BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3642920.2.1
(570 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR744317.1|DR744317 RTCU1_21_E03.g1_A029 Roots plus adde... 88 5e-016
gb|BX254765.1|BX254765 BX254765 Pinus pinaster differenciat... 42 0.024
gb|CX651405.1|CX651405 COLD1_52_D12.b1_A029 Root cold Pinus... 40 0.096
gb|CX651478.1|CX651478 COLD1_52_D12.g1_A029 Root cold Pinus... 40 0.096
gb|BE458150.1|BE458150 NXCI_008_C03_F NXCI (Nsf Xylem Compr... 38 0.38
gb|BQ197959.1|BQ197959 NXLV123_C04_F NXLV (Nsf Xylem Late w... 38 0.38
gb|DR053011.1|DR053011 RTCA1_8_A01.g1_A029 Roots minus calc... 38 0.38
gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfu... 38 0.38
gb|DR161477.1|DR161477 RTFE1_12_B06.b1_A029 Roots minus iro... 38 0.38
gb|DR686821.1|DR686821 EST1076899 Normalized pine embryo li... 38 0.38
gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo li... 38 0.38
gb|DT633602.1|DT633602 EST1148533 Normalized pine embryo li... 38 0.38
gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo li... 38 0.38
gb|AF441503.1| Pinus taeda clone 29j13f microsatellite PtTX... 38 0.38
>gb|DR744317.1|DR744317 RTCU1_21_E03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_21_E03_A029 5', mRNA sequence
Length = 749
Score = 87.7 bits (44), Expect = 5e-016
Identities = 110/132 (83%)
Strand = Plus / Plus
Query: 99 catgttattactgataaaaagacctatcctgccatgcattcatggtttgctttaaattct 158
||||| ||||| ||||| ||||| ||| | ||||||||| ||||||||||||| || ||
Sbjct: 195 catgtcattacagataagaagacatatgcagccatgcatgcatggtttgctttgcatcct 254
Query: 159 ctcagtcctgctattgttgaggtgaaaggtgttcatcaatttgattggttaacacaagaa 218
|| |||||| || ||||||||||| |||||||||| ||||| ||| |||| |||||
Sbjct: 255 ctagctcctgccatcattgaggtgaaaagtgttcatcattttgaatggctaaccaaagaa 314
Query: 219 aatgttcctgta 230
||||||||||||
Sbjct: 315 aatgttcctgta 326
>gb|BX254765.1|BX254765 BX254765 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP104A12, mRNA sequence
Length = 629
Score = 42.1 bits (21), Expect = 0.024
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 99 catgttattactgataaaaagacctatcctgccatgcattcatggtttgcttt 151
||||| ||||| ||||||||||| ||| | | |||||| |||||||||||||
Sbjct: 521 catgtcattacagataaaaagacgtatgcaccaatgcatgcatggtttgcttt 573
>gb|CX651405.1|CX651405 COLD1_52_D12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_52_D12_A029 3', mRNA sequence
Length = 659
Score = 40.1 bits (20), Expect = 0.096
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 531 tgggtgatgtctaagaggttcaggaattattt 562
||||||||||| |||||||||| ||| |||||
Sbjct: 57 tgggtgatgtccaagaggttcaagaactattt 88
>gb|CX651478.1|CX651478 COLD1_52_D12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_52_D12_A029 5', mRNA sequence
Length = 271
Score = 40.1 bits (20), Expect = 0.096
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 531 tgggtgatgtctaagaggttcaggaattattt 562
||||||||||| |||||||||| ||| |||||
Sbjct: 43 tgggtgatgtccaagaggttcaagaactattt 74
>gb|BE458150.1|BE458150 NXCI_008_C03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_008_C03 5' similar to Arabidopsis
thaliana sequence At3g01040 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 453
Score = 38.2 bits (19), Expect = 0.38
Identities = 33/38 (86%)
Strand = Plus / Plus
Query: 114 aaaaagacctatcctgccatgcattcatggtttgcttt 151
|||||||| ||| | || ||||||||||||| ||||||
Sbjct: 337 aaaaagacatatgcagcaatgcattcatggtntgcttt 374
>gb|BQ197959.1|BQ197959 NXLV123_C04_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV123_C04 5' similar to Arabidopsis thaliana
sequence At3g25140 glycosyl transferase, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 442
Score = 38.2 bits (19), Expect = 0.38
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 423 tttcttgatgatgatgttgttgt 445
||||| |||||||||||||||||
Sbjct: 313 tttctagatgatgatgttgttgt 335
>gb|DR053011.1|DR053011 RTCA1_8_A01.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_8_A01_A029 5', mRNA sequence
Length = 802
Score = 38.2 bits (19), Expect = 0.38
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 423 tttcttgatgatgatgttgttgt 445
||||| |||||||||||||||||
Sbjct: 477 tttctagatgatgatgttgttgt 499
>gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_E05_A029 3', mRNA sequence
Length = 820
Score = 38.2 bits (19), Expect = 0.38
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 423 tttcttgatgatgatgttgttgt 445
||||| |||||||||||||||||
Sbjct: 105 tttctagatgatgatgttgttgt 127
>gb|DR161477.1|DR161477 RTFE1_12_B06.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_12_B06_A029 3', mRNA sequence
Length = 482
Score = 38.2 bits (19), Expect = 0.38
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 423 tttcttgatgatgatgttgttgt 445
||||| |||||||||||||||||
Sbjct: 319 tttctagatgatgatgttgttgt 297
>gb|DR686821.1|DR686821 EST1076899 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABK22 3' end, mRNA sequence
Length = 742
Score = 38.2 bits (19), Expect = 0.38
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 423 tttcttgatgatgatgttgttgt 445
||||| |||||||||||||||||
Sbjct: 597 tttctagatgatgatgttgttgt 619
>gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACF91 3' end, mRNA sequence
Length = 854
Score = 38.2 bits (19), Expect = 0.38
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 423 tttcttgatgatgatgttgttgt 445
||||| |||||||||||||||||
Sbjct: 89 tttctagatgatgatgttgttgt 111
>gb|DT633602.1|DT633602 EST1148533 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFW66 3' end, mRNA sequence
Length = 879
Score = 38.2 bits (19), Expect = 0.38
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 423 tttcttgatgatgatgttgttgt 445
||||| |||||||||||||||||
Sbjct: 605 tttctagatgatgatgttgttgt 627
>gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGF84 3' end, mRNA sequence
Length = 768
Score = 38.2 bits (19), Expect = 0.38
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 423 tttcttgatgatgatgttgttgt 445
||||| |||||||||||||||||
Sbjct: 97 tttctagatgatgatgttgttgt 119
>gb|AF441503.1| Pinus taeda clone 29j13f microsatellite PtTX3008 sequence
Length = 585
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 427 ttgatgatgatgttgttgt 445
|||||||||||||||||||
Sbjct: 186 ttgatgatgatgttgttgt 168
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 77,855
Number of Sequences: 355925
Number of extensions: 77855
Number of successful extensions: 21104
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21087
Number of HSP's gapped (non-prelim): 16
length of query: 570
length of database: 217,277,237
effective HSP length: 19
effective length of query: 551
effective length of database: 210,514,662
effective search space: 115993578762
effective search space used: 115993578762
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)