BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665525.2.1
(620 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ696389.1|BQ696389 NXPV_040_F05_F NXPV (Nsf Xylem Plani... 50 1e-004
gb|DR109699.1|DR109699 RTS1_4_C10.b1_A029 Roots minus sulfu... 50 1e-004
gb|DR693981.1|DR693981 EST1084071 Normalized pine embryo li... 50 1e-004
gb|DR694977.1|DR694977 EST1085070 Normalized pine embryo li... 50 1e-004
gb|DT638989.1|DT638989 EST1153920 Normalized pine embryo li... 50 1e-004
gb|AI812969.1|AI812969 2B5 Pine Lambda Zap Xylem library Pi... 46 0.002
gb|BI397792.1|BI397792 NXPV_107_E10_F NXPV (Nsf Xylem Plani... 44 0.007
gb|CX649110.1|CX649110 COLD1_33_C05.b1_A029 Root cold Pinus... 42 0.026
>gb|BQ696389.1|BQ696389 NXPV_040_F05_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_040_F05 5' similar to Arabidopsis
thaliana sequence At3g14960 galactosyltransferase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 456
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 387 tcatggttgacgttcatagcaagcatcca 415
||||||||||| |||||||||||||||||
Sbjct: 212 tcatggttgacattcatagcaagcatcca 184
>gb|DR109699.1|DR109699 RTS1_4_C10.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_4_C10_A029 3', mRNA sequence
Length = 808
Score = 50.1 bits (25), Expect = 1e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 564 tcataccatttcaacttaggatcagtaaaaacaggccccttcttcatgcatcc 616
||||||||||||||||||||||| || | ||| || || || |||||||||||
Sbjct: 629 tcataccatttcaacttaggatcggtgataactggaccttttttcatgcatcc 681
>gb|DR693981.1|DR693981 EST1084071 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE664 3' end, mRNA sequence
Length = 817
Score = 50.1 bits (25), Expect = 1e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 564 tcataccatttcaacttaggatcagtaaaaacaggccccttcttcatgcatcc 616
||||||||||||||||||||||| || | ||| || || || |||||||||||
Sbjct: 499 tcataccatttcaacttaggatcggtgataactggaccttttttcatgcatcc 447
>gb|DR694977.1|DR694977 EST1085070 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEJ07 3' end, mRNA sequence
Length = 793
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 387 tcatggttgacgttcatagcaagcatcca 415
||||||||||| |||||||||||||||||
Sbjct: 452 tcatggttgacattcatagcaagcatcca 424
Score = 42.1 bits (21), Expect = 0.026
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 564 tcataccatttcaacttaggatcagtaaaaacaggccccttcttcatgcatcc 616
||||||||||| || |||||||| | ||||| || ||||| |||||||||||
Sbjct: 275 tcataccattttaatttaggatctctgaaaaccggaccctttttcatgcatcc 223
>gb|DT638989.1|DT638989 EST1153920 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHL79 3' end, mRNA sequence
Length = 850
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 387 tcatggttgacgttcatagcaagcatcca 415
||||||||||| |||||||||||||||||
Sbjct: 460 tcatggttgacattcatagcaagcatcca 432
Score = 42.1 bits (21), Expect = 0.026
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 564 tcataccatttcaacttaggatcagtaaaaacaggccccttcttcatgcatcc 616
||||||||||| || |||||||| | ||||| || ||||| |||||||||||
Sbjct: 283 tcataccattttaatttaggatctctgaaaaccggaccctttttcatgcatcc 231
>gb|AI812969.1|AI812969 2B5 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 649
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 564 tcataccatttcaacttaggatc 586
|||||||||||||||||||||||
Sbjct: 552 tcataccatttcaacttaggatc 530
>gb|BI397792.1|BI397792 NXPV_107_E10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_107_E10 5' similar to Arabidopsis
thaliana sequence At3g14960 galactosyltransferase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 267
Score = 44.1 bits (22), Expect = 0.007
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 387 tcatggttgacgttcatagcaagcatcca 415
||||||||||| |||||||| ||||||||
Sbjct: 219 tcatggttgacattcatagcnagcatcca 191
>gb|CX649110.1|CX649110 COLD1_33_C05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_33_C05_A029 3', mRNA sequence
Length = 689
Score = 42.1 bits (21), Expect = 0.026
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 564 tcataccatttcaacttaggatcagtaaaaacaggccccttcttcatgcatcc 616
||||||||||| || |||||||| | ||||| || ||||| |||||||||||
Sbjct: 33 tcataccattttaatttaggatctctgaaaaccggaccctttttcatgcatcc 85
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 57,783
Number of Sequences: 355925
Number of extensions: 57783
Number of successful extensions: 14720
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14708
Number of HSP's gapped (non-prelim): 12
length of query: 620
length of database: 217,277,237
effective HSP length: 19
effective length of query: 601
effective length of database: 210,514,662
effective search space: 126519311862
effective search space used: 126519311862
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)