2 Pinus taeda cDNA clone 9201r, mRNA sequence
Length = 580
Score = 167 bits (84), Expect = 1e-039
Identities = 229/278 (82%)
Strand = Plus / Minus
Query: 417 ggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggaggaacg 476
|||||||| |||||||||| || || || |||||||| ||||| || || || || ||
Sbjct: 383 ggctccatanaaaaccgagcccgaaatgcagccagatgggcataatacgctgggggtact 324
Query: 477 attgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtttgc 536
|| || ||||| ||||||||||| ||||| |||||||| | |||||||| | | |||
Sbjct: 323 atagaaactgaccgtgtgcacctcgcatatgtgtaacagagattgttggttaaggactgc 264
Query: 537 aacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacggctt 596
|| |||||||| || |||||||| |||||||| |||||||||||||||||||| | ||
Sbjct: 263 aatccatcagctgtgaatttgttttcatcccaaagaacatgataatgggcaggcctacta 204
Query: 597 gttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatc 656
||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||||||
Sbjct: 203 gttccctgaataccagcatggctgcagaggtaaaagtcaaattctgttggatggcaaatt 144
Query: 657 tttgagtccaccacagtgcccggcagtatgttgccact 694
|| || |||| |||||||| |||| |||||| |||||
Sbjct: 143 ttggaatccantacagtgcctggcaatatgtttccact 106
>gb|CF393001.1|CF393001 RTDR3_18_E12.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_18_E12_A022 5', mRNA
sequence
Length = 748
Score = 145 bits (73), Expect = 4e-033
Identities = 139/161 (86%)
Strand = Plus / Minus
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
||||| |||||||| || |||||||| |||||||| |||||||||||||||||||| |
Sbjct: 724 tgcaatccatcagctgtgaatttgttttcatcccaaagaacatgataatgggcaggccta 665
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| ||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||||
Sbjct: 664 ctagttccctgaataccagcatggctgcagaggtaaaagtcaaattctgttggatggcaa 605
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccact 694
|| || || ||||| |||||||| |||| |||||| |||||
Sbjct: 604 attttggaatccactacagtgcctggcaatatgtttccact 564
Score = 63.9 bits (32), Expect = 1e-008
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 759 accacgacaaaagtaactggaggctggtaatcagactccaatgatgcacaggcctttcta 818
||||| ||||||||||||||||| || |||| | || | |||||||||||||||| |
Sbjct: 499 accaccacaaaagtaactggaggttgataatttggttctagagatgcacaggcctttcga 440
Query: 819 atggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacaccatccctg 878
|| ||||| | || |||||||||||||| || ||||| ||||| || || ||||| |||
Sbjct: 439 atagcatctaactcatacaacagaacttgataaaactggccctcgcttactccatctctg 380
Query: 879 tagaatat 886
|| |||||
Sbjct: 379 taaaatat 372
>gb|CO369078.1|CO369078 RTK1_44_F12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_44_F12_A029 5', mRNA sequence
Length = 779
Score = 145 bits (73), Expect = 4e-033
Identities = 139/161 (86%)
Strand = Plus / Minus
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
||||| |||||||| || |||||||| |||||||| |||||||||||||||||||| |
Sbjct: 758 tgcaatccatcagctgtgaatttgttttcatcccaaagaacatgataatgggcaggccta 699
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| ||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||||
Sbjct: 698 ctagttccctgaataccagcatggctgcagaggtaaaagtcaaattctgttggatggcaa 639
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccact 694
|| || || ||||| |||||||| |||| |||||| |||||
Sbjct: 638 attttggaatccactacagtgcctggcaatatgtttccact 598
Score = 63.9 bits (32), Expect = 1e-008
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 759 accacgacaaaagtaactggaggctggtaatcagactccaatgatgcacaggcctttcta 818
||||| ||||||||||||||||| || |||| | || | |||||||||||||||| |
Sbjct: 533 accaccacaaaagtaactggaggttgataatttggttctagagatgcacaggcctttcga 474
Query: 819 atggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacaccatccctg 878
|| ||||| | || |||||||||||||| || ||||| ||||| || || ||||| |||
Sbjct: 473 atagcatctaactcatacaacagaacttgataaaactggccctcgcttactccatctctg 414
Query: 879 tagaatat 886
|| |||||
Sbjct: 413 taaaatat 406
>gb|BG317563.1|BG317563 NXPV_003_C07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_003_C07 5' similar to Arabidopsis
thaliana sequence At1g48410 Argonaute protein AGO1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 332
Score = 143 bits (72), Expect = 2e-032
Identities = 186/224 (83%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
||||||||||| ||||||||||| || || || |||||||| ||||| || || || ||
Sbjct: 229 tctggctccatataaaaccgagcccgaaatgcagccagatgggcataatacgctgggggt 170
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| || || ||||| ||||||||||| ||||| |||||||| | |||||||| | |
Sbjct: 169 actatagaaactgaccgtgtgcacctcgcatatgtgtaacagagattgttggttaaggac 110
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
||||| |||||||| || |||||||| |||||||| |||||||||||||||||||| |
Sbjct: 109 tgcaatccatcagctgtgaatttgttttcatcccaaagaacatgataatgggcaggccta 50
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaa 637
|| ||||||||||| |||||||||||||| ||||| || |||||
Sbjct: 49 ctagttccctgaataccagcatggctgcagaggtaaaagtcaaa 6
>gb|DR053203.1|DR053203 RTCA1_9_D06.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_9_D06_A029 5', mRNA sequence
Length = 708
Score = 137 bits (69), Expect = 1e-030
Identities = 132/153 (86%)
Strand = Plus / Minus
Query: 542 atcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacggcttgttcc 601
|||||| || |||||||| |||||||| |||||||||||||||||||| | || |||||
Sbjct: 708 atcagctgtgaatttgttttcatcccaaagaacatgataatgggcaggcctactagttcc 649
Query: 602 ctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttga 661
|||||| |||||||||||||| ||||| || ||||| || |||||||||||||| || ||
Sbjct: 648 ctgaataccagcatggctgcagaggtaaaagtcaaattctgttggatggcaaattttgga 589
Query: 662 gtccaccacagtgcccggcagtatgttgccact 694
||||| |||||||| |||| |||||| |||||
Sbjct: 588 atccactacagtgcctggcaatatgtttccact 556
Score = 63.9 bits (32), Expect = 1e-008
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 759 accacgacaaaagtaactggaggctggtaatcagactccaatgatgcacaggcctttcta 818
||||| ||||||||||||||||| || |||| | || | |||||||||||||||| |
Sbjct: 491 accaccacaaaagtaactggaggttgataatttggttctagagatgcacaggcctttcga 432
Query: 819 atggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacaccatccctg 878
|| ||||| | || |||||||||||||| || ||||| ||||| || || ||||| |||
Sbjct: 431 atagcatctaactcatacaacagaacttgataaaactggccctcgcttactccatctctg 372
Query: 879 tagaatat 886
|| |||||
Sbjct: 371 taaaatat 364
>gb|DR097217.1|DR097217 STRR1_33_G07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_G07_A033 3', mRNA sequence
Length = 857
Score = 129 bits (65), Expect = 2e-028
Identities = 119/137 (86%)
Strand = Plus / Minus
Query: 561 tcatcccacagaacatgataatgggcaggacggcttgttccctgaatgccagcatggctg 620
||||||||||||||||||||||| || || | ||||||||||||||| |||||||| |||
Sbjct: 278 tcatcccacagaacatgataatgagctggcctgcttgttccctgaataccagcatgactg 219
Query: 621 cacaggtagaaatcaaactcggttggatggcaaatctttgagtccaccacagtgcccggc 680
|| |||||||||||||||||||||||||| ||||| | || || || ||||| || |||
Sbjct: 218 caaaggtagaaatcaaactcggttggatgacaaattgtggaatcaacaacagtacctggc 159
Query: 681 agtatgttgccacttct 697
| |||||| ||||||||
Sbjct: 158 aatatgttaccacttct 142
Score = 73.8 bits (37), Expect = 1e-011
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||| ||||| || |||||||| || || |||||||| ||||| ||||| ||||||
Sbjct: 425 tctggctctatgtagaagcgagctcgaaatgcagccagatgcgcataatatgctggagga 366
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaaca 514
|||||||| || ||||| || |||| ||||| ||||||||
Sbjct: 365 acgattgaaacggagcgagtacaccgagcatatgtgtaaca 325
>gb|DR177283.1|DR177283 RTMNUT1_4_H01.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_4_H01_A029 3', mRNA sequence
Length = 637
Score = 123 bits (62), Expect = 1e-026
Identities = 173/209 (82%), Gaps = 1/209 (0%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtat-gcaggagg 472
||||||||||| ||||||||||| || || || |||||||| ||||| || || || ||
Sbjct: 209 tctggctccatataaaaccgagcccgaaatgcagccagatgggcataatancgctggggg 150
Query: 473 aacgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagt 532
|| || || ||||| ||||||||||| ||||| |||||||| | |||||||| | |
Sbjct: 149 tactatagaaactgaccgtgtgcacctcgcatatgtgtaacagagattgttggttaagga 90
Query: 533 ttgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacg 592
||||| |||||||| || |||||||| |||||||| |||||||||||||||||||| |
Sbjct: 89 ctgcaatccatcagctgtgaatttgttttcatcccaaagaacatgataatgggcaggcct 30
Query: 593 gcttgttccctgaatgccagcatggctgc 621
|| ||||||||||| |||||||||||||
Sbjct: 29 actagttccctgaataccagcatggctgc 1
>gb|DR097306.1|DR097306 STRR1_33_G07.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_G07_A033 5', mRNA sequence
Length = 840
Score = 119 bits (60), Expect = 2e-025
Identities = 228/284 (80%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||| | ||| || |||||||| || || |||||||| ||||| ||||| ||||||
Sbjct: 609 tctggctctaagtagaagcgagctcgaaatgcagccagatgcgcataatatgctggagga 550
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|||||||| || ||||| || |||| ||||| |||||||| | || || || | ||
Sbjct: 549 acgattgaaacggagcgagtacaccgagcatatgtgtaacagagattatttgtcaaagac 490
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
||||| |||| || || ||| | || ||||||||||||||||||||||| || || |
Sbjct: 489 tgcaaagcatctgcagtgaatgtattatcatcccacagaacatgataatgagctggcgtg 430
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|||||||| ||||| |||||||| ||||| ||||||||||| || ||||||||||| |||
Sbjct: 429 cttgttccatgaataccagcatgactgcaaaggtagaaatctaattcggttggatgacaa 370
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccacttct 697
|| | || || || ||||| || |||| |||||| ||||||||
Sbjct: 369 attgtggaatcaacaacagtacctggcaatatgttaccacttct 326
>gb|BX679820.1|BX679820 BX679820 RS Pinus pinaster cDNA clone RS34D06, mRNA sequence
Length = 646
Score = 117 bits (59), Expect = 9e-025
Identities = 175/214 (81%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
||||||||||| ||||||||||| || || || |||||||| ||||| || || || |
Sbjct: 595 tctggctccatataaaaccgagcccgaaatgcagccagatgggcataatacgctggggtt 536
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| || || ||||| ||||||||||| ||||| |||||||| | |||||||| | |
Sbjct: 535 actatagaaactgaccgtgtgcacctcgcatatgtgtaacagagattgttggttaaggac 476
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
||||| |||||||| || |||||||| |||||||| || ||||||||||||||||| |
Sbjct: 475 tgcaatccatcagctgtgaatttgttttcatcccaaagnacatgataatgggcaggccta 416
Query: 594 cttgttccctgaatgccagcatggctgcacaggt 627
|| |||||||| || |||||||||||||| ||||
Sbjct: 415 ctagttccctggataccagcatggctgcagaggt 382
>gb|DR095290.1|DR095290 STRR1_20_C06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_20_C06_A033 3', mRNA sequence
Length = 806
Score = 117 bits (59), Expect = 9e-025
Identities = 86/95 (90%)
Strand = Plus / Minus
Query: 561 tcatcccacagaacatgataatgggcaggacggcttgttccctgaatgccagcatggctg 620
||||||||||||||||||||||| || || | ||||||||||||||| |||||||| |||
Sbjct: 319 tcatcccacagaacatgataatgagctggcctgcttgttccctgaataccagcatgactg 260
Query: 621 cacaggtagaaatcaaactcggttggatggcaaat 655
|| ||||||||||||||||| |||||||| |||||
Sbjct: 259 caaaggtagaaatcaaactctgttggatgacaaat 225
Score = 79.8 bits (40), Expect = 2e-013
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 395 agatccgctgtcacttgtatctggctccatgtaaaaccgagctcggaaggctgccagatg 454
|||||||||||| ||| |||||||| ||||| || |||||||| || || ||||||||
Sbjct: 485 agatccgctgtccgatgtttctggctctatgtagaagcgagctcgaaatgcagccagatg 426
Query: 455 agcatagtatgcaggaggaacgattgatactgagcgtgtgcacctggcatacgtgtaaca 514
||||| ||||| |||||||||||||| || ||||| || |||| ||||| ||||||||
Sbjct: 425 cgcataatatgctggaggaacgattgaaacggagcgagtacaccgagcatatgtgtaaca 366
>gb|DR053121.1|DR053121 RTCA1_9_D06.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_9_D06_A029 3', mRNA sequence
Length = 621
Score = 105 bits (53), Expect = 3e-021
Identities = 143/173 (82%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
||||||||||| ||||||||||| || || || |||||||| ||||| || || || ||
Sbjct: 173 tctggctccatataaaaccgagcccgaaatgcagccagatgggcataatacgctgggggt 114
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| || || ||||| ||||||||||| ||||| |||||||| | |||||||| | |
Sbjct: 113 actatagaaactgaccgtgtgcacctcgcatatgtgtaacagagattgttggttaaggac 54
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggc 586
||||| |||||||| || |||||||| |||||||| |||||||||||||||||
Sbjct: 53 tgcaatccatcagctgtgaatttgttttcatcccaaagaacatgataatgggc 1
>gb|CR392268.1|CR392268 CR392268 RN Pinus pinaster cDNA clone RN30B12, mRNA sequence
Length = 151
Score = 69.9 bits (35), Expect = 2e-010
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 612 gcatggctgcacaggtagaaatcaaactcggttggatggcaaatctttgagtccaccaca 671
||||||||||| ||||| || ||||| || |||||||||||||| || || ||||| |||
Sbjct: 151 gcatggctgcagaggtaaaagtcaaattctgttggatggcaaattttggaatccactaca 92
Query: 672 gtgcccggcagtatgttgccact 694
||||| |||| |||||| |||||
Sbjct: 91 gtgcctggcaatatgtttccact 69
>gb|DR095364.1|DR095364 STRR1_20_C06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_20_C06_A033 5', mRNA sequence
Length = 870
Score = 69.9 bits (35), Expect = 2e-010
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 843 acttggtagaactgtccctcactgacaccatccctgtagaatatgatcctcttgggttt 901
|||||||| ||||| |||||||| |||||||| |||||||| ||||||||||| |||||
Sbjct: 633 acttggtaaaactgcccctcacttacaccatctctgtagaagatgatcctcttaggttt 575
Score = 61.9 bits (31), Expect = 5e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 609 ccagcatggctgcacaggtagaaatcaaactcggttggatggcaaat 655
|||||||| ||||| ||||||||||||||||| |||||||| |||||
Sbjct: 867 ccagcatgactgcaaaggtagaaatcaaactctgttggatgacaaat 821
>gb|CF389628.1|CF389628 RTDR2_8_B11.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_8_B11_A021 5', mRNA
sequence
Length = 744
Score = 63.9 bits (32), Expect = 1e-008
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 759 accacgacaaaagtaactggaggctggtaatcagactccaatgatgcacaggcctttcta 818
||||| ||||||||||||||||| || |||| | || | |||||||||||||||| |
Sbjct: 627 accaccacaaaagtaactggaggttgataatttggttctagagatgcacaggcctttcga 568
Query: 819 atggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacaccatccctg 878
|| ||||| | || |||||||||||||| || ||||| ||||| || || ||||| |||
Sbjct: 567 atagcatctaactcatacaacagaacttgataaaactggccctcgcttactccatctctg 508
Query: 879 tagaatat 886
|| |||||
Sbjct: 507 taaaatat 500
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 642 gttggatggcaaatctttgagtccaccacagtgcccggcagtatgttgccact 694
|||||||||||||| || || ||||| |||||||| |||| |||||| |||||
Sbjct: 744 gttggatggcaaattttggaatccactacagtgcctggcaatatgtttccact 692
>gb|DT638906.1|DT638906 EST1153837 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHK80 3' end, mRNA sequence
Length = 819
Score = 63.9 bits (32), Expect = 1e-008
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 759 accacgacaaaagtaactggaggctggtaatcagactccaatgatgcacaggcctttcta 818
||||| ||||||||||||||||| || |||| | || | |||||||||||||||| |
Sbjct: 817 accaccacaaaagtaactggaggttgataatttggttctagagatgcacaggcctttcga 758
Query: 819 atggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacaccatccctg 878
|| ||||| | || |||||||||||||| || ||||| ||||| || || ||||| |||
Sbjct: 757 atagcatctaactcatacaacagaacttgataaaactggccctcgcttactccatctctg 698
Query: 879 tagaatat 886
|| |||||
Sbjct: 697 taaaatat 690
>gb|CO368589.1|CO368589 RTK1_41_C07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_41_C07_A029 5', mRNA sequence
Length = 741
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 614 atggctgcacaggtagaaatcaaact 639
|||||||||||| |||||||||||||
Sbjct: 160 atggctgcacagatagaaatcaaact 135
>gb|CX651686.1|CX651686 COLD1_54_D03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_D03_A029 3', mRNA sequence
Length = 686
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 614 atggctgcacaggtagaaatcaaact 639
|||||||||||| |||||||||||||
Sbjct: 391 atggctgcacagatagaaatcaaact 416
>gb|CX651761.1|CX651761 COLD1_54_D03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_D03_A029 5', mRNA sequence
Length = 722
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 614 atggctgcacaggtagaaatcaaact 639
|||||||||||| |||||||||||||
Sbjct: 644 atggctgcacagatagaaatcaaact 669
>gb|DR019332.1|DR019332 STRS1_29_F12.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_F12_A034 3', mRNA sequence
Length = 746
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 614 atggctgcacaggtagaaatcaaact 639
|||||||||||| |||||||||||||
Sbjct: 108 atggctgcacagatagaaatcaaact 83
>gb|DR081033.1|DR081033 RTFEPL1_26_H08.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_26_H08_A029 5', mRNA sequence
Length = 113
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 614 atggctgcacaggtagaaatcaaact 639
|||||||||||| |||||||||||||
Sbjct: 40 atggctgcacagatagaaatcaaact 15
>gb|DR694441.1|DR694441 EST1084533 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEC49 3' end, mRNA sequence
Length = 824
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 614 atggctgcacaggtagaaatcaaact 639
|||||||||||| |||||||||||||
Sbjct: 655 atggctgcacagatagaaatcaaact 630
>gb|DR694995.1|DR694995 EST1085088 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEJ27 3' end, mRNA sequence
Length = 863
Score = 44.1 bits (22), Expect = 0.011
Identities = 71/86 (82%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 801 gatgcacaggcctttctaatggcatcaagttcgtacaacagaacttggtagaactgtccc 860
||||||||| |||||| ||| ||||| | || |||||||||||||| || ||||| |||
Sbjct: 766 gatgcacag-cctttcgaatagcatctaactcatacaacagaacttgataaaactggccc 708
Query: 861 tcactgacaccatccctgtagaatat 886
|| || || ||||| ||||| |||||
Sbjct: 707 tcgcttactccatctctgtaaaatat 682
>gb|CO165762.1|CO165762 FLD1_56_G11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_56_G11_A029 5', mRNA sequence
Length = 844
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 861 tcactgacaccatccctgta 880
||||||||||||||||||||
Sbjct: 174 tcactgacaccatccctgta 155
>gb|DR012422.1|DR012422 HEAT1_12_E12.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_12_E12_A029 5', mRNA sequence
Length = 480
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 861 tcactgacaccatccctgta 880
||||||||||||||||||||
Sbjct: 105 tcactgacaccatccctgta 86
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 99,807
Number of Sequences: 355925
Number of extensions: 99807
Number of successful extensions: 26304
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26190
Number of HSP's gapped (non-prelim): 95
length of query: 977
length of database: 217,277,237
effective HSP length: 19
effective length of query: 958
effective length of database: 210,514,662
effective search space: 201673046196
effective search space used: 201673046196
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)