BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3561840.2.1
(1168 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL749789.1|AL749789 AL749789 AS Pinus pinaster cDNA clon... 58 9e-007
gb|U90344.1|PRU90344 Pinus radiata putative MADS box transc... 54 1e-005
gb|AW754659.1|AW754659 PC04G10 Pine TriplEx pollen cone lib... 52 5e-005
gb|AF006210.1|AF006210 Pinus resinosa MADS box transcriptio... 52 5e-005
gb|AF023615.1|AF023615 Pinus radiata MADS box protein mRNA,... 52 5e-005
gb|AW010398.1|AW010398 ST06D02 Pine TriplEx shoot tip libra... 50 2e-004
gb|BQ290846.1|BQ290846 NXRV050_D03_F NXRV (Nsf Xylem Root w... 50 2e-004
gb|BQ654531.1|BQ654531 NXRV081_H04_F NXRV (Nsf Xylem Root w... 50 2e-004
gb|CX645838.1|CX645838 COLD1_5_D01.g1_A029 Root cold Pinus ... 50 2e-004
gb|DR177222.1|DR177222 RTMNUT1_3_H10.g1_A029 Roots minus mi... 50 2e-004
gb|U90346.1|PRU90346 Pinus radiata putative MADS box transc... 50 2e-004
gb|CF394057.1|CF394057 RTDS2_3_D04.b1_A021 Drought-stressed... 48 8e-004
gb|CF668263.1|CF668263 RTCNT1_35_A03.g1_A029 Root control P... 48 8e-004
gb|CO200411.1|CO200411 GEO2_7_G03.b1_A032 Root gravitropism... 48 8e-004
gb|CO200495.1|CO200495 GEO2_7_G03.g1_A032 Root gravitropism... 48 8e-004
gb|CO201105.1|CO201105 RTCNT2_3_D12.g1_A029 Root control 2 ... 48 8e-004
gb|CO364847.1|CO364847 RTK1_22_D10.b1_A029 Roots minus pota... 48 8e-004
gb|CV031753.1|CV031753 RTNACL1_3_B05.g1_A029 Roots plus add... 48 8e-004
gb|DR058437.1|DR058437 RTNIT1_11_F11.g1_A029 Roots minus ni... 48 8e-004
gb|DR081124.1|DR081124 RTFEPL1_27_C11.g1_A029 Roots plus ad... 48 8e-004
gb|DR178004.1|DR178004 RTMNUT1_8_E05.g1_A029 Roots minus mi... 48 8e-004
gb|U76726.1|PRU76726 Pinus radiata MADS-box protein (PrMADS... 48 8e-004
gb|AW010611.1|AW010611 ST08G08 Pine TriplEx shoot tip libra... 46 0.003
gb|BG318417.1|BG318417 NXPV_013_D07_F NXPV (Nsf Xylem Plani... 46 0.003
gb|BG625803.1|BG625803 NXPV_066_C06_F NXPV (Nsf Xylem Plani... 46 0.003
gb|CF475501.1|CF475501 RTWW2_12_G12.g1_A021 Well-watered lo... 46 0.003
gb|DR384822.1|DR384822 RTHG1_4_G03.g1_A029 Roots plus added... 46 0.003
gb|BM134188.1|BM134188 NXLV_017_H01_F NXLV (Nsf Xylem Late ... 44 0.013
gb|CF386447.1|CF386447 RTDR1_14_B10.g1_A015 Loblolly pine r... 42 0.051
gb|CO361066.1|CO361066 NDL2_2_B04.g1_A029 Needles control 2... 42 0.051
gb|DR167777.1|DR167777 RTPHOS1_21_A12.b1_A029 Roots minus p... 42 0.051
gb|CF388137.1|CF388137 RTDR2_1_D05.b1_A021 Loblolly pine ro... 40 0.20
gb|CF389852.1|CF389852 RTDR2_11_B08.b1_A021 Loblolly pine r... 40 0.20
gb|CF389963.1|CF389963 RTDR2_11_B08.g1_A021 Loblolly pine r... 40 0.20
gb|CO161503.1|CO161503 FLD1_29_F09.b1_A029 Root flooded Pin... 40 0.20
gb|CO161575.1|CO161575 FLD1_29_F09.g1_A029 Root flooded Pin... 40 0.20
gb|CX713803.1|CX713803 RTPQ1_13_F12.b1_A032 Roots treated w... 40 0.20
gb|DR013883.1|DR013883 HEAT1_22_D05.b1_A029 Root at 37 C fo... 40 0.20
>gb|AL749789.1|AL749789 AL749789 AS Pinus pinaster cDNA clone AS01A11 similar to MADS-BOX,
mRNA sequence
Length = 349
Score = 58.0 bits (29), Expect = 9e-007
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 123 agatcaagaggatcgagaacaacacgagccggcaggt 159
|||| |||||||||||||||||||||||| |||||||
Sbjct: 106 agatgaagaggatcgagaacaacacgagcaggcaggt 142
>gb|U90344.1|PRU90344 Pinus radiata putative MADS box transcription factor PrMADS9 mRNA,
complete cds
Length = 1038
Score = 54.0 bits (27), Expect = 1e-005
Identities = 84/103 (81%)
Strand = Plus / Plus
Query: 131 aggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccgcaatgggctcctc 190
|||||||||||| |||||||| ||||||| || || | |||||| | |||||| | ||
Sbjct: 146 aggatcgagaacgacacgagcaggcaggttacgttttctaagcgcaggaatgggttactg 205
Query: 191 aagaaggcgtacgagctctccgtcctctgcgacgccgaggtgg 233
||||| || || |||||||| || |||||||| ||||| ||||
Sbjct: 206 aagaaagcttatgagctctctgtgctctgcgatgccgaagtgg 248
>gb|AW754659.1|AW754659 PC04G10 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC04G10, mRNA sequence
Length = 526
Score = 52.0 bits (26), Expect = 5e-005
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 118 gattgagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccg 177
||||||||| |||||||| || || | |||| ||| |||||||| ||||||||||||||
Sbjct: 342 gattgagataaagaggattgaaaatactacgaaccgacaggtcactttctgcaagcgccg 401
Query: 178 caatgg 183
|||||
Sbjct: 402 aaatgg 407
>gb|AF006210.1|AF006210 Pinus resinosa MADS box transcription factor mRNA, complete cds
Length = 1726
Score = 52.0 bits (26), Expect = 5e-005
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 118 gattgagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccg 177
||||||||| |||||||| || || | |||| ||| |||||||| ||||||||||||||
Sbjct: 489 gattgagataaagaggattgaaaatactacgaaccgacaggtcactttctgcaagcgccg 548
Query: 178 caatgg 183
|||||
Sbjct: 549 aaatgg 554
>gb|AF023615.1|AF023615 Pinus radiata MADS box protein mRNA, complete cds
Length = 922
Score = 52.0 bits (26), Expect = 5e-005
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 118 gattgagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccg 177
||||||||| |||||||| || || | |||| ||| |||||||| ||||||||||||||
Sbjct: 28 gattgagataaagaggattgaaaatactacgaaccgacaggtcactttctgcaagcgccg 87
Query: 178 caatgg 183
|||||
Sbjct: 88 aaatgg 93
>gb|AW010398.1|AW010398 ST06D02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST06D02, mRNA sequence
Length = 647
Score = 50.1 bits (25), Expect = 2e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 169 caagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccga 228
||||||||| || || || || ||||||||||||||||| || || || ||||| |||||
Sbjct: 89 caagcgccggaacggactgctgaagaaggcgtacgagctatcagtgctgtgcgatgccga 148
Query: 229 ggtggcgct 237
||||||||
Sbjct: 149 agtggcgct 157
>gb|BQ290846.1|BQ290846 NXRV050_D03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV050_D03 5' similar to Arabidopsis thaliana
sequence At5g15800 transcription factor (AGL2) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 546
Score = 50.1 bits (25), Expect = 2e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 169 caagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccga 228
||||||||| || || || || ||||||||||||||||| || || || ||||| |||||
Sbjct: 150 caagcgccggaacggactgctgaagaaggcgtacgagctatcagtgctgtgcgatgccga 209
Query: 229 ggtggcgct 237
||||||||
Sbjct: 210 agtggcgct 218
>gb|BQ654531.1|BQ654531 NXRV081_H04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV081_H04 5' similar to Arabidopsis thaliana
sequence At5g15800 transcription factor (AGL2) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 436
Score = 50.1 bits (25), Expect = 2e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 169 caagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccga 228
||||||||| || || || || ||||||||||||||||| || || || ||||| |||||
Sbjct: 127 caagcgccggaacggactgctgaagaaggcgtacgagctatcagtgctgtgcgatgccga 186
Query: 229 ggtggcgct 237
||||||||
Sbjct: 187 agtggcgct 195
>gb|CX645838.1|CX645838 COLD1_5_D01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_5_D01_A029 5', mRNA sequence
Length = 705
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 170 aagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
||||||||||| ||||| || ||||| || ||||||||||| || ||||||||
Sbjct: 233 aagcgccgcaacgggctgctgaagaaagcttacgagctctcggtgctctgcga 285
>gb|DR177222.1|DR177222 RTMNUT1_3_H10.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_3_H10_A029 5', mRNA sequence
Length = 770
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 170 aagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
||||||||||| ||||| || ||||| || ||||||||||| || ||||||||
Sbjct: 246 aagcgccgcaacgggctgctgaagaaagcttacgagctctcggtgctctgcga 298
>gb|U90346.1|PRU90346 Pinus radiata putative MADS box transcription factor PrMADS5 mRNA,
complete cds
Length = 1301
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 170 aagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
||||||||||| ||||| || ||||| || ||||||||||| || ||||||||
Sbjct: 235 aagcgccgcaacgggctgctgaagaaagcttacgagctctcggtgctctgcga 287
>gb|CF394057.1|CF394057 RTDS2_3_D04.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_3_D04_A021 3', mRNA sequence
Length = 611
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 122 gagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccg 177
|||||||||| ||||||||||| | | | ||||||| |||||||||||||||||
Sbjct: 459 gagatcaagaagatcgagaacagcgtgcacaggcaggtgaccttctgcaagcgccg 404
>gb|CF668263.1|CF668263 RTCNT1_35_A03.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_35_A03_A029 5', mRNA sequence
Length = 764
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 122 gagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccg 177
|||||||||| ||||||||||| | | | ||||||| |||||||||||||||||
Sbjct: 404 gagatcaagaagatcgagaacagcgtgcacaggcaggtgaccttctgcaagcgccg 459
>gb|CO200411.1|CO200411 GEO2_7_G03.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_7_G03_A032 3', mRNA sequence
Length = 860
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 122 gagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccg 177
|||||||||| ||||||||||| | | | ||||||| |||||||||||||||||
Sbjct: 182 gagatcaagaagatcgagaacagcgtgcacaggcaggtgaccttctgcaagcgccg 237
>gb|CO200495.1|CO200495 GEO2_7_G03.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_7_G03_A032 5', mRNA sequence
Length = 820
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 122 gagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccg 177
|||||||||| ||||||||||| | | | ||||||| |||||||||||||||||
Sbjct: 425 gagatcaagaagatcgagaacagcgtgcacaggcaggtgaccttctgcaagcgccg 480
>gb|CO201105.1|CO201105 RTCNT2_3_D12.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_3_D12_A029 5', mRNA sequence
Length = 758
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 122 gagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccg 177
|||||||||| ||||||||||| | | | ||||||| |||||||||||||||||
Sbjct: 211 gagatcaagaagatcgagaacagcgtgcacaggcaggtgaccttctgcaagcgccg 266
>gb|CO364847.1|CO364847 RTK1_22_D10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_D10_A029 3', mRNA sequence
Length = 867
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 122 gagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccg 177
|||||||||| ||||||||||| | | | ||||||| |||||||||||||||||
Sbjct: 629 gagatcaagaagatcgagaacagcgtgcacaggcaggtgaccttctgcaagcgccg 574
>gb|CV031753.1|CV031753 RTNACL1_3_B05.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_3_B05_A029 5', mRNA sequence
Length = 851
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 122 gagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccg 177
|||||||||| ||||||||||| | | | ||||||| |||||||||||||||||
Sbjct: 197 gagatcaagaagatcgagaacagcgtgcacaggcaggtgaccttctgcaagcgccg 252
>gb|DR058437.1|DR058437 RTNIT1_11_F11.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_11_F11_A029 5', mRNA sequence
Length = 795
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 122 gagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccg 177
|||||||||| ||||||||||| | | | ||||||| |||||||||||||||||
Sbjct: 219 gagatcaagaagatcgagaacagcgtgcacaggcaggtgaccttctgcaagcgccg 274
>gb|DR081124.1|DR081124 RTFEPL1_27_C11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_27_C11_A029 5', mRNA sequence
Length = 407
Score = 48.1 bits (24), Expect = 8e-004
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 131 aggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccgcaatgggctcctc 190
|||||||||||| |||||||| ||||||| || || | |||||| | |||||| | ||
Sbjct: 104 aggatcgagaacgacacgagcaggcaggttacgttttctaagcgcaggaatgggttactg 163
Query: 191 aagaaggcgtacgagctctccgtcctctgcga 222
||||| || || |||||||| || ||||||||
Sbjct: 164 aagaaagcttatgagctctctgtgctctgcga 195
>gb|DR178004.1|DR178004 RTMNUT1_8_E05.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_8_E05_A029 5', mRNA sequence
Length = 779
Score = 48.1 bits (24), Expect = 8e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 122 gagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccg 177
|||||||||| ||||||||||| | | | ||||||| |||||||||||||||||
Sbjct: 283 gagatcaagaagatcgagaacagcgtgcacaggcaggtgaccttctgcaagcgccg 338
>gb|U76726.1|PRU76726 Pinus radiata MADS-box protein (PrMADS3) mRNA, complete cds
Length = 1130
Score = 48.1 bits (24), Expect = 8e-004
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 170 aagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccgag 229
|||||||| || || || || ||||||||||||||||| || || || ||||| |||||
Sbjct: 67 aagcgccggaacggactgctgaagaaggcgtacgagctatcagtgctgtgcgatgccgaa 126
Query: 230 gtggcgct 237
||||||||
Sbjct: 127 gtggcgct 134
>gb|AW010611.1|AW010611 ST08G08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST08G08, mRNA sequence
Length = 927
Score = 46.1 bits (23), Expect = 0.003
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 172 gcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
||||||||| ||||| || ||||| || ||||||||||| || ||||||||
Sbjct: 169 gcgccgcaacgggctgctgaagaaagcttacgagctctcggtgctctgcga 219
>gb|BG318417.1|BG318417 NXPV_013_D07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_013_D07 5' similar to Arabidopsis
thaliana sequence At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 577
Score = 46.1 bits (23), Expect = 0.003
Identities = 83/103 (80%)
Strand = Plus / Plus
Query: 131 aggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccgcaatgggctcctc 190
|||||||||||| | |||||| ||||||| || || | |||||| | |||||| | ||
Sbjct: 146 aggatcgagaacgatacgagcaggcaggttacgttttctaagcgcaggaatgggttactg 205
Query: 191 aagaaggcgtacgagctctccgtcctctgcgacgccgaggtgg 233
||||| || || |||||||| || |||||||| ||||| ||||
Sbjct: 206 aagaaagcttatgagctctctgtgctctgcgatgccgaagtgg 248
>gb|BG625803.1|BG625803 NXPV_066_C06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_066_C06 5' similar to Arabidopsis
thaliana sequence At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 428
Score = 46.1 bits (23), Expect = 0.003
Identities = 83/103 (80%)
Strand = Plus / Plus
Query: 131 aggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccgcaatgggctcctc 190
|||||||||||| | |||||| ||||||| || || | |||||| | |||||| | ||
Sbjct: 146 aggatcgagaacgatacgagcaggcaggttacgttttctaagcgcaggaatgggttactg 205
Query: 191 aagaaggcgtacgagctctccgtcctctgcgacgccgaggtgg 233
||||| || || |||||||| || |||||||| ||||| ||||
Sbjct: 206 aagaaagcttatgagctctctgtgctctgcgatgccgaagtgg 248
>gb|CF475501.1|CF475501 RTWW2_12_G12.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_12_G12_A021 5', mRNA sequence
Length = 779
Score = 46.1 bits (23), Expect = 0.003
Identities = 83/103 (80%)
Strand = Plus / Plus
Query: 131 aggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccgcaatgggctcctc 190
|||||||||||| | |||||| ||||||| || || | |||||| | |||||| | ||
Sbjct: 95 aggatcgagaacgatacgagcaggcaggttacgttttctaagcgcaggaatgggttactg 154
Query: 191 aagaaggcgtacgagctctccgtcctctgcgacgccgaggtgg 233
||||| || || |||||||| || |||||||| ||||| ||||
Sbjct: 155 aagaaagcttatgagctctctgtgctctgcgatgccgaagtgg 197
>gb|DR384822.1|DR384822 RTHG1_4_G03.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_4_G03_A029 5', mRNA sequence
Length = 668
Score = 46.1 bits (23), Expect = 0.003
Identities = 83/103 (80%)
Strand = Plus / Plus
Query: 131 aggatcgagaacaacacgagccggcaggtcaccttctgcaagcgccgcaatgggctcctc 190
|||||||||||| | |||||| ||||||| || || | |||||| | |||||| | ||
Sbjct: 146 aggatcgagaacgatacgagcaggcaggttacgttttctaagcgcaggaatgggttactg 205
Query: 191 aagaaggcgtacgagctctccgtcctctgcgacgccgaggtgg 233
||||| || || |||||||| || |||||||| ||||| ||||
Sbjct: 206 aagaaagcttatgagctctctgtgctctgcgatgccgaagtgg 248
>gb|BM134188.1|BM134188 NXLV_017_H01_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_017_H01 5' similar to Arabidopsis thaliana
sequence At2g45660 MADS-box protein (AGL20) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 508
Score = 44.1 bits (22), Expect = 0.013
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 170 aagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
||||||||||| ||||| || ||||| || |||| |||||| || ||||||||
Sbjct: 341 aagcgccgcaacgggctgctgaagaaagcttacgngctctcggtgctctgcga 393
>gb|CF386447.1|CF386447 RTDR1_14_B10.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_14_B10_A015 5', mRNA
sequence
Length = 821
Score = 42.1 bits (21), Expect = 0.051
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 170 aagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
||||||||||| ||||| || ||||| || || |||||||| || ||||||||
Sbjct: 298 aagcgccgcaacgggctgctgaagaaagcttaggagctctcggtgctctgcga 350
>gb|CO361066.1|CO361066 NDL2_2_B04.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_2_B04_A029 5', mRNA sequence
Length = 840
Score = 42.1 bits (21), Expect = 0.051
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 170 aagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
||||||||||| ||||| || ||||| || || |||||||| || ||||||||
Sbjct: 214 aagcgccgcaacgggctgctgaagaaagcttaggagctctcggtgctctgcga 266
>gb|DR167777.1|DR167777 RTPHOS1_21_A12.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_21_A12_A029 3', mRNA sequence
Length = 628
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 113 ggaaggattgagatcaagaggatcgagaa 141
|||| ||||||||||||| ||||||||||
Sbjct: 312 ggaaagattgagatcaagcggatcgagaa 284
>gb|CF388137.1|CF388137 RTDR2_1_D05.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_1_D05_A021 3', mRNA
sequence
Length = 532
Score = 40.1 bits (20), Expect = 0.20
Identities = 137/176 (77%)
Strand = Plus / Minus
Query: 113 ggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaag 172
|||| ||||||||| ||| |||||||||| | || | ||||| || || |||| ||||
Sbjct: 424 ggaaagattgagataaagcggatcgagaatactacaaatcggcaagtgactttctccaag 365
Query: 173 cgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccgaggtg 232
|| || |||||| | || ||||||||||| || || || || || ||||| || ||||||
Sbjct: 364 cgtcgaaatgggttgctaaagaaggcgtatgaactgtctgttctttgcgatgcggaggtg 305
Query: 233 gcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaacagtgt 288
|| || || ||||||||| ||| ||| || ||||||| |||||| || |||||
Sbjct: 304 gcagtcatcatcttctccaaccgtggaaagctgtacgagttcgccaataagagtgt 249
>gb|CF389852.1|CF389852 RTDR2_11_B08.b1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_11_B08_A021 3', mRNA
sequence
Length = 685
Score = 40.1 bits (20), Expect = 0.20
Identities = 137/176 (77%)
Strand = Plus / Minus
Query: 113 ggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaag 172
|||| ||||||||| ||| |||||||||| | || | ||||| || || |||| ||||
Sbjct: 487 ggaaagattgagataaagcggatcgagaatactacaaatcggcaagtgactttctccaag 428
Query: 173 cgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccgaggtg 232
|| || |||||| | || ||||||||||| || || || || || ||||| || ||||||
Sbjct: 427 cgtcgaaatgggttgctaaagaaggcgtatgaactgtctgttctttgcgatgcggaggtg 368
Query: 233 gcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaacagtgt 288
|| || || ||||||||| ||| ||| || ||||||| |||||| || |||||
Sbjct: 367 gcagtcatcatcttctccaaccgtggaaagctgtacgagttcgccaataagagtgt 312
>gb|CF389963.1|CF389963 RTDR2_11_B08.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_11_B08_A021 5', mRNA
sequence
Length = 791
Score = 40.1 bits (20), Expect = 0.20
Identities = 137/176 (77%)
Strand = Plus / Minus
Query: 113 ggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaag 172
|||| ||||||||| ||| |||||||||| | || | ||||| || || |||| ||||
Sbjct: 770 ggaaagattgagataaagcggatcgagaatactacaaatcggcaagtgactttctccaag 711
Query: 173 cgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccgaggtg 232
|| || |||||| | || ||||||||||| || || || || || ||||| || ||||||
Sbjct: 710 cgtcgaaatgggttgctaaagaaggcgtatgaactgtctgttctttgcgatgcggaggtg 651
Query: 233 gcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaacagtgt 288
|| || || ||||||||| ||| ||| || ||||||| |||||| || |||||
Sbjct: 650 gcagtcatcatcttctccaaccgtggaaagctgtacgagttcgccaataagagtgt 595
>gb|CO161503.1|CO161503 FLD1_29_F09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_29_F09_A029 3', mRNA sequence
Length = 896
Score = 40.1 bits (20), Expect = 0.20
Identities = 137/176 (77%)
Strand = Plus / Plus
Query: 113 ggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaag 172
|||| ||||||||| ||| |||||||||| | || | ||||| || || |||| ||||
Sbjct: 196 ggaaagattgagataaagcggatcgagaatactacaaatcggcaagtgactttctccaag 255
Query: 173 cgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccgaggtg 232
|| || |||||| | || ||||||||||| || || || || || ||||| || ||||||
Sbjct: 256 cgtcgaaatgggttgctaaagaaggcgtatgaactgtctgttctttgcgatgcggaggtg 315
Query: 233 gcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaacagtgt 288
|| || || ||||||||| ||| ||| || ||||||| |||||| || |||||
Sbjct: 316 gcagtcatcatcttctccaaccgtggaaagctgtacgagttcgccaataagagtgt 371
>gb|CO161575.1|CO161575 FLD1_29_F09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_29_F09_A029 5', mRNA sequence
Length = 909
Score = 40.1 bits (20), Expect = 0.20
Identities = 137/176 (77%)
Strand = Plus / Plus
Query: 113 ggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaag 172
|||| ||||||||| ||| |||||||||| | || | ||||| || || |||| ||||
Sbjct: 199 ggaaagattgagataaagcggatcgagaatactacaaatcggcaagtgactttctccaag 258
Query: 173 cgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccgaggtg 232
|| || |||||| | || ||||||||||| || || || || || ||||| || ||||||
Sbjct: 259 cgtcgaaatgggttgctaaagaaggcgtatgaactgtctgttctttgcgatgcggaggtg 318
Query: 233 gcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaacagtgt 288
|| || || ||||||||| ||| ||| || ||||||| |||||| || |||||
Sbjct: 319 gcagtcatcatcttctccaaccgtggaaagctgtacgagttcgccaataagagtgt 374
>gb|CX713803.1|CX713803 RTPQ1_13_F12.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_13_F12_A032 3', mRNA sequence
Length = 586
Score = 40.1 bits (20), Expect = 0.20
Identities = 137/176 (77%)
Strand = Plus / Minus
Query: 113 ggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaag 172
|||| ||||||||| ||| |||||||||| | || | ||||| || || |||| ||||
Sbjct: 473 ggaaagattgagataaagcggatcgagaatactacaaatcggcaagtgactttctccaag 414
Query: 173 cgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccgaggtg 232
|| || |||||| | || ||||||||||| || || || || || ||||| || ||||||
Sbjct: 413 cgtcgaaatgggttgctaaagaaggcgtatgaactgtctgttctttgcgatgcggaggtg 354
Query: 233 gcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaacagtgt 288
|| || || ||||||||| ||| ||| || ||||||| |||||| || |||||
Sbjct: 353 gcagtcatcatcttctccaaccgtggaaagctgtacgagttcgccaataagagtgt 298
>gb|DR013883.1|DR013883 HEAT1_22_D05.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_22_D05_A029 3', mRNA sequence
Length = 705
Score = 40.1 bits (20), Expect = 0.20
Identities = 137/176 (77%)
Strand = Plus / Minus
Query: 113 ggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcaccttctgcaag 172
|||| ||||||||| ||| |||||||||| | || | ||||| || || |||| ||||
Sbjct: 552 ggaaagattgagataaagcggatcgagaatactacaaatcggcaagtgactttctccaag 493
Query: 173 cgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacgccgaggtg 232
|| || |||||| | || ||||||||||| || || || || || ||||| || ||||||
Sbjct: 492 cgtcgaaatgggttgctaaagaaggcgtatgaactgtctgttctttgcgatgcggaggtg 433
Query: 233 gcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaacagtgt 288
|| || || ||||||||| ||| ||| || ||||||| |||||| || |||||
Sbjct: 432 gcagtcatcatcttctccaaccgtggaaagctgtacgagttcgccaataagagtgt 377
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 143,377
Number of Sequences: 355925
Number of extensions: 143377
Number of successful extensions: 43863
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 43800
Number of HSP's gapped (non-prelim): 61
length of query: 1168
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1149
effective length of database: 210,514,662
effective search space: 241881346638
effective search space used: 241881346638
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)