BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665490.2.1
(1289 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF517269.1|BF517269 NXSI_012_D08_F NXSI (Nsf Xylem Side ... 86 4e-015
gb|BF518189.1|BF518189 NXSI_036_B07_F NXSI (Nsf Xylem Side ... 86 4e-015
gb|BQ701389.1|BQ701389 NXSI_063_F02_F NXSI (Nsf Xylem Side ... 86 4e-015
gb|CF386018.1|CF386018 RTDR1_7_A02.g1_A015 Loblolly pine ro... 86 4e-015
gb|CF387177.1|CF387177 RTDR1_11_E10.b1_A015 Loblolly pine r... 86 4e-015
gb|CF387203.1|CF387203 RTDR1_11_E10.g1_A015 Loblolly pine r... 86 4e-015
gb|CF663967.1|CF663967 RTCNT1_6_G11.b1_A029 Root control Pi... 86 4e-015
gb|CF664028.1|CF664028 RTCNT1_6_G11.g1_A029 Root control Pi... 86 4e-015
gb|CF664227.1|CF664227 RTCNT1_8_F11.b1_A029 Root control Pi... 86 4e-015
gb|CF665719.1|CF665719 RTCNT1_18_B06.b1_A029 Root control P... 86 4e-015
gb|CF665795.1|CF665795 RTCNT1_18_B06.g1_A029 Root control P... 86 4e-015
gb|CO162242.1|CO162242 FLD1_34_C07.b1_A029 Root flooded Pin... 86 4e-015
gb|CO162320.1|CO162320 FLD1_34_C07.g1_A029 Root flooded Pin... 86 4e-015
gb|CX648211.1|CX648211 COLD1_27_F01.b1_A029 Root cold Pinus... 86 4e-015
gb|CX648292.1|CX648292 COLD1_27_F01.g1_A029 Root cold Pinus... 86 4e-015
gb|CX652195.1|CX652195 COLD1_57_C07.g1_A029 Root cold Pinus... 86 4e-015
gb|CX652925.1|CX652925 COLD1_62_G10.b1_A029 Root cold Pinus... 86 4e-015
gb|DR016968.1|DR016968 STRS1_13_F06.b1_A034 Shoot tip pitch... 86 4e-015
gb|DR017052.1|DR017052 STRS1_13_F06.g1_A034 Shoot tip pitch... 86 4e-015
gb|DR025391.1|DR025391 STRS1_71_H02.b1_A034 Shoot tip pitch... 86 4e-015
gb|DR072755.1|DR072755 RTDK1_28_H05.b1_A029 Roots, dark Pin... 86 4e-015
gb|DR094864.1|DR094864 STRR1_17_F11.b1_A033 Stem Response R... 86 4e-015
gb|DR094945.1|DR094945 STRR1_17_F11.g1_A033 Stem Response R... 86 4e-015
gb|DR097209.1|DR097209 STRR1_33_F08.b1_A033 Stem Response R... 86 4e-015
gb|DR097295.1|DR097295 STRR1_33_F08.g3_A033 Stem Response R... 86 4e-015
gb|DR098382.1|DR098382 STRR1_45_D06.b1_A033 Stem Response R... 86 4e-015
gb|BF777798.1|BF777798 NXSI_075_G10_F NXSI (Nsf Xylem Side ... 82 6e-014
gb|CX653010.1|CX653010 COLD1_62_G10.g1_A029 Root cold Pinus... 82 6e-014
gb|BF518169.1|BF518169 NXSI_035_H09_F NXSI (Nsf Xylem Side ... 76 4e-012
gb|CO165364.1|CO165364 FLD1_54_C07.b1_A029 Root flooded Pin... 66 4e-009
gb|CO165441.1|CO165441 FLD1_54_C07.g1_A029 Root flooded Pin... 66 4e-009
gb|DR019291.1|DR019291 STRS1_29_B01.b1_A034 Shoot tip pitch... 66 4e-009
gb|DR050153.1|DR050153 RTBOR1_21_D02.g1_A029 Roots plus add... 66 4e-009
gb|CO159243.1|CO159243 FLD1_12_H06.b1_A029 Root flooded Pin... 62 6e-008
gb|CO159324.1|CO159324 FLD1_12_H06.g1_A029 Root flooded Pin... 62 6e-008
gb|CO164700.1|CO164700 FLD1_49_E11.g1_A029 Root flooded Pin... 62 6e-008
gb|CO201148.1|CO201148 RTCNT2_4_A02.b1_A029 Root control 2 ... 62 6e-008
gb|CO201226.1|CO201226 RTCNT2_4_A02.g1_A029 Root control 2 ... 62 6e-008
gb|DR099384.1|DR099384 STRR1_55_E12.b1_A033 Stem Response R... 62 6e-008
gb|DR099394.1|DR099394 STRR1_55_F12.b1_A033 Stem Response R... 62 6e-008
gb|DR163463.1|DR163463 RTFE1_43_C04.b1_A029 Roots minus iro... 62 6e-008
gb|DR682260.1|DR682260 EST1072335 Normalized pine embryo li... 62 6e-008
gb|DR688664.1|DR688664 EST1078749 Normalized pine embryo li... 62 6e-008
gb|DT634886.1|DT634886 EST1149817 Normalized pine embryo li... 62 6e-008
gb|BF778968.1|BF778968 NXSI_091_E05_F NXSI (Nsf Xylem Side ... 58 9e-007
gb|DR096015.1|DR096015 STRR1_25_E03.b1_A033 Stem Response R... 58 9e-007
gb|DR096092.1|DR096092 STRR1_25_E03.g1_A033 Stem Response R... 58 9e-007
gb|DT630985.1|DT630985 EST1145916 Normalized pine embryo li... 56 4e-006
gb|CF386544.1|CF386544 RTDR1_15_C07.b1_A015 Loblolly pine r... 52 6e-005
gb|CF665191.1|CF665191 RTCNT1_14_A12.g1_A029 Root control P... 50 2e-004
gb|CR393302.1|CR393302 CR393302 RN Pinus pinaster cDNA clon... 50 2e-004
gb|CO171802.1|CO171802 NDL1_24_E05.g1_A029 Needles control ... 50 2e-004
gb|CO173926.1|CO173926 NDL1_40_A08.g1_A029 Needles control ... 50 2e-004
gb|DR016861.1|DR016861 STRS1_12_D06.g1_A034 Shoot tip pitch... 50 2e-004
gb|DR019353.1|DR019353 STRS1_29_B01.g1_A034 Shoot tip pitch... 50 2e-004
gb|DR019654.1|DR019654 STRS1_31_B07.g1_A034 Shoot tip pitch... 50 2e-004
gb|DR050073.1|DR050073 RTBOR1_21_D02.b1_A029 Roots plus add... 50 2e-004
gb|DR092479.1|DR092479 STRR1_1_D06.g1_A033 Stem Response Re... 50 2e-004
gb|DR095060.1|DR095060 STRR1_18_C01.g1_A033 Stem Response R... 50 2e-004
gb|DR098171.1|DR098171 STRR1_39_C08.g1_A033 Stem Response R... 50 2e-004
gb|DR161649.1|DR161649 RTFE1_13_C09.b1_A029 Roots minus iro... 50 2e-004
gb|DR166815.1|DR166815 RTPHOS1_14_E01.g1_A029 Roots minus p... 50 2e-004
gb|DR388727.1|DR388727 RTHG1_30_D05.b1_A029 Roots plus adde... 50 2e-004
gb|DR744454.1|DR744454 RTCU1_22_C07.g1_A029 Roots plus adde... 50 2e-004
dbj|BD224564.1| Materials and methods for the modification ... 50 2e-004
gb|CZ895070.1|CZ895070 204_1_12063805_3_37678_081 Pine meth... 48 0.001
gb|CF385091.1|CF385091 RTDR1_1_H08.g1_A015 Loblolly pine ro... 48 0.001
gb|CF386345.1|CF386345 RTDR1_13_H08.g1_A015 Loblolly pine r... 48 0.001
gb|CF387078.1|CF387078 RTDR1_10_H09.g1_A015 Loblolly pine r... 48 0.001
gb|CF387597.1|CF387597 RTDR1_20_H12.g1_A015 Loblolly pine r... 48 0.001
gb|CF387636.1|CF387636 RTDR1_19_C02.b1_A015 Loblolly pine r... 48 0.001
gb|CF391571.1|CF391571 RTDR3_9_C02.g1_A022 Loblolly pine ro... 48 0.001
gb|CF400173.1|CF400173 RTWW1_3_F07.g1_A015 Well-watered lob... 48 0.001
gb|CF401192.1|CF401192 RTWW1_10_H07.g1_A015 Well-watered lo... 48 0.001
gb|CF476953.1|CF476953 RTWW3_4_G10.g1_A022 Well-watered lob... 48 0.001
gb|BX679072.1|BX679072 BX679072 RS Pinus pinaster cDNA clon... 48 0.001
gb|DR021427.1|DR021427 STRS1_44_C09.g1_A034 Shoot tip pitch... 48 0.001
gb|DR088958.1|DR088958 RTAL1_5_E09.g1_A029 Roots plus added... 48 0.001
gb|DR099898.1|DR099898 STRR1_59_E08.g1_A033 Stem Response R... 48 0.001
gb|DR102256.1|DR102256 STRR1_79_E02.g1_A033 Stem Response R... 48 0.001
gb|DR742871.1|DR742871 RTCU1_7_C01.g2_A029 Roots plus added... 48 0.001
gb|BG040407.1|BG040407 NXSI_107_H09_F NXSI (Nsf Xylem Side ... 46 0.004
gb|CF384952.1|CF384952 RTDR1_1_B07.b1_A015 Loblolly pine ro... 46 0.004
gb|CF386497.1|CF386497 RTDR1_14_C02.g1_A015 Loblolly pine r... 46 0.004
gb|CF388515.1|CF388515 RTDR2_3_F02.g1_A021 Loblolly pine ro... 46 0.004
gb|CF390326.1|CF390326 RTDR2_18_B09.g1_A021 Loblolly pine r... 46 0.004
gb|CF402040.1|CF402040 RTWW1_16_F12.g1_A015 Well-watered lo... 46 0.004
gb|CF402460.1|CF402460 RTWW1_17_A06.g1_A015 Well-watered lo... 46 0.004
gb|CF402767.1|CF402767 RTWW1_22_E05.g1_A015 Well-watered lo... 46 0.004
gb|CF402938.1|CF402938 RTWW1_23_F01.g1_A015 Well-watered lo... 46 0.004
gb|CF403089.1|CF403089 RTWW1_24_F04.g1_A015 Well-watered lo... 46 0.004
gb|CF470435.1|CF470435 RTDS1_17_F06.g1_A015 Drought-stresse... 46 0.004
gb|CF475874.1|CF475874 RTWW2_15_B12.g1_A021 Well-watered lo... 46 0.004
gb|CF478836.1|CF478836 RTWW3_15_F06.g1_A022 Well-watered lo... 46 0.004
gb|CF479061.1|CF479061 RTWW3_21_H03.g1_A022 Well-watered lo... 46 0.004
gb|CF667757.1|CF667757 RTCNT1_32_H01.b1_A029 Root control P... 46 0.004
gb|BX681393.1|BX681393 BX681393 RS Pinus pinaster cDNA clon... 46 0.004
gb|CR394449.1|CR394449 CR394449 RN Pinus pinaster cDNA clon... 46 0.004
gb|CO159641.1|CO159641 FLD1_14_G12.g1_A029 Root flooded Pin... 46 0.004
gb|CO161433.1|CO161433 FLD1_28_F07.g1_A029 Root flooded Pin... 46 0.004
gb|CO364892.1|CO364892 RTK1_22_A03.g1_A029 Roots minus pota... 46 0.004
gb|DR019550.1|DR019550 STRS1_30_G04.g1_A034 Shoot tip pitch... 46 0.004
gb|DR020775.1|DR020775 STRS1_39_E10.b1_A034 Shoot tip pitch... 46 0.004
gb|DR022365.1|DR022365 STRS1_50_C09.g1_A034 Shoot tip pitch... 46 0.004
gb|DR025249.1|DR025249 STRS1_70_B07.g1_A034 Shoot tip pitch... 46 0.004
gb|DR052223.1|DR052223 RTCA1_3_E07.b1_A029 Roots minus calc... 46 0.004
gb|DR054873.1|DR054873 RTCA1_20_C08.b1_A029 Roots minus cal... 46 0.004
gb|DR060771.1|DR060771 RTNIT1_29_H11.g1_A029 Roots minus ni... 46 0.004
gb|DR069584.1|DR069584 RTDK1_8_D05.b1_A029 Roots, dark Pinu... 46 0.004
gb|DR071732.1|DR071732 RTDK1_21_F07.g1_A029 Roots, dark Pin... 46 0.004
gb|DR071993.1|DR071993 RTDK1_23_H07.b1_A029 Roots, dark Pin... 46 0.004
gb|DR072085.1|DR072085 RTDK1_24_B05.b1_A029 Roots, dark Pin... 46 0.004
gb|DR089676.1|DR089676 RTAL1_10_D10.b1_A029 Roots plus adde... 46 0.004
gb|DR089697.1|DR089697 RTAL1_10_F08.b1_A029 Roots plus adde... 46 0.004
gb|DR090620.1|DR090620 RTAL1_16_G09.b1_A029 Roots plus adde... 46 0.004
gb|DR091303.1|DR091303 RTAL1_20_E06.g1_A029 Roots plus adde... 46 0.004
gb|DR093384.1|DR093384 STRR1_7_H12.g1_A033 Stem Response Re... 46 0.004
gb|DR099196.1|DR099196 STRR1_53_F12.g1_A033 Stem Response R... 46 0.004
gb|DR161127.1|DR161127 RTFE1_10_B04.b1_A029 Roots minus iro... 46 0.004
gb|DR166827.1|DR166827 RTPHOS1_14_F03.g1_A029 Roots minus p... 46 0.004
gb|DR388706.1|DR388706 RTHG1_30_B04.b1_A029 Roots plus adde... 46 0.004
gb|AF291667.1|AF291667 Pinus sylvestris class III peroxidas... 46 0.004
dbj|BD224457.1| Materials and methods for the modification ... 46 0.004
dbj|BD224458.1| Materials and methods for the modification ... 46 0.004
gb|BX680771.1|BX680771 BX680771 RS Pinus pinaster cDNA clon... 44 0.014
gb|CX650746.1|CX650746 COLD1_47_G06.g1_A029 Root cold Pinus... 44 0.014
gb|DR053196.1|DR053196 RTCA1_9_C11.g1_A029 Roots minus calc... 44 0.014
gb|DR090841.1|DR090841 RTAL1_17_E07.g1_A029 Roots plus adde... 44 0.014
gb|AA556933.1|AA556933 775 Loblolly pine C Pinus taeda cDNA... 42 0.056
gb|AL750501.1|AL750501 AL750501 RN Pinus pinaster cDNA clon... 42 0.056
gb|BM367358.1|BM367358 NXLV_048_B09_F NXLV (Nsf Xylem Late ... 42 0.056
gb|BQ701419.1|BQ701419 NXSI_063_G08_F NXSI (Nsf Xylem Side ... 42 0.056
gb|BQ703097.1|BQ703097 NXSI_136_D10_F NXSI (Nsf Xylem Side ... 42 0.056
gb|CF385526.1|CF385526 RTDR1_4_H07.g1_A015 Loblolly pine ro... 42 0.056
gb|CF385702.1|CF385702 RTDR1_5_C11.g1_A015 Loblolly pine ro... 42 0.056
gb|CF385922.1|CF385922 RTDR1_7_A02.b1_A015 Loblolly pine ro... 42 0.056
gb|CF386338.1|CF386338 RTDR1_13_E09.g1_A015 Loblolly pine r... 42 0.056
gb|CR393261.1|CR393261 CR393261 RN Pinus pinaster cDNA clon... 42 0.056
gb|CO159824.1|CO159824 FLD1_16_E07.b1_A029 Root flooded Pin... 42 0.056
gb|DR021011.1|DR021011 STRS1_40_F08.g1_A034 Shoot tip pitch... 42 0.056
gb|DR025482.1|DR025482 STRS1_71_H02.g1_A034 Shoot tip pitch... 42 0.056
gb|DR054185.1|DR054185 RTCA1_15_F05.g1_A029 Roots minus cal... 42 0.056
gb|DR081714.1|DR081714 RTFEPL1_31_E05.g1_A029 Roots plus ad... 42 0.056
gb|DR096972.1|DR096972 STRR1_31_D02.g1_A033 Stem Response R... 42 0.056
gb|DR099813.1|DR099813 STRR1_58_F12.g1_A033 Stem Response R... 42 0.056
gb|DR102098.1|DR102098 STRR1_78_A01.g1_A033 Stem Response R... 42 0.056
gb|DR687396.1|DR687396 EST1077478 Normalized pine embryo li... 42 0.056
gb|DR689651.1|DR689651 EST1079737 Normalized pine embryo li... 42 0.056
gb|DT635728.1|DT635728 EST1150659 Normalized pine embryo li... 42 0.056
gb|CF666909.1|CF666909 RTCNT1_27_A03.b1_A029 Root control P... 40 0.22
gb|CO160586.1|CO160586 FLD1_22_C09.b1_A029 Root flooded Pin... 40 0.22
gb|CO200658.1|CO200658 GEO2_8_F02.g1_A032 Root gravitropism... 40 0.22
gb|DR015598.1|DR015598 STRS1_4_B03.g1_A034 Shoot tip pitch ... 40 0.22
gb|DR017779.1|DR017779 STRS1_18_A07.g1_A034 Shoot tip pitch... 40 0.22
gb|DR017780.1|DR017780 STRS1_18_A08.g1_A034 Shoot tip pitch... 40 0.22
gb|DR022419.1|DR022419 STRS1_51_A03.b1_A034 Shoot tip pitch... 40 0.22
gb|DR022489.1|DR022489 STRS1_51_A03.g1_A034 Shoot tip pitch... 40 0.22
gb|DR090761.1|DR090761 RTAL1_17_E07.b1_A029 Roots plus adde... 40 0.22
gb|DR385687.1|DR385687 RTHG1_10_E09.b1_A029 Roots plus adde... 40 0.22
gb|DR385763.1|DR385763 RTHG1_10_E09.g1_A029 Roots plus adde... 40 0.22
gb|DR686286.1|DR686286 EST1076364 Normalized pine embryo li... 40 0.22
gb|DR743557.1|DR743557 RTCU1_16_E06.g1_A029 Roots plus adde... 40 0.22
gb|DT633320.1|DT633320 EST1148251 Normalized pine embryo li... 40 0.22
dbj|BD224560.1| Materials and methods for the modification ... 40 0.22
dbj|BD224568.1| Materials and methods for the modification ... 40 0.22
>gb|BF517269.1|BF517269 NXSI_012_D08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_012_D08 5' similar to Arabidopsis thaliana
sequence At1g71695 peroxidase ATP4a see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 435
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 223 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 164
Query: 472 gtgcgga 478
|||||||
Sbjct: 163 gtgcgga 157
>gb|BF518189.1|BF518189 NXSI_036_B07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_036_B07 5' similar to Arabidopsis thaliana
sequence At1g71695 peroxidase ATP4a see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 520
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 223 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 164
Query: 472 gtgcgga 478
|||||||
Sbjct: 163 gtgcgga 157
>gb|BQ701389.1|BQ701389 NXSI_063_F02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_063_F02 5' similar to Arabidopsis thaliana
sequence At1g71695 peroxidase ATP4a see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 525
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 223 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 164
Query: 472 gtgcgga 478
|||||||
Sbjct: 163 gtgcgga 157
>gb|CF386018.1|CF386018 RTDR1_7_A02.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_7_A02_A015 5', mRNA
sequence
Length = 641
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 479 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 538
Query: 472 gtgcgga 478
|||||||
Sbjct: 539 gtgcgga 545
>gb|CF387177.1|CF387177 RTDR1_11_E10.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_11_E10_A015 3', mRNA
sequence
Length = 480
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 67 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 8
Query: 472 gtgcgga 478
|||||||
Sbjct: 7 gtgcgga 1
>gb|CF387203.1|CF387203 RTDR1_11_E10.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_11_E10_A015 5', mRNA
sequence
Length = 765
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 620 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 561
Query: 472 gtgcgga 478
|||||||
Sbjct: 560 gtgcgga 554
Score = 42.1 bits (21), Expect = 0.056
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 980 cgtcgcagccctgcacgaagcagtcgtggaagtggag 1016
|||| |||||||| ||||| ||||||||||| |||||
Sbjct: 52 cgtcacagccctgaacgaaacagtcgtggaaatggag 16
>gb|CF663967.1|CF663967 RTCNT1_6_G11.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_6_G11_A029 3', mRNA sequence
Length = 654
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 234 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 175
Query: 472 gtgcgga 478
|||||||
Sbjct: 174 gtgcgga 168
>gb|CF664028.1|CF664028 RTCNT1_6_G11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_6_G11_A029 5', mRNA sequence
Length = 473
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 445 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 386
Query: 472 gtgcgga 478
|||||||
Sbjct: 385 gtgcgga 379
>gb|CF664227.1|CF664227 RTCNT1_8_F11.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_8_F11_A029 3', mRNA sequence
Length = 663
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 243 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 184
Query: 472 gtgcgga 478
|||||||
Sbjct: 183 gtgcgga 177
>gb|CF665719.1|CF665719 RTCNT1_18_B06.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_18_B06_A029 3', mRNA sequence
Length = 706
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 286 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 227
Query: 472 gtgcgga 478
|||||||
Sbjct: 226 gtgcgga 220
>gb|CF665795.1|CF665795 RTCNT1_18_B06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_18_B06_A029 5', mRNA sequence
Length = 510
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 473 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 414
Query: 472 gtgcgga 478
|||||||
Sbjct: 413 gtgcgga 407
>gb|CO162242.1|CO162242 FLD1_34_C07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_C07_A029 3', mRNA sequence
Length = 591
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 169 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 110
Query: 472 gtgcgga 478
|||||||
Sbjct: 109 gtgcgga 103
>gb|CO162320.1|CO162320 FLD1_34_C07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_C07_A029 5', mRNA sequence
Length = 769
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 478 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 419
Query: 472 gtgcgga 478
|||||||
Sbjct: 418 gtgcgga 412
>gb|CX648211.1|CX648211 COLD1_27_F01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_27_F01_A029 3', mRNA sequence
Length = 784
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 363 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 304
Query: 472 gtgcgga 478
|||||||
Sbjct: 303 gtgcgga 297
>gb|CX648292.1|CX648292 COLD1_27_F01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_27_F01_A029 5', mRNA sequence
Length = 867
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 852 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 793
Query: 472 gtgcgga 478
|||||||
Sbjct: 792 gtgcgga 786
Score = 42.1 bits (21), Expect = 0.056
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 980 cgtcgcagccctgcacgaagcagtcgtggaagtggag 1016
|||| |||||||| ||||| ||||||||||| |||||
Sbjct: 287 cgtcacagccctgaacgaaacagtcgtggaaatggag 251
>gb|CX652195.1|CX652195 COLD1_57_C07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_57_C07_A029 5', mRNA sequence
Length = 673
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 435 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 494
Query: 472 gtgcgga 478
|||||||
Sbjct: 495 gtgcgga 501
>gb|CX652925.1|CX652925 COLD1_62_G10.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_G10_A029 3', mRNA sequence
Length = 663
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 242 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 183
Query: 472 gtgcgga 478
|||||||
Sbjct: 182 gtgcgga 176
>gb|DR016968.1|DR016968 STRS1_13_F06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_13_F06_A034 3', mRNA sequence
Length = 822
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 401 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 342
Query: 472 gtgcgga 478
|||||||
Sbjct: 341 gtgcgga 335
>gb|DR017052.1|DR017052 STRS1_13_F06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_13_F06_A034 5', mRNA sequence
Length = 736
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 601 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 542
Query: 472 gtgcgga 478
|||||||
Sbjct: 541 gtgcgga 535
>gb|DR025391.1|DR025391 STRS1_71_H02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_71_H02_A034 3', mRNA sequence
Length = 846
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 425 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 366
Query: 472 gtgcgga 478
|||||||
Sbjct: 365 gtgcgga 359
>gb|DR072755.1|DR072755 RTDK1_28_H05.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_28_H05_A029 3', mRNA sequence
Length = 538
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 120 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 61
Query: 472 gtgcgga 478
|||||||
Sbjct: 60 gtgcgga 54
>gb|DR094864.1|DR094864 STRR1_17_F11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_17_F11_A033 3', mRNA sequence
Length = 816
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 425 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 366
Query: 472 gtgcgga 478
|||||||
Sbjct: 365 gtgcgga 359
>gb|DR094945.1|DR094945 STRR1_17_F11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_17_F11_A033 5', mRNA sequence
Length = 888
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 540 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 481
Query: 472 gtgcgga 478
|||||||
Sbjct: 480 gtgcgga 474
>gb|DR097209.1|DR097209 STRR1_33_F08.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_F08_A033 3', mRNA sequence
Length = 812
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 392 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 333
Query: 472 gtgcgga 478
|||||||
Sbjct: 332 gtgcgga 326
>gb|DR097295.1|DR097295 STRR1_33_F08.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_F08_A033 5', mRNA sequence
Length = 859
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 536 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 477
Query: 472 gtgcgga 478
|||||||
Sbjct: 476 gtgcgga 470
>gb|DR098382.1|DR098382 STRR1_45_D06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_45_D06_A033 3', mRNA sequence
Length = 681
Score = 85.7 bits (43), Expect = 4e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||
Sbjct: 290 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggc 231
Query: 472 gtgcgga 478
|||||||
Sbjct: 230 gtgcgga 224
>gb|BF777798.1|BF777798 NXSI_075_G10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_075_G10 5' similar to Arabidopsis thaliana
sequence At1g71695 peroxidase ATP4a see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 369
Score = 81.8 bits (41), Expect = 6e-014
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | ||||| ||||| ||||||||||||||| ||||||||
Sbjct: 223 gtgaacaggccctcccggttcatcaggtnnacgtaatacttgttgtcgaagacgttgggc 164
Query: 472 gtgcgga 478
|||||||
Sbjct: 163 gtgcgga 157
>gb|CX653010.1|CX653010 COLD1_62_G10.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_G10_A029 5', mRNA sequence
Length = 843
Score = 81.8 bits (41), Expect = 6e-014
Identities = 56/61 (91%)
Strand = Plus / Minus
Query: 418 aggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggcgtgcgg 477
|||||||||||||| | |||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct: 841 aggccctcccggttcatcaggtctacgtaatacttgttgtcgaagacgttgggcgtgcgg 782
Query: 478 a 478
|
Sbjct: 781 a 781
Score = 42.1 bits (21), Expect = 0.056
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 980 cgtcgcagccctgcacgaagcagtcgtggaagtggag 1016
|||| |||||||| ||||| ||||||||||| |||||
Sbjct: 94 cgtcacagccctgaacgaaacagtcgtggaaatggag 58
>gb|BF518169.1|BF518169 NXSI_035_H09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_035_H09 5' similar to Arabidopsis thaliana
sequence At1g71695 peroxidase ATP4a see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 315
Score = 75.8 bits (38), Expect = 4e-012
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||||||| | |||| ||||| ||||||||||||||| ||||||||
Sbjct: 223 gtgaacaggccctcccggttcatcaggnnnacgtaatacttgttgtcgaagacgttgggc 164
Query: 472 gtgcgga 478
|||||||
Sbjct: 163 gtgcgga 157
>gb|CO165364.1|CO165364 FLD1_54_C07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_54_C07_A029 3', mRNA sequence
Length = 764
Score = 65.9 bits (33), Expect = 4e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||| ||| | |||||| ||||| |||||||||||||| ||||||||
Sbjct: 155 gtgaacaggccctccctgttcatcaggtctacgtaatacttgttgtcgaacacgttgggc 96
Query: 472 gtgcg 476
|||||
Sbjct: 95 gtgcg 91
>gb|CO165441.1|CO165441 FLD1_54_C07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_54_C07_A029 5', mRNA sequence
Length = 868
Score = 65.9 bits (33), Expect = 4e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||| ||| | |||||| ||||| |||||||||||||| ||||||||
Sbjct: 733 gtgaacaggccctccctgttcatcaggtctacgtaatacttgttgtcgaacacgttgggc 674
Query: 472 gtgcg 476
|||||
Sbjct: 673 gtgcg 669
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 980 cgtcgcagccctgcacgaagcagtcgtggaagtggag 1016
|||| |||||||| ||||||||||||||||| |||||
Sbjct: 165 cgtcacagccctgaacgaagcagtcgtggaaatggag 129
>gb|DR019291.1|DR019291 STRS1_29_B01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_B01_A034 3', mRNA sequence
Length = 791
Score = 65.9 bits (33), Expect = 4e-009
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||| ||| | |||||| ||||| |||||||||||||| ||||||||
Sbjct: 403 gtgaacaggccctccctgttcatcaggtctacgtaatacttgttgtcgaacacgttgggc 344
Query: 472 gtgcg 476
|||||
Sbjct: 343 gtgcg 339
>gb|DR050153.1|DR050153 RTBOR1_21_D02.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_21_D02_A029 5', mRNA sequence
Length = 873
Score = 65.9 bits (33), Expect = 4e-009
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||| ||| | |||||| ||||| |||||||||||||| ||||||||
Sbjct: 409 gtgaacaggccctccctgttcatcaggtctacgtaatacttgttgtcgaacacgttgggc 468
Query: 472 gtgcg 476
|||||
Sbjct: 469 gtgcg 473
>gb|CO159243.1|CO159243 FLD1_12_H06.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_12_H06_A029 3', mRNA sequence
Length = 668
Score = 61.9 bits (31), Expect = 6e-008
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 561 gtcctgcgtcgggaacagccggttgtcgaaggagctgcagtgcgcgatgcc 611
||||||||||||| | || || ||| |||||||||||||||||||||||||
Sbjct: 121 gtcctgcgtcgggtatagacgattggcgaaggagctgcagtgcgcgatgcc 71
Score = 44.1 bits (22), Expect = 0.014
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 400 tcctggtccgacgtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcg 459
|||||||| || |||||||| |||| ||||| | ||||| ||||| ||||||||||||
Sbjct: 282 tcctggtcggaggtgaagagtccctgtcggttcacgaggtctacgtaatacttgttgtcg 223
Query: 460 aa 461
||
Sbjct: 222 aa 221
>gb|CO159324.1|CO159324 FLD1_12_H06.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_12_H06_A029 5', mRNA sequence
Length = 794
Score = 61.9 bits (31), Expect = 6e-008
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 561 gtcctgcgtcgggaacagccggttgtcgaaggagctgcagtgcgcgatgcc 611
||||||||||||| | || || ||| |||||||||||||||||||||||||
Sbjct: 582 gtcctgcgtcgggtatagacgattggcgaaggagctgcagtgcgcgatgcc 532
Score = 44.1 bits (22), Expect = 0.014
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 400 tcctggtccgacgtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcg 459
|||||||| || |||||||| |||| ||||| | ||||| ||||| ||||||||||||
Sbjct: 743 tcctggtcggaggtgaagagtccctgtcggttcacgaggtctacgtaatacttgttgtcg 684
Query: 460 aa 461
||
Sbjct: 683 aa 682
>gb|CO164700.1|CO164700 FLD1_49_E11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_49_E11_A029 5', mRNA sequence
Length = 880
Score = 61.9 bits (31), Expect = 6e-008
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 561 gtcctgcgtcgggaacagccggttgtcgaaggagctgcagtgcgcgatgcc 611
||||||||||||| | || || ||| |||||||||||||||||||||||||
Sbjct: 656 gtcctgcgtcgggtatagacgattggcgaaggagctgcagtgcgcgatgcc 606
Score = 44.1 bits (22), Expect = 0.014
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 400 tcctggtccgacgtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcg 459
|||||||| || |||||||| |||| ||||| | ||||| ||||| ||||||||||||
Sbjct: 817 tcctggtcggaggtgaagagtccctggcggttcacgaggtctacgtaatacttgttgtcg 758
Query: 460 aa 461
||
Sbjct: 757 aa 756
>gb|CO201148.1|CO201148 RTCNT2_4_A02.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_4_A02_A029 3', mRNA sequence
Length = 719
Score = 61.9 bits (31), Expect = 6e-008
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 561 gtcctgcgtcgggaacagccggttgtcgaaggagctgcagtgcgcgatgcc 611
||||||||||||| | || || ||| |||||||||||||||||||||||||
Sbjct: 168 gtcctgcgtcgggtatagacgattggcgaaggagctgcagtgcgcgatgcc 118
Score = 44.1 bits (22), Expect = 0.014
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 400 tcctggtccgacgtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcg 459
|||||||| || |||||||| |||| ||||| | ||||| ||||| ||||||||||||
Sbjct: 329 tcctggtcggaggtgaagagtccctggcggttcacgaggtctacgtaatacttgttgtcg 270
Query: 460 aa 461
||
Sbjct: 269 aa 268
>gb|CO201226.1|CO201226 RTCNT2_4_A02.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_4_A02_A029 5', mRNA sequence
Length = 666
Score = 61.9 bits (31), Expect = 6e-008
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 561 gtcctgcgtcgggaacagccggttgtcgaaggagctgcagtgcgcgatgcc 611
||||||||||||| | || || ||| |||||||||||||||||||||||||
Sbjct: 541 gtcctgcgtcgggtatagacgattggcgaaggagctgcagtgcgcgatgcc 491
>gb|DR099384.1|DR099384 STRR1_55_E12.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_55_E12_A033 3', mRNA sequence
Length = 885
Score = 61.9 bits (31), Expect = 6e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 561 gtcctgcgtcgggaacagccggttgtcgaaggagctgcagtgcgcgatgcc 611
||||||||||||| | || || ||| |||||||||||||||||||||||||
Sbjct: 602 gtcctgcgtcgggtatagacgattggcgaaggagctgcagtgcgcgatgcc 652
Score = 44.1 bits (22), Expect = 0.014
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 400 tcctggtccgacgtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcg 459
|||||||| || |||||||| |||| ||||| | ||||| ||||| ||||||||||||
Sbjct: 441 tcctggtcggaggtgaagagtccctggcggttcacgaggtctacgtaatacttgttgtcg 500
Query: 460 aa 461
||
Sbjct: 501 aa 502
>gb|DR099394.1|DR099394 STRR1_55_F12.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_55_F12_A033 3', mRNA sequence
Length = 871
Score = 61.9 bits (31), Expect = 6e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 561 gtcctgcgtcgggaacagccggttgtcgaaggagctgcagtgcgcgatgcc 611
||||||||||||| | || || ||| |||||||||||||||||||||||||
Sbjct: 588 gtcctgcgtcgggtatagacgattggcgaaggagctgcagtgcgcgatgcc 638
Score = 44.1 bits (22), Expect = 0.014
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 400 tcctggtccgacgtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcg 459
|||||||| || |||||||| |||| ||||| | ||||| ||||| ||||||||||||
Sbjct: 427 tcctggtcggaggtgaagagtccctggcggttcacgaggtctacgtaatacttgttgtcg 486
Query: 460 aa 461
||
Sbjct: 487 aa 488
>gb|DR163463.1|DR163463 RTFE1_43_C04.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_43_C04_A029 3', mRNA sequence
Length = 859
Score = 61.9 bits (31), Expect = 6e-008
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 561 gtcctgcgtcgggaacagccggttgtcgaaggagctgcagtgcgcgatgcc 611
||||||||||||| | || || ||| |||||||||||||||||||||||||
Sbjct: 323 gtcctgcgtcgggtatagacgattggcgaaggagctgcagtgcgcgatgcc 273
Score = 44.1 bits (22), Expect = 0.014
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 400 tcctggtccgacgtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcg 459
|||||||| || |||||||| |||| ||||| | ||||| ||||| ||||||||||||
Sbjct: 484 tcctggtcggaggtgaagagtccctggcggttcacgaggtctacgtaatacttgttgtcg 425
Query: 460 aa 461
||
Sbjct: 424 aa 423
>gb|DR682260.1|DR682260 EST1072335 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA865 3' end, mRNA sequence
Length = 782
Score = 61.9 bits (31), Expect = 6e-008
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 561 gtcctgcgtcgggaacagccggttgtcgaaggagctgcagtgcgcgatgcc 611
||||||||||||| | || || ||| |||||||||||||||||||||||||
Sbjct: 704 gtcctgcgtcgggtatagacgattggcgaaggagctgcagtgcgcgatgcc 654
Score = 40.1 bits (20), Expect = 0.22
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 980 cgtcgcagccctgcacgaagcagtcgtggaagtgga 1015
||||||| ||||| ||||||||||| ||||| ||||
Sbjct: 285 cgtcgcaaccctgaacgaagcagtcatggaaatgga 250
>gb|DR688664.1|DR688664 EST1078749 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC906 3' end, mRNA sequence
Length = 835
Score = 61.9 bits (31), Expect = 6e-008
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 561 gtcctgcgtcgggaacagccggttgtcgaaggagctgcagtgcgcgatgcc 611
||||||||||||| | || || ||| |||||||||||||||||||||||||
Sbjct: 704 gtcctgcgtcgggtatagacgattggcgaaggagctgcagtgcgcgatgcc 654
Score = 40.1 bits (20), Expect = 0.22
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 980 cgtcgcagccctgcacgaagcagtcgtggaagtgga 1015
||||||| ||||| ||||||||||| ||||| ||||
Sbjct: 285 cgtcgcaaccctgaacgaagcagtcatggaaatgga 250
>gb|DT634886.1|DT634886 EST1149817 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGA84 3' end, mRNA sequence
Length = 838
Score = 61.9 bits (31), Expect = 6e-008
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 561 gtcctgcgtcgggaacagccggttgtcgaaggagctgcagtgcgcgatgcc 611
||||||||||||| | || || ||| |||||||||||||||||||||||||
Sbjct: 712 gtcctgcgtcgggtatagacgattggcgaaggagctgcagtgcgcgatgcc 662
Score = 40.1 bits (20), Expect = 0.22
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 980 cgtcgcagccctgcacgaagcagtcgtggaagtgga 1015
||||||| ||||| ||||||||||| ||||| ||||
Sbjct: 293 cgtcgcaaccctgaacgaagcagtcatggaaatgga 258
>gb|BF778968.1|BF778968 NXSI_091_E05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_091_E05 5' similar to Arabidopsis thaliana
sequence At1g71695 peroxidase ATP4a see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 229
Score = 58.0 bits (29), Expect = 9e-007
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 442 acgtagtacttgttgtcgaaggcgttgggcgtgcgga 478
||||| ||||||||||||||| |||||||||||||||
Sbjct: 193 acgtaatacttgttgtcgaagacgttgggcgtgcgga 157
>gb|DR096015.1|DR096015 STRR1_25_E03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_25_E03_A033 3', mRNA sequence
Length = 751
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||| ||| | || ||| ||||| |||||||||||||| ||||||||
Sbjct: 327 gtgaacaggccctccctgttcatcaagtctacgtaatacttgttgtcgaacacgttgggc 268
Query: 472 gtgcg 476
|||||
Sbjct: 267 gtgcg 263
>gb|DR096092.1|DR096092 STRR1_25_E03.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_25_E03_A033 5', mRNA sequence
Length = 786
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgtcgaaggcgttgggc 471
||||| |||||||||| ||| | || ||| ||||| |||||||||||||| ||||||||
Sbjct: 709 gtgaacaggccctccctgttcatcaagtctacgtaatacttgttgtcgaacacgttgggc 650
Query: 472 gtgcg 476
|||||
Sbjct: 649 gtgcg 645
Score = 42.1 bits (21), Expect = 0.056
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 988 ccctgcacgaagcagtcgtggaagtggag 1016
||||| ||||||||||||||||| |||||
Sbjct: 133 ccctgaacgaagcagtcgtggaaatggag 105
>gb|DT630985.1|DT630985 EST1145916 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF346 3' end, mRNA sequence
Length = 800
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 564 ctgcgtcgggaacagccggttgtcgaaggagctgcagtgcgcgatgcc 611
|||||||||| | || || ||| |||||||||||||||||||||||||
Sbjct: 709 ctgcgtcgggtatagacgattggcgaaggagctgcagtgcgcgatgcc 662
Score = 40.1 bits (20), Expect = 0.22
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 980 cgtcgcagccctgcacgaagcagtcgtggaagtgga 1015
||||||| ||||| ||||||||||| ||||| ||||
Sbjct: 293 cgtcgcaaccctgaacgaagcagtcatggaaatgga 258
>gb|CF386544.1|CF386544 RTDR1_15_C07.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_15_C07_A015 3', mRNA
sequence
Length = 466
Score = 52.0 bits (26), Expect = 6e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 412 gtgaagaggccctcccggttgagcaggtccacgtagtacttgttgt 457
||||| |||||||||||||| | |||||| ||||| ||||||||||
Sbjct: 46 gtgaacaggccctcccggttcatcaggtctacgtaatacttgttgt 1
>gb|CF665191.1|CF665191 RTCNT1_14_A12.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_14_A12_A029 5', mRNA sequence
Length = 678
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 982 tcgcagccctgcacgaagcagtcgtggaagtggagcc 1018
||||| ||||| || ||||||||||||||||||||||
Sbjct: 289 tcgcatccctggacaaagcagtcgtggaagtggagcc 253
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 100,563
Number of Sequences: 355925
Number of extensions: 100563
Number of successful extensions: 24047
Number of sequences better than 0.5: 166
Number of HSP's better than 0.5 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23675
Number of HSP's gapped (non-prelim): 367
length of query: 1289
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1270
effective length of database: 210,514,662
effective search space: 267353620740
effective search space used: 267353620740
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)