BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665460.2.1
(649 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|BD267384.1| Compositions isolated from plant cells and ... 44 0.007
emb|CR377484.1| Pinus pinaster SSR, clone PPA6C02 40 0.11
emb|CR377485.1| Pinus pinaster SSR, clone PPA6C02r 40 0.11
emb|CR377486.1| Pinus pinaster SSR, clone PPA6C03 40 0.11
emb|CR377978.1| Pinus pinaster SSR, clone PPB3D08 40 0.11
emb|CR378005.1| Pinus pinaster SSR, clone PPB1C02 40 0.11
emb|CR378122.1| Pinus pinaster SSR, clone PPB2H01 40 0.11
gb|AW043342.1|AW043342 ST32C02 Pine TriplEx shoot tip libra... 38 0.43
gb|CV032912.1|CV032912 RTNACL1_19_C07.b1_A029 Roots plus ad... 38 0.43
gb|CV134901.1|CV134901 EST846110 Sequencing ESTs from loblo... 38 0.43
gb|DR070539.1|DR070539 RTDK1_14_A09.b1_A029 Roots, dark Pin... 38 0.43
gb|DR079653.1|DR079653 RTFEPL1_12_E02.g1_A029 Roots plus ad... 38 0.43
gb|DR088506.1|DR088506 RTAL1_2_F07.b1_A029 Roots plus added... 38 0.43
gb|DT626168.1|DT626168 EST1158092 Sequencing ESTs from lobl... 38 0.43
emb|CR354525.1| Pinus pinaster SSR, clone PPA5F07 38 0.43
emb|CR377590.1| Pinus pinaster SSR, clone PPA1B09r 38 0.43
>dbj|BD267384.1| Compositions isolated from plant cells and utilization of the same
in modifying plant cell signal transduction
Length = 1024
Score = 44.1 bits (22), Expect = 0.007
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 405 cgtcttcgccacctccacctccacct 430
||||||| ||||||||||||||||||
Sbjct: 767 cgtcttccccacctccacctccacct 792
>emb|CR377484.1| Pinus pinaster SSR, clone PPA6C02
Length = 528
Score = 40.1 bits (20), Expect = 0.11
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 413 ccacctccacctccacctatgcatgctcctcc 444
|||||||||||||||||| ||| | |||||||
Sbjct: 312 ccacctccacctccacctttgcctcctcctcc 343
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 412 gccacctccacctccacct 430
|||||||||||||||||||
Sbjct: 74 gccacctccacctccacct 92
>emb|CR377485.1| Pinus pinaster SSR, clone PPA6C02r
Length = 300
Score = 40.1 bits (20), Expect = 0.11
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 413 ccacctccacctccacctatgcatgctcctcc 444
|||||||||||||||||| ||| | |||||||
Sbjct: 178 ccacctccacctccacctttgcctcctcctcc 147
>emb|CR377486.1| Pinus pinaster SSR, clone PPA6C03
Length = 280
Score = 40.1 bits (20), Expect = 0.11
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 413 ccacctccacctccacctatgcatgctcctcc 444
|||||||||||||||||| ||| | |||||||
Sbjct: 179 ccacctccacctccacctttgcctcctcctcc 148
>emb|CR377978.1| Pinus pinaster SSR, clone PPB3D08
Length = 622
Score = 40.1 bits (20), Expect = 0.11
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 413 ccacctccacctccacctatgcatgctcctcc 444
|||||||||||||||||| ||| | |||||||
Sbjct: 270 ccacctccacctccacctttgcctcctcctcc 301
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 412 gccacctccacctccacct 430
|||||||||||||||||||
Sbjct: 31 gccacctccacctccacct 49
>emb|CR378005.1| Pinus pinaster SSR, clone PPB1C02
Length = 366
Score = 40.1 bits (20), Expect = 0.11
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 413 ccacctccacctccacctatgcatgctcctcc 444
|||||||||||||||||| ||| | |||||||
Sbjct: 360 ccacctccacctccacctttgcctcctcctcc 329
>emb|CR378122.1| Pinus pinaster SSR, clone PPB2H01
Length = 404
Score = 40.1 bits (20), Expect = 0.11
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 413 ccacctccacctccacctatgcatgctcctcc 444
|||||||||||||||||| ||| | |||||||
Sbjct: 392 ccacctccacctccacctttgcctcctcctcc 361
>gb|AW043342.1|AW043342 ST32C02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST32C02, mRNA sequence
Length = 597
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 412 gccacctccacctccacct 430
|||||||||||||||||||
Sbjct: 287 gccacctccacctccacct 269
>gb|CV032912.1|CV032912 RTNACL1_19_C07.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_19_C07_A029 3', mRNA sequence
Length = 614
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 413 ccacctccacctccaccta 431
|||||||||||||||||||
Sbjct: 82 ccacctccacctccaccta 100
>gb|CV134901.1|CV134901 EST846110 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICCG85 5' end, mRNA sequence
Length = 606
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 412 gccacctccacctccacct 430
|||||||||||||||||||
Sbjct: 407 gccacctccacctccacct 389
>gb|DR070539.1|DR070539 RTDK1_14_A09.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_14_A09_A029 3', mRNA sequence
Length = 807
Score = 38.2 bits (19), Expect = 0.43
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 527 aaatgcatacacatggtatatac 549
|||||||||| ||||||||||||
Sbjct: 536 aaatgcatactcatggtatatac 514
>gb|DR079653.1|DR079653 RTFEPL1_12_E02.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_12_E02_A029 5', mRNA sequence
Length = 748
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 412 gccacctccacctccacct 430
|||||||||||||||||||
Sbjct: 533 gccacctccacctccacct 515
>gb|DR088506.1|DR088506 RTAL1_2_F07.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_2_F07_A029 3', mRNA sequence
Length = 654
Score = 38.2 bits (19), Expect = 0.43
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 527 aaatgcatacacatggtatatac 549
|||||||||| ||||||||||||
Sbjct: 384 aaatgcatactcatggtatatac 362
>gb|DT626168.1|DT626168 EST1158092 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA782 5' end, mRNA sequence
Length = 409
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 412 gccacctccacctccacct 430
|||||||||||||||||||
Sbjct: 407 gccacctccacctccacct 389
>emb|CR354525.1| Pinus pinaster SSR, clone PPA5F07
Length = 496
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 412 gccacctccacctccacct 430
|||||||||||||||||||
Sbjct: 63 gccacctccacctccacct 81
>emb|CR377590.1| Pinus pinaster SSR, clone PPA1B09r
Length = 506
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 412 gccacctccacctccacct 430
|||||||||||||||||||
Sbjct: 57 gccacctccacctccacct 75
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 54,905
Number of Sequences: 355925
Number of extensions: 54905
Number of successful extensions: 15881
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15798
Number of HSP's gapped (non-prelim): 64
length of query: 649
length of database: 217,277,237
effective HSP length: 19
effective length of query: 630
effective length of database: 210,514,662
effective search space: 132624237060
effective search space used: 132624237060
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)