BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3390529.2.1
(407 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF666526.1|CF666526 RTCNT1_24_A11.b1_A029 Root control P... 50 7e-005
gb|AW010547.1|AW010547 ST07H08 Pine TriplEx shoot tip libra... 42 0.017
gb|AW042662.1|AW042662 ST23A11 Pine TriplEx shoot tip libra... 42 0.017
gb|AW869913.1|AW869913 NXNV_123_A03_F Nsf Xylem Normal wood... 42 0.017
gb|BE997080.1|BE997080 NXCI_098_F10_F NXCI (Nsf Xylem Compr... 42 0.017
gb|BQ702265.1|BQ702265 NXSI_126_G05_F NXSI (Nsf Xylem Side ... 42 0.017
gb|CF392152.1|CF392152 RTDR3_8_D01.b1_A022 Loblolly pine ro... 42 0.017
gb|CF392917.1|CF392917 RTDR3_19_E01.g1_A022 Loblolly pine r... 42 0.017
gb|CF392996.1|CF392996 RTDR3_18_A11.g1_A022 Loblolly pine r... 42 0.017
gb|CF470316.1|CF470316 RTDS1_18_E11.g1_A015 Drought-stresse... 42 0.017
gb|CF470783.1|CF470783 RTDS1_14_C11.g1_A015 Drought-stresse... 42 0.017
gb|CF471273.1|CF471273 RTDS1_2_C05.g1_A015 Drought-stressed... 42 0.017
gb|CF472269.1|CF472269 RTDS1_5_F06.g1_A015 Drought-stressed... 42 0.017
gb|CF473299.1|CF473299 RTWW2_1_D05.g1_A021 Well-watered lob... 42 0.017
gb|CF474112.1|CF474112 RTWW2_18_B10.g1_A021 Well-watered lo... 42 0.017
gb|CF474398.1|CF474398 RTWW2_20_B10.g1_A021 Well-watered lo... 42 0.017
gb|CF475070.1|CF475070 RTWW2_5_E07.g1_A021 Well-watered lob... 42 0.017
gb|CF475234.1|CF475234 RTWW2_14_G01.g1_A021 Well-watered lo... 42 0.017
gb|CF475684.1|CF475684 RTWW2_11_C09.g1_A021 Well-watered lo... 42 0.017
gb|CF477739.1|CF477739 RTWW3_9_F08.g1_A022 Well-watered lob... 42 0.017
gb|CF478742.1|CF478742 RTWW3_16_H06.g1_A022 Well-watered lo... 42 0.017
gb|CF664036.1|CF664036 RTCNT1_6_H08.g1_A029 Root control Pi... 42 0.017
gb|CF666590.1|CF666590 RTCNT1_24_A11.g1_A029 Root control P... 42 0.017
gb|CF667636.1|CF667636 RTCNT1_31_C12.g1_A029 Root control P... 42 0.017
gb|CF668766.1|CF668766 RTCNT1_38_C01.g1_A029 Root control P... 42 0.017
gb|CF669217.1|CF669217 RTCNT1_41_B05.g1_A029 Root control P... 42 0.017
gb|CF671883.1|CF671883 RTCNT1_59_H10.g1_A029 Root control P... 42 0.017
gb|CF672034.1|CF672034 RTCNT1_60_H09.g1_A029 Root control P... 42 0.017
gb|CO161753.1|CO161753 FLD1_31_A03.b1_A029 Root flooded Pin... 42 0.017
gb|CO161826.1|CO161826 FLD1_31_A03.g1_A029 Root flooded Pin... 42 0.017
gb|CO169868.1|CO169868 NDL1_10_E01.b1_A029 Needles control ... 42 0.017
gb|CO170314.1|CO170314 NDL1_13_E08.b1_A029 Needles control ... 42 0.017
gb|CO196804.1|CO196804 GEO1_1_D12.g1_A029 Root gravitropism... 42 0.017
gb|CO364199.1|CO364199 RTK1_14_G04.b1_A029 Roots minus pota... 42 0.017
gb|CV034061.1|CV034061 RTNACL1_38_H09.b1_A029 Roots plus ad... 42 0.017
gb|CV034133.1|CV034133 RTNACL1_38_H09.g1_A029 Roots plus ad... 42 0.017
gb|CX649300.1|CX649300 COLD1_34_G03.b1_A029 Root cold Pinus... 42 0.017
gb|CX650301.1|CX650301 COLD1_44_F07.g1_A029 Root cold Pinus... 42 0.017
gb|CX653246.1|CX653246 COLD1_64_G10.b1_A029 Root cold Pinus... 42 0.017
gb|CX713191.1|CX713191 RTPQ1_7_C05.g1_A032 Roots treated wi... 42 0.017
gb|DR017964.1|DR017964 STRS1_19_D05.g1_A034 Shoot tip pitch... 42 0.017
gb|DR020145.1|DR020145 STRS1_35_A06.b1_A034 Shoot tip pitch... 42 0.017
gb|DR020221.1|DR020221 STRS1_35_A06.g1_A034 Shoot tip pitch... 42 0.017
gb|DR021910.1|DR021910 STRS1_47_D10.g1_A034 Shoot tip pitch... 42 0.017
gb|DR022019.1|DR022019 STRS1_48_G11.b1_A034 Shoot tip pitch... 42 0.017
gb|DR022100.1|DR022100 STRS1_48_G11.g1_A034 Shoot tip pitch... 42 0.017
gb|DR024571.1|DR024571 STRS1_65_H03.g1_A034 Shoot tip pitch... 42 0.017
gb|DR053189.1|DR053189 RTCA1_9_C04.g1_A029 Roots minus calc... 42 0.017
gb|DR055785.1|DR055785 RTCA1_25_H06.g1_A029 Roots minus cal... 42 0.017
gb|DR058535.1|DR058535 RTNIT1_12_H12.b1_A029 Roots minus ni... 42 0.017
gb|DR058623.1|DR058623 RTNIT1_12_H12.g1_A029 Roots minus ni... 42 0.017
gb|DR078891.1|DR078891 RTFEPL1_7_B10.g1_A029 Roots plus add... 42 0.017
gb|DR080873.1|DR080873 RTFEPL1_25_G07.g1_A029 Roots plus ad... 42 0.017
gb|DR089333.1|DR089333 RTAL1_8_B08.b1_A029 Roots plus added... 42 0.017
gb|DR089412.1|DR089412 RTAL1_8_B08.g1_A029 Roots plus added... 42 0.017
gb|DR098035.1|DR098035 STRR1_38_E10.g1_A033 Stem Response R... 42 0.017
gb|DR099987.1|DR099987 STRR1_60_E01.g1_A033 Stem Response R... 42 0.017
gb|DR100460.1|DR100460 STRR1_64_F12.b1_A033 Stem Response R... 42 0.017
gb|DR100523.1|DR100523 STRR1_64_F12.g1_A033 Stem Response R... 42 0.017
gb|DR112170.1|DR112170 RTS1_26_H03.b1_A029 Roots minus sulf... 42 0.017
gb|DR112247.1|DR112247 RTS1_26_H03.g1_A029 Roots minus sulf... 42 0.017
gb|DR112734.1|DR112734 RTS1_30_E10.b1_A029 Roots minus sulf... 42 0.017
gb|DR112803.1|DR112803 RTS1_30_E10.g1_A029 Roots minus sulf... 42 0.017
gb|DR120305.1|DR120305 RTMG1_28_G07.g2_A029 Roots minus mag... 42 0.017
gb|DR163340.1|DR163340 RTFE1_42_H01.b1_A029 Roots minus iro... 42 0.017
gb|DR163427.1|DR163427 RTFE1_42_H01.g1_A029 Roots minus iro... 42 0.017
gb|DR177848.1|DR177848 RTMNUT1_7_F06.g1_A029 Roots minus mi... 42 0.017
gb|DR387879.1|DR387879 RTHG1_24_F05.g2_A029 Roots plus adde... 42 0.017
gb|DR686075.1|DR686075 EST1076152 Normalized pine embryo li... 42 0.017
gb|DR744473.1|DR744473 RTCU1_22_E09.g1_A029 Roots plus adde... 42 0.017
gb|DR745178.1|DR745178 RTCU1_27_C08.g1_A029 Roots plus adde... 42 0.017
gb|DT633198.1|DT633198 EST1148129 Normalized pine embryo li... 42 0.017
>gb|CF666526.1|CF666526 RTCNT1_24_A11.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_24_A11_A029 3', mRNA sequence
Length = 768
Score = 50.1 bits (25), Expect = 7e-005
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| ||||||||||||||||||||
Sbjct: 39 aagttcactgccatcggcgtgtacctgga 67
>gb|AW010547.1|AW010547 ST07H08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST07H08, mRNA sequence
Length = 890
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 157 aagttcactgcaatcggcgtgtacctgga 185
>gb|AW042662.1|AW042662 ST23A11 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST23A11, mRNA sequence
Length = 478
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 238 aagttcactgcaatcggcgtgtacctgga 266
>gb|AW869913.1|AW869913 NXNV_123_A03_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_123_A03 5' similar to Arabidopsis thaliana
sequence At5g05270 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 551
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 197 aagttcactgcaatcggcgtgtacctgga 225
>gb|BE997080.1|BE997080 NXCI_098_F10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_098_F10 5' similar to Arabidopsis
thaliana sequence At5g05270 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 453
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 91 aagttcactgcaatcggcgtgtacctgga 119
>gb|BQ702265.1|BQ702265 NXSI_126_G05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_126_G05 5' similar to Arabidopsis thaliana
sequence At5g05270 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 543
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 206 aagttcactgcaatcggcgtgtacctgga 234
>gb|CF392152.1|CF392152 RTDR3_8_D01.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_8_D01_A022 3', mRNA
sequence
Length = 694
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 490 aagttcactgcaatcggcgtgtacctgga 462
>gb|CF392917.1|CF392917 RTDR3_19_E01.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_19_E01_A022 5', mRNA
sequence
Length = 722
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 203 aagttcactgcaatcggcgtgtacctgga 231
>gb|CF392996.1|CF392996 RTDR3_18_A11.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_18_A11_A022 5', mRNA
sequence
Length = 715
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 194 aagttcactgcaatcggcgtgtacctgga 222
>gb|CF470316.1|CF470316 RTDS1_18_E11.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_18_E11_A015 5', mRNA sequence
Length = 702
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 194 aagttcactgcaatcggcgtgtacctgga 222
>gb|CF470783.1|CF470783 RTDS1_14_C11.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_14_C11_A015 5', mRNA sequence
Length = 706
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 189 aagttcactgcaatcggcgtgtacctgga 217
>gb|CF471273.1|CF471273 RTDS1_2_C05.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_2_C05_A015 5', mRNA sequence
Length = 721
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 199 aagttcactgcaatcggcgtgtacctgga 227
>gb|CF472269.1|CF472269 RTDS1_5_F06.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_5_F06_A015 5', mRNA sequence
Length = 754
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 15 aagttcactgcaatcggcgtgtacctgga 43
>gb|CF473299.1|CF473299 RTWW2_1_D05.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_1_D05_A021 5', mRNA sequence
Length = 778
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 184 aagttcactgcaatcggcgtgtacctgga 212
>gb|CF474112.1|CF474112 RTWW2_18_B10.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_18_B10_A021 5', mRNA sequence
Length = 748
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 176 aagttcactgcaatcggcgtgtacctgga 204
>gb|CF474398.1|CF474398 RTWW2_20_B10.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_20_B10_A021 5', mRNA sequence
Length = 697
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 176 aagttcactgcaatcggcgtgtacctgga 204
>gb|CF475070.1|CF475070 RTWW2_5_E07.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_5_E07_A021 5', mRNA sequence
Length = 698
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 175 aagttcactgcaatcggcgtgtacctgga 203
>gb|CF475234.1|CF475234 RTWW2_14_G01.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_14_G01_A021 5', mRNA sequence
Length = 375
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 149 aagttcactgcaatcggcgtgtacctgga 177
>gb|CF475684.1|CF475684 RTWW2_11_C09.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_11_C09_A021 5', mRNA sequence
Length = 736
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 259 aagttcactgcaatcggcgtgtacctgga 287
>gb|CF477739.1|CF477739 RTWW3_9_F08.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_9_F08_A022 5', mRNA sequence
Length = 718
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 123 aagttcactgcaatcggcgtgtacctgga 151
>gb|CF478742.1|CF478742 RTWW3_16_H06.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_16_H06_A022 5', mRNA sequence
Length = 684
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 162 aagttcactgcaatcggcgtgtacctgga 190
>gb|CF664036.1|CF664036 RTCNT1_6_H08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_6_H08_A029 5', mRNA sequence
Length = 583
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 186 aagttcactgcaatcggcgtgtacctgga 214
>gb|CF666590.1|CF666590 RTCNT1_24_A11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_24_A11_A029 5', mRNA sequence
Length = 767
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 165 aagttcactgcaatcggcgtgtacctgga 193
>gb|CF667636.1|CF667636 RTCNT1_31_C12.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_31_C12_A029 5', mRNA sequence
Length = 865
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 271 aagttcactgcaatcggcgtgtacctgga 299
>gb|CF668766.1|CF668766 RTCNT1_38_C01.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_38_C01_A029 5', mRNA sequence
Length = 486
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 126 aagttcactgcaatcggcgtgtacctgga 154
>gb|CF669217.1|CF669217 RTCNT1_41_B05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_41_B05_A029 5', mRNA sequence
Length = 705
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 183 aagttcactgcaatcggcgtgtacctgga 211
>gb|CF671883.1|CF671883 RTCNT1_59_H10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_59_H10_A029 5', mRNA sequence
Length = 802
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 175 aagttcactgcaatcggcgtgtacctgga 203
>gb|CF672034.1|CF672034 RTCNT1_60_H09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_60_H09_A029 5', mRNA sequence
Length = 754
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 147 aagttcactgcaatcggcgtgtacctgga 175
>gb|CO161753.1|CO161753 FLD1_31_A03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_31_A03_A029 3', mRNA sequence
Length = 889
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 176 aagttcactgcaatcggcgtgtacctgga 204
>gb|CO161826.1|CO161826 FLD1_31_A03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_31_A03_A029 5', mRNA sequence
Length = 892
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 236 aagttcactgcaatcggcgtgtacctgga 264
>gb|CO169868.1|CO169868 NDL1_10_E01.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_10_E01_A029 3', mRNA sequence
Length = 694
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 476 aagttcactgcaatcggcgtgtacctgga 448
>gb|CO170314.1|CO170314 NDL1_13_E08.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_13_E08_A029 3', mRNA sequence
Length = 782
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 654 aagttcactgcaatcggcgtgtacctgga 626
>gb|CO196804.1|CO196804 GEO1_1_D12.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_1_D12_A029 5', mRNA sequence
Length = 821
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 816 aagttcactgcaatcggcgtgtacctgga 788
>gb|CO364199.1|CO364199 RTK1_14_G04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_14_G04_A029 3', mRNA sequence
Length = 859
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 144 aagttcactgcaatcggcgtgtacctgga 172
>gb|CV034061.1|CV034061 RTNACL1_38_H09.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_38_H09_A029 3', mRNA sequence
Length = 790
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 584 aagttcactgcaatcggcgtgtacctgga 556
>gb|CV034133.1|CV034133 RTNACL1_38_H09.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_38_H09_A029 5', mRNA sequence
Length = 740
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 710 aagttcactgcaatcggcgtgtacctgga 682
>gb|CX649300.1|CX649300 COLD1_34_G03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_34_G03_A029 3', mRNA sequence
Length = 742
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 13 aagttcactgcaatcggcgtgtacctgga 41
>gb|CX650301.1|CX650301 COLD1_44_F07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_44_F07_A029 5', mRNA sequence
Length = 771
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 179 aagttcactgcaatcggcgtgtacctgga 207
>gb|CX653246.1|CX653246 COLD1_64_G10.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_64_G10_A029 3', mRNA sequence
Length = 796
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 37 aagttcactgcaatcggcgtgtacctgga 65
>gb|CX713191.1|CX713191 RTPQ1_7_C05.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_7_C05_A032 5', mRNA sequence
Length = 648
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 133 aagttcactgcaatcggcgtgtacctgga 161
>gb|DR017964.1|DR017964 STRS1_19_D05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_19_D05_A034 5', mRNA sequence
Length = 768
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 153 aagttcactgcaatcggcgtgtacctgga 181
>gb|DR020145.1|DR020145 STRS1_35_A06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_35_A06_A034 3', mRNA sequence
Length = 762
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 37 aagttcactgcaatcggcgtgtacctgga 65
>gb|DR020221.1|DR020221 STRS1_35_A06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_35_A06_A034 5', mRNA sequence
Length = 767
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 179 aagttcactgcaatcggcgtgtacctgga 207
>gb|DR021910.1|DR021910 STRS1_47_D10.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_47_D10_A034 5', mRNA sequence
Length = 568
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 185 aagttcactgcaatcggcgtgtacctgga 213
>gb|DR022019.1|DR022019 STRS1_48_G11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_48_G11_A034 3', mRNA sequence
Length = 773
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 45 aagttcactgcaatcggcgtgtacctgga 73
>gb|DR022100.1|DR022100 STRS1_48_G11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_48_G11_A034 5', mRNA sequence
Length = 682
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 190 aagttcactgcaatcggcgtgtacctgga 218
>gb|DR024571.1|DR024571 STRS1_65_H03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_65_H03_A034 5', mRNA sequence
Length = 739
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 704 aagttcactgcaatcggcgtgtacctgga 676
>gb|DR053189.1|DR053189 RTCA1_9_C04.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_9_C04_A029 5', mRNA sequence
Length = 553
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 147 aagttcactgcaatcggcgtgtacctgga 175
>gb|DR055785.1|DR055785 RTCA1_25_H06.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_25_H06_A029 5', mRNA sequence
Length = 547
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 182 aagttcactgcaatcggcgtgtacctgga 210
>gb|DR058535.1|DR058535 RTNIT1_12_H12.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_12_H12_A029 3', mRNA sequence
Length = 754
Score = 42.1 bits (21), Expect = 0.017
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 aagttcacggccatcggcgtgtacctgga 212
|||||||| || |||||||||||||||||
Sbjct: 36 aagttcactgcaatcggcgtgtacctgga 64
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,796
Number of Sequences: 355925
Number of extensions: 37796
Number of successful extensions: 10544
Number of sequences better than 0.5: 72
Number of HSP's better than 0.5 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10472
Number of HSP's gapped (non-prelim): 72
length of query: 407
length of database: 217,277,237
effective HSP length: 18
effective length of query: 389
effective length of database: 210,870,587
effective search space: 82028658343
effective search space used: 82028658343
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)